tap1 (tap1)


Basic Information

Item Value
gene id tap1
gene name tap1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33733444 ~ 33746441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559784.2
ACACAGTAATCACCTACTCGTTTCACATAAAGTATAGCATAGTATAATTAATATAAAATCGGCATTTGCCAATGTCAAGAAGGGGCGGGTCGGTCAAAAGGGACTTTCCAGTTGTGTACTTTCGGTTTTATTATGAAGCACAATCATCAACTCGAACGTGGGGTCCTCAAGTCTAGTCGCAGGCTGTTGCTGTATAACTAAATTAATACGAAGATTGCCCTTTATATGATATGCGTGTGTAACATAGAACATAGGCTAGATCTATTCTTAATAGATATAGGCTATCGTTTCCTTGACATTCAGAAGAAATTGCAACCTCATTCGTAAGAGCCCACATGCAAACAGCCTGTTCAGGATGCCGAAAATGAACTTCTCTCCGCTGCTCTTCCTgtgcatggatgtgtgtgtggtgcagaCAGTCCGCTTGGCCcaactctcccctcttctcctccaccatcCCCTCATCACCTTGTGGGGTGGAAGCCTGCTCCGTGCCGGCCTCCACCTCTTTCTCACCTTCAAATTCCCTGGAAGTACCCCATGGATGAGCAGCTTTGAGGGGCTCCAGAGCATGGGGGTCCTCTGCTTCCATTGCCCACTCTACATCAGCCTTCTCTGGGCATGTGGCCAGTCCATCCTGGGGCAACTATGGGGATGGCACTCCTGGCAGGGGCTACTTCAGGGCTACTGCGTAACAGTCGTAGCATGTTTGTACTGGACACGCTACGTCCCTTCTCTTCTTACCAAGCCCACCAAGGAACCACAGAAGAAGACTGGGGCCTCTCTAGAGAAACTGATGGGATACATGAAGCCTTATTTCATACGCTTTGGAGCCGTGCTGAGTCTTGTCGTCATCTCCTCCCTTGGTGAGATGGCTATTCCCCACTACACCGGCCGAATGACAGACTGGATTATGAATGAAGACGAGCCTGAAGCCTTTACTCACGCCATCACGGTCATGTCTCTGATTACAGTCATGAGtgctgtgtgtgagtttgtgtgtgaccTCATCTACAACATCACCATGAGTCGCATACACACCTCCATCCAGGGCCTAGTCTTCCAGTCGGTGCTGAAGCAGGAGATTGCTTTCTTTGACACAGCACAGACAGGTGACCTTGTGTCACGCATCACCACAGACACCAACGACATGAGTGAGTCTCTGAGTGAGAAGTTGAGTCTGCTGATGTGGTACTTCATGCGGGTCACTTTCCTCTTCATCTTCATGCTCAATCTCTCCTGGAAGCTGTCCCTCTTCACCGCTATGGGGCTTCCTATCATCTGGGTCATACCAAAGATATCCGGCAAGTGGTACCAGGAGCTCGGTGCGAAGGTTCAAAAGTCACTAGCCCAGGCCAATGACGTTGCCACGGAGACCTTCTCCTCTATGAAGACAGTACGCAGCTTTGCCAACGAGGAGGGCGAGACAGAGCGCTACAGGAAGAGGCTGGAGAAGACCTACTCTCTGAATAAAGAGGAAGCAGCAGCCTACGCAGCTTCAACCTGGACCAATAGTaTGTCAAGCCTGTTCCTGAAGGTCAGTATCCTGTACTATGGCGGTAGTCTGGTGACAGGGGGGACCGTCAGCAGTGGGGACCTGGTGGCCTTTGTGCTCTACGAGCTCCAATTCTCCTCTGCTGTGGAGGCCGTGATGTCGTATTACCCAAGTGTGATGAGGGCAATCGGTGGCTCTGAGAAGATATTCGAGTATGTGGACCGACAGCCCCAAGTTCCTCCAGAAGGCACCCTTGCCCCACAGAATCTTGAGGGACATGTTGAGTTCAAGAATGTCACATTTACCTACCCTACCAGGGAAGATACACCGGTGCTCaagGGCCTGTCTCTGGAGCTGAGGCCTGGGCAGATCACTGCCTTGGTGGGGGCTTCTGGAGCAGGGAAAAGCACCTGTGTGAGCCTGCTGGAGAGGTTCTACCTGCCCCAGGAAGGAGAGATCCTATTGGATGGACAGCCACTGCACAGCTACAAGAACCAGTACCTACACGACAAGATCAGTGTGGTGAGTCAGGAGCCGGTGTTGTTTGCTCGTTCTGTCAAGGAGAACATCAAATATGGCAGAGATGATGCCACTGATGAGGAGATGTACCGGGCTGCTGAGCTGGCAAACGCCCACAAGTTCATCTCTGACCTGCCCAATGGCTATGATACAGATGCCGGGGAGAAGGGAGGCCAGGTTTCAGGAGGGCAGAAGCAACGCATAGCCATCGCCAGAGCTTTGATCAGAAAGCCTCGGATTCTAGTGCTGGACGATGCCACCAGTAACTTGGACACAGAGAGCGAGCATTTGGTCCACCAAGCTCTGCTCAAGGACTCAAACCCCTGCTCAGTGCTGCTGATTGCTCATAAGCTGAGCACTGTGGAGAAGGCCAATCACATTGTCGTTCTTGAGGAGGGAAAGGTGCTAGAGGAGGGGAGCCATGTTGAGCTGCTGGAGAAAGGTGGAACCTATGCTGACCTGGTGAACAAGCAGAACACTGGCTTCCAGCGCAAAGAAGGGGAGGAGCTGAAAAACTAAAACAGAGGCTCCAATCCCATGACACTTCTCAATTTACACTGAAATCCCACTCTGCCACCATCTCACATTTTCAACATTATTACCTACTATTTCTACTGTATCACATATGCTTTGCAAATACTCTGAGATCATAGCATCAAACTTTAGTTTAATTATCTCCCCTAAGTGATTTTGAGGTACTCAAAGAAAAAACGAATTACAAGAACAGTCCTGTAATATAAAAGGTTTCATGCAAAGAGCACATTTCTATGTTCAACTTTCTATTTGCACTATACTGCAACTTAAGTATTCTTAATGCCCCAAatgcattttgtatttatttttacatttatttttgttgaATTGTTCTCCCACATTTGTGTTATAACTATGTAAATAGGGATCCCaaataatgttttgttttctgtgtacattgTCTCTAAGGCAGTACAATACATTGGcagttttctgttctgtgttaATGACAATAAACATTCTGCTCTCTGAAA

