LOC110487856 (LOC106581981)


Basic Information

Item Value
gene id LOC110487856
gene name LOC106581981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33719833 ~ 33726238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559774.2
tacacacgcAGTTGCATCAAAGTTATATCCATTTACCTGATTGTTCAGAATAATTACTTTGTTTAAAGTCATAGCTATGAATATCCctagtacagtagcctatgggcTCTGTCTGGAGTACAATTCGAATTTTTATTAACATTCTTGTTCGAGACTTTCTTTGTCAATCGCTAGGGGACTCTAGTGCAGGCCTGCTATAGTGTTTGAGTTTTGAAGGGTGTGTGACTGTGATTACTCGTCCGCGCCACTGTGTGCCGCTCAGGATGTTGCAGCAGCAGCCTCTCACTGGCAACGGGCCCTCTAACGGCCGGGGCCTTGGCCTGAGCTCTCACCCCGGTATGCACCCTCTAAACTCGGTTCATCCATCTTCCCACCACCGCTCCGACGGAGACACGGGCCACGAAGGCGCAGAAAATGGACATGAAAGCCGCAGAGACATTGGCGACATATTGCAGCAAATCATGACCATCACCGACCAAAGTTTGGACGAAGCACAAGCAAAAAAACACGCATTGAATTGCCATCGAATGAAACCAGCTTTGTTCAGCGTCTTATGTGAGATCAAAGAGAAAACAGGCCTATCAATGCGAAATGCTCAGGAGGAAGAATCACAGGACCCACAGCTGGTGCGATTGGATAACATGCTGCTGGCGGAGGGTGTGGCTGGGCCGGAGAAAGGTGGCGGGGCGGCAGCGGCGGTGTCCGCAGCCACCAGCTCTGGAGGCATGTCTCCAGACAGCTCACTGGAACACTCAGACTACAAAAGCAAGTTGAGCCAGATTCGCAACATCTATCACACTGAGATGGAGAAATATGACCAGGCCTGTAGTGAGTTCACTACCCACGTGATGAACCTGCTGAGGGAGCAGTCACGTACGCGGCCGGTGTCACCGAGGGAGATTGAGCGCATGGTGGCCATCATCCACCGCAAGTTCAGCTCCATCCAGACACAACTCAAGCAGAGCACCTGCGAGGCCGTCATGATCCTGAGGTCCCGCTTCCTCGACGCCAGGCGTAAGAGACGAAACTTCAGCAAGCAGGCGACGGAAGTCCTGAATGAGTATTTCTACTCCCATCTCGCCAACCCTTACCCCAGTGAAGAGGCCAAAGAAGAACTAGCCAAACAGTGTAGCATCACTGTCTCTCAGGTGTGCAACTGGTTTGGAAACAAGAGAATCCGCTACAAGAAGAACATTGGGAAGTTCCAAGAGGAGGCCAACATCTATGCCATGAAGACGGCCATCGTGGCGACACAGAGCGAGGACTCTCCACACACGCCCAACTCAACAGGATCGGGGGGCTTCTCACTCACTGGACCAGACCTTTTCCTGGGTGTTCCACCAATGAATGGAGAGCAGCCTGTCTACATGGGAGCACAAACTAATGGGAACTGGCAAGGGCAAAACACACCCCCCTCTGCCACTTCCCCAGGAAACGACCACTCAGAGGAGTCTGACTGATGGCCCCGTCCACTTTGTGTCGATGACATAGATGGAAAGAAAACGGAAAAAGACTGAAAGAATGATATCACTCTTACTTGGCTGCAGTTTTTGTATGTCTTTTCTGTTTCTTACTGTCCAATTATATTATGTCCATgttcattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgttttgtaTTGGGATCATGGGTTTTGTTTTCCACTACTTTATATGTTACTGTGGTATGTGGGCAGGGAGGCTTGGGAAATTGCATTACCATTGTTTTATTAGGCTATATTATTAATGCTGTTACAAATATTTTAGGATTTTAGTTTAAAGGTCAGATATAGTTGCATTTAGAGGATGTGGGGGCAATAGAGAAAATCCAAAgattttgtgtgtttgttttctctTTTCTACTGGgcttgtttgtctgtgtgtgtctatatcatGAATGAAGTATGTGTGCTGGTTATGTTAACAGTTTGAATGAGTATATCAACAGTGCTGTCATTCTGTACAGTGAGTGAAAAACACCTGtattctctctacctcttttacAATAAAGACTCTGTATTCACA

Function

NR:

description
PREDICTED: pre-B-cell leukemia transcription factor 1-like

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030901 midbrain development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559774.2 True 2103 mRNA 0.48 8 33719833 33726238

Neighbor

gene id symbol gene type direction distance location
LOC110487797 LOC106605278 coding upstream 24892 33668143 ~ 33694941 (+)
LOC118939517 NA coding upstream 179138 33531590 ~ 33540695 (+)
ntrk1 LOC106605284 coding upstream 258836 33434698 ~ 33460997 (+)
LOC110487688 LOC106605287 coding upstream 311314 33406809 ~ 33408519 (+)
LOC110487649 LOC106581815 coding upstream 397999 33316290 ~ 33321834 (+)
tap1 tap1 coding downstream 7206 33733444 ~ 33746441 (+)
LOC110487876 NA coding downstream 23409 33749647 ~ 33758792 (+)
LOC110487915 LOC106582023 coding downstream 147667 33873905 ~ 33880108 (+)
LOC110487926 LOC106605271 coding downstream 161601 33887839 ~ 33945400 (+)
LOC118939520 NA coding downstream 438448 34164350 ~ 34169250 (+)
G133761 LOC106605277 non-coding upstream 4755 33634159 ~ 33715078 (+)
G133781 NA non-coding upstream 39348 33677384 ~ 33680485 (+)
G133725 NA non-coding upstream 125843 33593623 ~ 33593990 (+)
G133699 NA non-coding upstream 159532 33559931 ~ 33560301 (+)
G133678 NA non-coding upstream 205971 33513333 ~ 33513862 (+)
G133785 NA non-coding downstream 14356 33740594 ~ 33742572 (+)
G133759 LOC106605274 non-coding downstream 52998 33779236 ~ 33783239 (+)
G133844 NA non-coding downstream 72622 33798860 ~ 33799090 (+)
G133847 NA non-coding downstream 75716 33801954 ~ 33802157 (+)
G133852 NA non-coding downstream 81096 33807334 ~ 33807657 (+)
G133663 LOC106605282 other upstream 222548 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 550455 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1832261 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2353511 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2426799 31262054 ~ 31294577 (+)
G133760 LOC106605274 other downstream 87795 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 236179 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 961717 34687955 ~ 34692286 (+)
G135916 NA other downstream 1245402 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1246211 34972449 ~ 34972801 (+)

Expression


Co-expression Network