LOC110487810 (LOC106605280)


Basic Information

Item Value
gene id LOC110487810
gene name LOC106605280
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33695017 ~ 33704797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946455.1
actggcttcgaggtccagaATGTTGTCACTTGTCCTGCTGATCCTGTTTCAACCAGGAGAGGGAGGCACCTCACCTATCTCCTGTTACAATGATCAAGGGGAAGCTGTTGACTGGTTCTATCTCTACAAACTCCCCCATGTTGATCGTGAATTTCCCAACGATGGACAGAGTTATCTACTGATGGACAAAGGGAGCGAGGGATGGACGGATGGAGAAGTGTTGGTGAATGACAGCACTGGAGCCCTGGGGAGGACAGTGGGCCAGCTGTATGAGCAGGGGAAGAATGAAGACATTGCATACATCCTGTATAATGACCAGAGACCACccgaggagggaggaagaggatttGGTTTCCTTAGTAGCCGAGGTGGCCACACAAAAGgtGTTGTCTTATTGGACAAGACACAGGGCTACTGGTTGGTCCATAGCACCCCTCATTTCCCCCCTGTAAAGGAAATGGGGCAATATTCCTACCCAGGTAGTGGTGTAAAGAACGGACAGAACTTCATCTGTGTGACCTACCCACTGGAACGCTTTCAGGCCATTGGAGAGCAGTTGCAGATCAACCAGCCCAATGTGTATGACTGTGGTGTCCCTGCTTCCTTGGCCTCTCTGGTGCCCGCACTGGCTGACGTCTGTAACAACAGCCAAGGGCAGATGGCCTATAGCAACTTACCGCACACCCAACCCGCATCCAATCGCAGCGTGTCTCTCACCTCATTGGGTGGAACCGAGTTCATCAGCTTTGCCAAGGGGAGATCATTCAATAATGAACTGTACCACTCCTGGGtggctccctccctccagtcaGACCTCCTAGTCCAGTTCTGGATCCGCTCCACTGGCATCCTGCCCTCTGACTGCTCCCTGGGCTGGAAGGTCCTGGACATCCAGCTTATCTCCCCAGGCGGGAGGATCACCTTCAAGGCCTCCAACGACCACTCCAAGTGGGCCGTGAGTACCACCGGGGGTGGGGTGGATGGAGCTgctggctgggtgtgtgtggGCGACATCAACCGGAACGAggctgaggagaagagagggggcgGGACGGTGTGTCTGCAGGACGCCACGGTGTGGAAGGCCTATCGGACAGCGGCGCTGGAGTGTGAGATGTGCGGGGGAGGGACTAGCGGGTGTGATGTGGACGTAGAGGATGCAAGGCACTACCAGGGAGATATGAAGCAGTAAGCATCAGTGTAAAGTTACTAGTATGCACACAGTAGGTACCCCATAGAATGTTGATTAATAACATCTAATTCActctttttatggcagttttggagttTTTCATAAATTGCCATGAATAGAAACATATTTGAAAGGGAAGTGGCACTCCTGTAATAATTCAACAATGAGCACTTTGCTACATTCTGTGTAGTTCTATAAGTTTCTAATGACTGTAGGAAATGTTGATTGTGATCTCAGGTACATTTTATATGCTTCTGTtttcaacctttttttttttatgtagaatttgtattttatttttatgatcGTTAAAGTATGTctaatgttttttctttatttctctttTACTTTTTAGTCAAATGTTTGGTGACGTTTTCAGCTTTTAGCTTGAAACAGGCAAAGATACTGTCTTCTGTCGCAATAAAGAAAGGACTGTTGCGAGGTGCACAAATA
>XM_021559730.2
ggcgttagTGCGAGATCCTCCACTAGGCGTTGAAGGCGCCCTGGAACAGAGCTAGCAGAAGGGTAGCTAAAGCAAACTATTGTCATTAACTCGTGACCGTAAGCCCGCCCCGTGACATCGTAGTTCAAAACAAGGATGCATCTCGACTTTAGAAATGGAATAGTTCGCCACAATCAAAGATCACGTGGATACGGAAAAGCTGTAGAATCAGCATAATTGTCAAGTTCTTATCTACTCAAAGATGTTGTCACTTGTCCTGCTGATCCTGTTTCAACCAGGAGAGGGAGGCACCTCACCTATCTCCTGTTACAATGATCAAGGGGAAGCTGTTGACTGGTTCTATCTCTACAAACTCCCCCATGTTGATCGTGAATTTCCCAACGATGGACAGAGTTATCTACTGATGGACAAAGGGAGCGAGGGATGGACGGATGGAGAAGTGTTGGTGAATGACAGCACTGGAGCCCTGGGGAGGACAGTGGGCCAGCTGTATGAGCAGGGGAAGAATGAAGACATTGCATACATCCTGTATAATGACCAGAGACCACccgaggagggaggaagaggatttGGTTTCCTTAGTAGCCGAGGTGGCCACACAAAAGgtGTTGTCTTATTGGACAAGACACAGGGCTACTGGTTGGTCCATAGCACCCCTCATTTCCCCCCTGTAAAGGAAATGGGGCAATATTCCTACCCAGGTAGTGGTGTAAAGAACGGACAGAACTTCATCTGTGTGACCTACCCACTGGAACGCTTTCAGGCCATTGGAGAGCAGTTGCAGATCAACCAGCCCAATGTGTATGACTGTGGTGTCCCTGCTTCCTTGGCCTCTCTGGTGCCCGCACTGGCTGACGTCTGTAACAACAGCCAAGGGCAGATGGCCTATAGCAACTTACCGCACACCCAACCCGCATCCAATCGCAGCGTGTCTCTCACCTCATTGGGTGGAACCGAGTTCATCAGCTTTGCCAAGGGGAGATCATTCAATAATGAACTGTACCACTCCTGGGtggctccctccctccagtcaGACCTCCTAGTCCAGTTCTGGATCCGCTCCACTGGCATCCTGCCCTCTGACTGCTCCCTGGGCTGGAAGGTCCTGGACATCCAGCTTATCTCCCCAGGCGGGAGGATCACCTTCAAGGCCTCCAACGACCACTCCAAGTGGGCCGTGAGTACCACCGGGGGTGGGGTGGATGGAGCTgctggctgggtgtgtgtggGCGACATCAACCGGAACGAggctgaggagaagagagggggcgGGACGGTGTGTCTGCAGGACGCCACGGTGTGGAAGGCCTATCGGACAGCGGCGCTGGAGTGTGAGATGTGCGGGGGAGGGACTAGCGGGTGTGATGTGGACGTAGAGGATGCAAGGCACTACCAGGGAGATATGAAGCAGTAAGCATCAGTGTAAAGTTACTAGTATGCACACAGTAGGTACCCCATAGAATGTTGATTAATAACATCTAATTCActctttttatggcagttttggagttTTTCATAAATTGCCATGAATAGAAACATATTTGAAAGGGAAGTGGCACTCCTGTAATAATTCAACAATGAGCACTTTGCTACATTCTGTGTAGTTCTATAAGTTTCTAATGACTGTAGGAAATGTTGATTGTGATCTCAGGTACATTTTATATGCTTCTGTtttcaacctttttttttttatgtagaatttgtattttatttttatgatcGTTAAAGTATGTctaatgttttttctttatttctctttTACTTTTTAGTCAAATGTTTGGTGACGTTTTCAGCTTTTAGCTTGAAACAGGCAAAGATACTGTCTTCTGTCGCAATAAAGAAAGGACTGTTGCGAGGTGCACAAATA

