LOC118939520


Basic Information

Item Value
gene id LOC118939520
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34164350 ~ 34169250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946589.1
ggcacggcaactgcaccgctcagcccaacgcatcaccgggagcacactgcctgcccttcaggacatctacagcactcgGTGTCAAAGGAAGGTCATGAAGATCAtaaaggacctcagccacctgagccacggcTTGTTCACcacactatcatccagaaggcaagGTAGGAAGTTTTGCTTCATTGTGATGAGGTTCTGGCATATGTCCACTGCTGATGTTCCTGAGGACCAGGAGGGTACCAAGATCTTCAAAATGGCCACCACTGAAGAAGACGGCCCACAGAAGAAGATAGTGACAGCTGTCTATGAatTCCACTGGGAGCTGACCAAGGGAGCTGAACCTGATTGGACAGTCACTAACATCTGGCACTAGAAACTGATAGGGTGATTAGACAAGACCCATGAACACCTCTGTCACCAGGATACAGCATCAAACCAAGCATACACAGTATCGTTGACCTAATTCAGCTCGGACAACATTAAACTCAACAAAACGTTATTAACCAACAGGACTTCAATCAGCAGGACCATTGTACTCAGCCAAGCGCACAcaaactcaactgaaatattacaaGTCAACAGAAGAGTCATCTTGAATCCTAGCTGCTTTGTAGGGTGGACTGGATGGAACCAGAGCCCTACAACCTGAAATACAGACCTATTATTTATTCCTAAGTTCTCCGATCTCAGGTTTGTTGGGAACAATAGACTTTCTATGAACCTCAGCATGAACAATTAGTTCAAACAATATCCCTGCTGTTATAGTTTGTCCCAGAACAAAATAAACTGCTTCACGGTGA
>TU155415
GAAGAgatgagggccctggcggagtcgtgccaggaaaataacctctccctcaacatcaacaaaacgaagaagttgattgtggacttcaggagacagcagagggagcacgtcGCCATCCACATCGACGAagggagaaggtgaaaagcttaaagttccccggcgtacacagCACCGACAATttaaaatggtccacccacacagacagtgtggtgaagaaggtgcaacagcgccttttcaacctcaggaggctgtagAAATTTGGcctggcccctaagaccctcacaaacttttacagatgcaccattgagagcatcctgtcaggctatGTCACAGCCAggcacggcaactgcaccgctcagcccaacgcatcaccgggagcacactgcctgcccttcaggacatctacagcactcgGTGTCAAAGGAAGGTCATGAAGATCAtaaaggacctcagccacctgagccacggcTTGTTCACcacactatcatccagaaggcaaggtcagtacagctgcatcaaagctgggaccgggagactgaaaaacagcttctctctcaaggccatcagactgttaaatagccatcactagccggcttccacccagtaccctgtcctgaacttagtcactATCCCTAGCCTGCTATTACCTGGTTACTCATTTGCtgaaccttagaggctgctgccctatgtacatagacatggaacactggtcactaataatgtttgcatactgtttaacccatttcatatgtatatactgtattctagtcaagtccatcttattcaactattgctgtatTTACACTATTCTATCCACGTATTCCTCCGATATTCTATAAATTTTACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946589.1 False 800 mRNA 0.46 3 34164686 34169250
TU155415 True 847 lncRNA 0.42 1 34164350 34165196

Neighbor

gene id symbol gene type direction distance location
LOC110487926 LOC106605271 coding upstream 219286 33887839 ~ 33945400 (+)
LOC110487915 LOC106582023 coding upstream 284578 33873905 ~ 33880108 (+)
LOC110487876 NA coding upstream 405894 33749647 ~ 33758792 (+)
tap1 tap1 coding upstream 418245 33733444 ~ 33746441 (+)
LOC110487856 LOC106581981 coding upstream 438448 33719833 ~ 33726238 (+)
LOC110488005 rab5a coding downstream 7793 34177043 ~ 34185964 (+)
ube2e2 LOC106582102 coding downstream 117200 34279641 ~ 34317474 (+)
LOC110488035 LOC106582094 coding downstream 148358 34317608 ~ 34324592 (+)
nr1d2a LOC106582110 coding downstream 158700 34327950 ~ 34335871 (+)
LOC110488056 LOC106605265 coding downstream 180968 34350218 ~ 34366288 (+)
G134964 NA non-coding upstream 7839 34156616 ~ 34156847 (+)
G134925 NA non-coding upstream 51063 34108647 ~ 34113623 (+)
G134898 NA non-coding upstream 91424 34073044 ~ 34073262 (+)
G134871 NA non-coding upstream 113467 34050927 ~ 34051219 (+)
G134835 NA non-coding upstream 134283 34030193 ~ 34030403 (+)
G134970 NA non-coding downstream 849 34170099 ~ 34170427 (+)
G135023 NA non-coding downstream 107042 34276292 ~ 34328636 (+)
G135261 NA non-coding downstream 197482 34366732 ~ 34367044 (+)
G135295 LOC106582155 non-coding downstream 238902 34408152 ~ 34408477 (+)
G134735 LOC100136012 other upstream 202028 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 350203 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 667401 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 995308 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2277114 31834170 ~ 31887572 (+)
si:dkey-30e9.6 LOC106605205 other downstream 518705 34687955 ~ 34692286 (+)
G135916 NA other downstream 802390 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 803199 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 815722 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 982510 35151760 ~ 35153650 (+)

Expression


Co-expression Network