LOC110487915 (LOC106582023)


Basic Information

Item Value
gene id LOC110487915
gene name LOC106582023
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33873905 ~ 33880108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559836.2
ATAAAAGGAAAAAGAACAGCACCGAGCGCCACTCAACCTCTTGAAGACCCATGAGCAGATAGGTGCAGTGTCTCTCTCCCGGATTTCAGACACAATGTTTGCGTTATTGGTTTGCATCCTGACACTGCATGACGTGTACTCTGCGTGCAATGTGTCACaaatgTGCCCAGACAGCACAGTAGTTCAGACTGAGATCCTTAACCAGCACAACGCCTTCCGGAGAGCGGTTACGCCAACTGCTAGAGACATGCTCAAGATGAACTGGAGCGAGGAGGCAGCGGCCAGTGCTCAGGCTTGGGTTGACACCTGCTCCATGACTCATGGCCCACCCAGCAGTCGCATGCTTGGCGACTATGAAATGGGTGAGAACCTGTTCATGTCCTCCGCTTCGAGGAATTGGACTCAAATCGTTACAGCCTGGCACAGTGAGGTCAGAGATTACTCCTATCCCAATGGATCTATCAATGGTAAACCCATCGGCCACTACACACAGGTGGTTTGGAACAGTTCGTACAAGGTTGGCTGTGGTGTGGCCTTGTGTCCTGGCTCAGTCTACTTCTATGGATGCCAATACTACAGAGCGGGAAACTacaaaggagtggctccataCAAGGAAGGAGCCACATGTGCTGACTGCCCCAACTCCTGCGAAAATAAGCTTTGCACCAATCCCTGTCCTTACGTAAACAAGTATGCCAACTGTGCCGCCATGAAAAAGCAGGCCGGGTGCAGCAATTCTTTGGTGTACGCCTGGTGTCCCGCCCTCTGCCTGTGCACCTCCAAAATAACCTAAAACCACCAGGCCTCTTCAAAATGGTCCACTGAAAGATAACTTTGAATGATTCCTCTGTTGTTTCCTTGTctatgagaagaaaaaaaaaaaacatatacacCTGGTTGATCGATCTACTGTACTTCTGGTGAAGTCAGTTCATTTGAAAAATACTAACTGTCACTAATAATTTCTTAATTATCACTGTAGGTCTAAGGTACAGTTAAAACCTTAAAACATTATTCTTATTCTGGGGGTAACATAAGGTGTCTAACCTATAGTAACTAATGATAGTTGGAAGCAGAGCAATTTATTTTGTTccctttcattgatttcaatgtCTTCATACCAATTTGACCTCCCAAAAAATCCGTATTTGATTTGCATGCAAGTTGAATAAGAATATCTTCTACATTTTGAGAAGGCAATATTTCCATCAGTTACTGTAACAGTGAACATTTTGATACTTAAATTTCTGCAAaaaaactacacagtaatgtggTTATACAGAACAGTAATACCTCAACACATTTAACTTTAAGTTGAATCAGGACATTATTTGATGTTTGATGAAATGCAAGGAATGCTGCTCGTAATTTTCTCTATCAAAATTTTCACGTGACAGCATTATATAACCCTTATTATTTTCCTCAATCACATTAAACGATCATGAAGAT

Function

NR:

description
cysteine-rich venom protein TEL1-like

GO: NA

KEGG:

id description
K19919 CRISP1_2_3; cysteine-rich secretory protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559836.2 True 1449 mRNA 0.43 9 33873905 33880108

Neighbor

gene id symbol gene type direction distance location
LOC110487876 NA coding upstream 115113 33749647 ~ 33758792 (+)
tap1 tap1 coding upstream 127464 33733444 ~ 33746441 (+)
LOC110487856 LOC106581981 coding upstream 147667 33719833 ~ 33726238 (+)
LOC110487797 LOC106605278 coding upstream 178964 33668143 ~ 33694941 (+)
LOC118939517 NA coding upstream 333210 33531590 ~ 33540695 (+)
LOC110487926 LOC106605271 coding downstream 7731 33887839 ~ 33945400 (+)
LOC118939520 NA coding downstream 284578 34164350 ~ 34169250 (+)
LOC110488005 rab5a coding downstream 296935 34177043 ~ 34185964 (+)
ube2e2 LOC106582102 coding downstream 406342 34279641 ~ 34317474 (+)
LOC110488035 LOC106582094 coding downstream 437500 34317608 ~ 34324592 (+)
G133896 NA non-coding upstream 1963 33868445 ~ 33871942 (+)
G133895 NA non-coding upstream 5912 33867491 ~ 33867993 (+)
G133886 NA non-coding upstream 23096 33849990 ~ 33850809 (+)
G133884 NA non-coding upstream 25353 33848338 ~ 33848552 (+)
G133878 NA non-coding upstream 32798 33840883 ~ 33841107 (+)
G134764 NA non-coding downstream 104114 33984222 ~ 33984490 (+)
G134832 NA non-coding downstream 148343 34028451 ~ 34028684 (+)
G134835 NA non-coding downstream 150085 34030193 ~ 34030403 (+)
G134871 NA non-coding downstream 170819 34050927 ~ 34051219 (+)
G134898 NA non-coding downstream 192936 34073044 ~ 34073262 (+)
G133760 LOC106605274 other upstream 59422 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 376620 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 704527 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1986333 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2507583 31360408 ~ 31366322 (+)
G134735 LOC100136012 other downstream 82309 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 807847 34687955 ~ 34692286 (+)
G135916 NA other downstream 1091532 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1092341 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 1104864 34984948 ~ 35000555 (+)

Expression


Co-expression Network