Function

NR:

description
deoxyribonuclease-2-alpha-like

GO: NA

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946455.1 False 1645 mRNA 0.49 7 33695017 33704356
XM_021559730.2 True 1867 mRNA 0.48 7 33695017 33704797

Neighbor

gene id symbol gene type direction distance location
LOC110487773 LOC106605251 coding downstream 32396 33648123 ~ 33662621 (-)
LOC110487763 LOC106605281 coding downstream 50996 33610856 ~ 33644021 (-)
syngap1b LOC106605281 coding downstream 104027 33523035 ~ 33590990 (-)
smg5 LOC106605282 coding downstream 191207 33489408 ~ 33503810 (-)
LOC110487724 LOC106605285 coding downstream 218196 33466723 ~ 33476821 (-)
LOC110487821 LOC106605277 coding upstream 7468 33712265 ~ 33715647 (-)
LOC110487833 LOC106581966 coding upstream 20973 33725770 ~ 33732444 (-)
LOC110487899 LOC106605274 coding upstream 74396 33779193 ~ 33850765 (-)
LOC110487942 LOC106582030 coding upstream 369758 34074555 ~ 34134234 (-)
LOC110534769 efhb coding upstream 465948 34170745 ~ 34171718 (-)
G134490 NA non-coding downstream 189924 33504843 ~ 33505093 (-)
G134484 NA non-coding downstream 206093 33488627 ~ 33488924 (-)
G134483 NA non-coding downstream 207010 33487794 ~ 33488007 (-)
G134456 NA non-coding downstream 260427 33433704 ~ 33434590 (-)
G134562 NA non-coding upstream 20724 33725521 ~ 33758779 (-)
G134557 tap1 non-coding upstream 38155 33742952 ~ 33746685 (-)
G134619 NA non-coding upstream 84029 33788826 ~ 33789204 (-)
G134635 NA non-coding upstream 104777 33809574 ~ 33809795 (-)
G134669 NA non-coding upstream 161511 33866308 ~ 33866913 (-)
LOC110487618 LOC100380645 other downstream 469915 33208500 ~ 33225125 (-)
G134102 NA other downstream 906896 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 943439 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 2046222 31631886 ~ 31648795 (-)
G132197 NA other downstream 2152008 31536047 ~ 31543009 (-)
G134668 NA other upstream 160691 33865488 ~ 33865937 (-)
G135575 NA other upstream 899418 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1601570 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 1969501 35674291 ~ 35700846 (-)
G137479 NA other upstream 2665207 36370004 ~ 36370328 (-)

Expression


Co-expression Network