LOC110487763 (LOC106605281)


Basic Information

Item Value
gene id LOC110487763
gene name LOC106605281
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33610856 ~ 33644021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559674.2
ACTTCAAGGAGCAAACATGGAACATACAATGCTTAGATAGGCTATAGATATAATGGAAagcgcacacacgcgcgcactcACTCATccgccccctttctctctctctctctctctctctctctctctctctctctctctctctctctctcgtgttttCCCCCCACACCTCAATAACGGTGCGTGAGATATATTTGTgcatatattttttattcacGGGGATACATTTTCAATGGCTTTTGGCGGTCGTGGATTATAATTTATATTTCTGAACAGCAGTGGAATATTGGCTAACATCGACTCCAATTGTGAATAGCGTATTCCTTATTTTCTGACTGGTGTGTGGTATTTTTGTTGCATGCCGAGAGACTGTCAAGACTCGAAGACCACGTTCAATGCCGTTGGAACATGTCCTATGTCCCCTTTCAAGatGCGAGGTGTGCCGTCCCCCCCTCCTATCGCCCCCATGCCCCTTCCTTTGCCACTCCCTCCTACGACCACCCCGACTGGAATCCCCGTCTCTGTGTGATCTCCGGAAATCAGCTCTACATGTTGGACCAGGAGGAGGTACACCCTTTGTTGATGCGCGAGCGGCGCTCCGAGTTGCACAGGAACAAGCTGCTGCGAAGGACAGTCAGCGTTCCTGTTGAGGGGAGGCACCATCCAGAGATGGGTAAGTTGGCCATGGGCCCTTCTATCTCCCTGAATTATTTTGGACCATAGAAATACAGTCAATAGCTTGGAACCTCTGACCATAAAGCACAAATGTTATGTtgtacttcctgcttttacttcctgctttactCTTATGGGGACCCTcgcaatggctgccagtccactGATTATGGcgtcattgacttgaatgggaggCCCGTTCTACTCACTCTAGTTCTGTGTTTCTGACTCTACCTGTCATGGGCTGCTCTCACCTTT

Function

NR:

description
ras/Rap GTPase-activating protein SynGAP-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559674.2 True 930 mRNA 0.49 3 33610856 33644021

Neighbor

gene id symbol gene type direction distance location
syngap1b LOC106605281 coding downstream 19866 33523035 ~ 33590990 (-)
smg5 LOC106605282 coding downstream 107046 33489408 ~ 33503810 (-)
LOC110487724 LOC106605285 coding downstream 134035 33466723 ~ 33476821 (-)
LOC110487699 NA coding downstream 196905 33408916 ~ 33413968 (-)
rbm8a rbm8a coding downstream 206342 33400775 ~ 33404514 (-)
LOC110487773 LOC106605251 coding upstream 4102 33648123 ~ 33662621 (-)
LOC110487810 LOC106605280 coding upstream 50996 33695017 ~ 33704797 (-)
LOC110487821 LOC106605277 coding upstream 68244 33712265 ~ 33715647 (-)
LOC110487833 LOC106581966 coding upstream 81749 33725770 ~ 33732444 (-)
LOC110487899 LOC106605274 coding upstream 135172 33779193 ~ 33850765 (-)
G134490 NA non-coding downstream 105763 33504843 ~ 33505093 (-)
G134484 NA non-coding downstream 121932 33488627 ~ 33488924 (-)
G134483 NA non-coding downstream 122849 33487794 ~ 33488007 (-)
G134456 NA non-coding downstream 176266 33433704 ~ 33434590 (-)
G134562 NA non-coding upstream 81500 33725521 ~ 33758779 (-)
G134557 tap1 non-coding upstream 98931 33742952 ~ 33746685 (-)
G134619 NA non-coding upstream 144805 33788826 ~ 33789204 (-)
G134635 NA non-coding upstream 165553 33809574 ~ 33809795 (-)
G134669 NA non-coding upstream 222287 33866308 ~ 33866913 (-)
LOC110487618 LOC100380645 other downstream 385754 33208500 ~ 33225125 (-)
G134102 NA other downstream 822735 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 859278 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1962061 31631886 ~ 31648795 (-)
G132197 NA other downstream 2067847 31536047 ~ 31543009 (-)
G134668 NA other upstream 221467 33865488 ~ 33865937 (-)
G135575 NA other upstream 960194 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1662346 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2030277 35674291 ~ 35700846 (-)
G137479 NA other upstream 2725983 36370004 ~ 36370328 (-)

Expression


Co-expression Network