LOC110487773 (LOC106605251)


Basic Information

Item Value
gene id LOC110487773
gene name LOC106605251
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33648123 ~ 33662621 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559699.2
tgAATAACACGTGTGAGCGCAGCTTCCACTTGCCCTTCTAAAACTTTCTCCAGGACTCCAAACTTGCAGCACCCTTCTTTGGGAGGTACCAATTAATGAGGATGGGGGGAGTAAGTGAAGGGGATGATGTGTTAGCTCGATGGAGTGATGGACTACTGTACCTCGGCAATGTGAaaagagTAGATGGAGTCAAGCAATGTTGTCTGGTGAGATTTGAGGACAACTCTGAATTTTGGGTCCTAAGAAAAGACATCCACTCTTTCTCAGTTGGAGTGGAAGAAGTTTGCTGTATCTGTGATGCCCCACCTCTTAAAGAACCTctcatcaattgtcttaaatgtCGTCACGGTTATCATCCGGAGTGCCACACTCCGTCCATTGAGCCGGAAGCTGACAGCAATTCTTGGATATGTCGGCAATGTGTCTTTGCAGTGGCAACCAAGAGAGGGGGAGCCATCAAACGAGGACGGTTTGCCCGGCTCATGCAAATCATGAAACTTCGGCTGCCCTATCAGCTGTCATCTTTAGACTGGGACCCACAGCATCTCACCAACCAGCAGcagtgttactgctactgtgccGGACCTGGAGAGTGGAACCTGAAAATGTTGCAGTGTGGAAGTTGTGGTCAGTGGTTTCATGAAGCTTGCACACAGTGTCTGACCAAGCCGTTGTTATATGGAGACAGGTTTTATGAGTTCCAGTGCTCAGTCTGTGCAAACGGACCAGAGACAATTCAACGGCTACCCATGAGCTGGGTAGATTTGGCCCATTTGGTGCTCTACCACCTCTCCTTGTGCTGCAAGAGAAAATACTTTGATTTCGACCATGAAATCATGTCGTTTGCCAATGAGAATTGGGACTCTTTGCTTCTAGGCTCGctctctgaCACACCAAGGCAAGATCGCTGTCACAATCTGCTCAACGCTTTGAACTCCAACAAAGACAGGTTTGTCTCTGGTAAAGAGATCAAGAAGAAGAAGTGTCTTTTTGGGCTCCAGGTCCGAGCTCCACCTCCCCTGACCTCTGATTCGTCCCCCCTCATCACTGACCCGCCCATCAACATCACCCAAAGGAGAAGCCCATTGTCACTGCCCTGCCAGAGGAGAGCGATGGGGCCAGAGTCACGCAAATCAAAGAGGCGCATCATGGAGACACAGCCTTGTCCGCCCCCGGTCCCAGCCACCCCAATAGATCTGGTGCCATGTTGCCATGGCTACGTAGGTGGAACTAACCTCTACAACtccaggaaggaggaggagctgaATTTGGGCTCTCCACCTAAGAGGATGTTTGCCCTGTATCACCCCACCTATAACGGAGCCCCAGCCATCTCTAGAACCCTGCATCACTATAGtGCGGAAGACCCTTGTCGAGTGCCGCCCCCCTgcctccccttctccctgtcatcctcccaccatcaccaccacaacaaccagcagcaccACCAGCACCAGCCTGGCCAGAAGTCGGATCCCTGCCCTTCCCTCATGCTGCGTGACGTCCCTTCCTATCCGGGCGGCGTGGGGGGCGGGGGGGATGGGTCAGCTGCCAGGGGCTGGGGGGGCGGGGACGGGGTGAGGATTTTGGCGAGGCGAGTAACGCCAGACGGCAAGGtccagtacctcgtggagtgggggAACGTGAGTGTGTactga

Function

NR:

description
PHD finger protein 1-like isoform X3

GO: NA

KEGG:

id description
K11467 PHF1, PCL1; PHD finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559699.2 True 1658 mRNA 0.53 15 33648123 33662621

Neighbor

gene id symbol gene type direction distance location
LOC110487763 LOC106605281 coding downstream 4102 33610856 ~ 33644021 (-)
syngap1b LOC106605281 coding downstream 57133 33523035 ~ 33590990 (-)
smg5 LOC106605282 coding downstream 144313 33489408 ~ 33503810 (-)
LOC110487724 LOC106605285 coding downstream 171302 33466723 ~ 33476821 (-)
LOC110487699 NA coding downstream 234172 33408916 ~ 33413968 (-)
LOC110487810 LOC106605280 coding upstream 32396 33695017 ~ 33704797 (-)
LOC110487821 LOC106605277 coding upstream 49644 33712265 ~ 33715647 (-)
LOC110487833 LOC106581966 coding upstream 63149 33725770 ~ 33732444 (-)
LOC110487899 LOC106605274 coding upstream 116572 33779193 ~ 33850765 (-)
LOC110487942 LOC106582030 coding upstream 411934 34074555 ~ 34134234 (-)
G134490 NA non-coding downstream 143030 33504843 ~ 33505093 (-)
G134484 NA non-coding downstream 159199 33488627 ~ 33488924 (-)
G134483 NA non-coding downstream 160116 33487794 ~ 33488007 (-)
G134456 NA non-coding downstream 213533 33433704 ~ 33434590 (-)
G134562 NA non-coding upstream 62900 33725521 ~ 33758779 (-)
G134557 tap1 non-coding upstream 80331 33742952 ~ 33746685 (-)
G134619 NA non-coding upstream 126205 33788826 ~ 33789204 (-)
G134635 NA non-coding upstream 146953 33809574 ~ 33809795 (-)
G134669 NA non-coding upstream 203687 33866308 ~ 33866913 (-)
LOC110487618 LOC100380645 other downstream 423021 33208500 ~ 33225125 (-)
G134102 NA other downstream 860002 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 896545 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1999328 31631886 ~ 31648795 (-)
G132197 NA other downstream 2105114 31536047 ~ 31543009 (-)
G134668 NA other upstream 202867 33865488 ~ 33865937 (-)
G135575 NA other upstream 941594 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1643746 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2011677 35674291 ~ 35700846 (-)
G137479 NA other upstream 2707383 36370004 ~ 36370328 (-)

Expression


Co-expression Network