LOC110487821 (LOC106605277)


Basic Information

Item Value
gene id LOC110487821
gene name LOC106605277
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33712265 ~ 33715647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559741.2
ggggtgggttggggtaagaggaacaggaagagactAGAGggctgacaggcaggcagagagagagtgagaaagagctCGTCACGGTGATATGTGAAGCATAACTGATAGCAATTAGTTCTCACGAAGAAAACTGTCGTGAATCAGTGATGCCATCCCTAATCAGTGTGGACACAAGAAGATGATGTTTATCAGAAACTGAACTCCAGCCAAACACAGGTTTACACTGAGACAGACGTGAATGGAGGTTGTCATGGAATACCCAGGGGTCAAAGTTGAAACAGTTGAAGAGGAGCATTTGGAGGATCTAATCATTATTAAGGAGGGGGATGTTGAGAGAGTTGTTGAGGGAGGGACAGAGCCAATAACAGGCAAGAGCAACGATGAAGACTCCAGTGAGGAAGAGGATGCCACTGCCAGACATGGACAGATTGGAAAAGCCAACACTGAAAGTGGAGATGGAGACAAAAGAAAAAAGGATAACCAAATAAATCAAGCAAAAggagagactgggacagaggaggGGGTTGAGCACATTAAAGGGATGGATGAATTGGTAATGGATAGACAGAAAATGGAATGCAAGAAAGAGGGGATGGTGATGGTGGATATAacagaaaaatacaaaacaacagaacatGATTTGAAGACGGACAAACCATCACAAGGATTACAAGTTGGCACAAATATACATCTTCCCTCTGACCAGTTGCCCAAAGATACGCTGAGCCCAGAGCATGcccaaaaacagGCTCAACGGTTAACCCCTTACTTCCCAGACGCTCTGTATGACCTGGTCTTTACTCTGCAAGAAGGAAGACGACTCAATGACCAGCGGTGCTCGttcagagggaggagaaggtgccATTCTGAACCCAACACCTACATTCCGGCCCACAGAGCCCACAGAGTGCATTTCTCCTCAATGACCTCGCTGCAGAAAGATGAGTTCTTTGACTTGCTGGCTACCTCCCAAGGCCGTCGGCTTGATGACCAGCGGGCGGAACTACATGACACCCCACCCCCTAAGCCGAAAGCCAATAAGAAGAGGAGCAGCGTAAAAGATACAAAGCCCAAAAAGTCTGCTCCAATTGCAGTGCAGAACGAGGACTTGTACAATATGATTCTCATGTCGCAGGCCCAGGGTAGGCTGGAGGAGCAGCGCAGTGCGGCCCCGGGCCCTATGGATGATGAAGACTTCTTTTCCTTACTGCTGAGTGTCCAGGGAGGACGCATGGAGGACCAGAGGACTGAGCTGCCTGGGATTCTGGGAACCTGAGAGATACACATGCTGGAGAGATGGGCTCAAATGGCTCAGAGCATGTGGTGTAGCCCTATAGTGCAATGGCTTTTGCTTCTTATTCACCTGGCCAGACCAGGCATGACCATTTTGTATGGTCTGAGCTGACAGTACCATCTGTATCGATGACTGCATCAGTAATTTAATATAAAATATTGTATGTGAATAACAGAGGTGTCAATTCAGTTGCATAATGCTATAGAGACTAATTCTAATGTTTGTTGTATGATATTAAGCTTACAGAGTGGGCAGATTTGTATGTTGACTGCACAATAATTTGGATGATATTCAAAACCCCAAAAGCTTTTGGGTGCTTTAAATGTGTTTATTGCAATTTGAGGAAATTAGTTTTGCCCAACACAGCAGTGAATGAGTATGAATGAGAGTGTTTGTGTTTCCATGTTATATTTCAATACAGCTCCTCACGAGAATAAACTATGTGTTAAAGACTTGCA

Function

NR:

description
uncharacterized protein LOC110487821

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559741.2 True 1752 mRNA 0.46 5 33712265 33715647

Neighbor

gene id symbol gene type direction distance location
LOC110487810 LOC106605280 coding downstream 7468 33695017 ~ 33704797 (-)
LOC110487773 LOC106605251 coding downstream 49644 33648123 ~ 33662621 (-)
LOC110487763 LOC106605281 coding downstream 68244 33610856 ~ 33644021 (-)
syngap1b LOC106605281 coding downstream 121275 33523035 ~ 33590990 (-)
smg5 LOC106605282 coding downstream 208455 33489408 ~ 33503810 (-)
LOC110487833 LOC106581966 coding upstream 10123 33725770 ~ 33732444 (-)
LOC110487899 LOC106605274 coding upstream 63546 33779193 ~ 33850765 (-)
LOC110487942 LOC106582030 coding upstream 358908 34074555 ~ 34134234 (-)
LOC110534769 efhb coding upstream 455098 34170745 ~ 34171718 (-)
LOC110534780 pp2d1 coding upstream 470407 34186054 ~ 34188011 (-)
G134490 NA non-coding downstream 207172 33504843 ~ 33505093 (-)
G134484 NA non-coding downstream 223341 33488627 ~ 33488924 (-)
G134483 NA non-coding downstream 224258 33487794 ~ 33488007 (-)
G134456 NA non-coding downstream 277675 33433704 ~ 33434590 (-)
G134562 NA non-coding upstream 9874 33725521 ~ 33758779 (-)
G134557 tap1 non-coding upstream 27305 33742952 ~ 33746685 (-)
G134619 NA non-coding upstream 73179 33788826 ~ 33789204 (-)
G134635 NA non-coding upstream 93927 33809574 ~ 33809795 (-)
G134669 NA non-coding upstream 150661 33866308 ~ 33866913 (-)
LOC110487618 LOC100380645 other downstream 487163 33208500 ~ 33225125 (-)
G134102 NA other downstream 924144 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 960687 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 2063470 31631886 ~ 31648795 (-)
G132197 NA other downstream 2169256 31536047 ~ 31543009 (-)
G134668 NA other upstream 149841 33865488 ~ 33865937 (-)
G135575 NA other upstream 888568 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1590720 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 1958651 35674291 ~ 35700846 (-)
G137479 NA other upstream 2654357 36370004 ~ 36370328 (-)

Expression


Co-expression Network