Function

symbol description
tap1 Predicted to enable ABC-type peptide transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in several diseases, including MHC class I deficiency; autoimmune disease (multiple); bronchial disease (multiple); diffuse scleroderma; and lung disease (multiple). Orthologous to human TAP1 (transporter 1, ATP binding cassette subfamily B member).

NR:

description
antigen peptide transporter 1-like

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05653 ABCB2, TAP1; ATP-binding cassette, subfamily B (MDR/TAP), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559784.2 True 3021 mRNA 0.49 12 33733444 33746441

Neighbor

gene id symbol gene type direction distance location
LOC110487856 LOC106581981 coding upstream 7206 33719833 ~ 33726238 (+)
LOC110487797 LOC106605278 coding upstream 38503 33668143 ~ 33694941 (+)
LOC118939517 NA coding upstream 192749 33531590 ~ 33540695 (+)
ntrk1 LOC106605284 coding upstream 272447 33434698 ~ 33460997 (+)
LOC110487688 LOC106605287 coding upstream 324925 33406809 ~ 33408519 (+)
LOC110487876 NA coding downstream 3206 33749647 ~ 33758792 (+)
LOC110487915 LOC106582023 coding downstream 127464 33873905 ~ 33880108 (+)
LOC110487926 LOC106605271 coding downstream 141398 33887839 ~ 33945400 (+)
LOC118939520 NA coding downstream 418245 34164350 ~ 34169250 (+)
LOC110488005 rab5a coding downstream 430602 34177043 ~ 34185964 (+)
G133761 LOC106605277 non-coding upstream 18366 33634159 ~ 33715078 (+)
G133781 NA non-coding upstream 52959 33677384 ~ 33680485 (+)
G133725 NA non-coding upstream 139454 33593623 ~ 33593990 (+)
G133699 NA non-coding upstream 173143 33559931 ~ 33560301 (+)
G133678 NA non-coding upstream 219582 33513333 ~ 33513862 (+)
G133759 LOC106605274 non-coding downstream 32795 33779236 ~ 33783239 (+)
G133844 NA non-coding downstream 52419 33798860 ~ 33799090 (+)
G133847 NA non-coding downstream 55513 33801954 ~ 33802157 (+)
G133852 NA non-coding downstream 60893 33807334 ~ 33807657 (+)
G133854 NA non-coding downstream 63163 33809604 ~ 33809899 (+)
G133663 LOC106605282 other upstream 236159 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 564066 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1845872 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2367122 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2440410 31262054 ~ 31294577 (+)
G133760 LOC106605274 other downstream 67592 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 215976 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 941514 34687955 ~ 34692286 (+)
G135916 NA other downstream 1225199 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1226008 34972449 ~ 34972801 (+)

Expression


Co-expression Network