LOC110534769 (efhb)


Basic Information

Item Value
gene id LOC110534769
gene name efhb
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34170745 ~ 34171718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110534769
CCCCTGCTTCTCTACATTGTGTGAATCTCACTGTATAATTATGACATCTTTCCACATAGACTATCGTATGTACGGGACTCCCACAGTGCGCACCAACCTGGTGGCCCCGCGGATCAAGAGCGTCAGCGACAGCACTAACTACGGTGACCAGACCACAGCATTTGACCTCCTGTTTCCTACGCTGTACTCCCTAAGGGGAGTCCACATGGAGCACTTCTTCTGTCCCCGCACCTAAGACGAGATCACTGACATATTCCGAAATGTGGGCGCAAGTATTTCCGAGGAGACATTTGCGGAGGCGAGGAAGCTGGCATCCATGAGACACCCCACTGGGGACATGTGTGTGGAGATTTTCCGGGACGTTCTAAAGGAAATTCAAGCTAATTAAATCTGAATAGTATATTTTACCACCTCAGTATCTATTCCATGAAAGAATGTACTTCAAATATTCCATATACAACACAAGTGTTatacttcttttttttctttgagACTAACTATTAATTGTCATATTAACGGTCATTAAAATGATTTTTGATTGTGGACTGTAATGTATTTTCTTAGGTTGAGAGCAATAAGCTGTTGCTAGAATAAGTAATAAAAACAATTCTGCTGCTAACTAAATGCCCTTCCTGCATGTGATGATATACAATATCTACTCCTGAAACCTAAATAAATATTGAGAATTATG
>TU155619
ACCCACTGACGAAtcaagggagagaaagaaagatatggTTTAGtagattttatagaatagcactgggacatacAGTACCATGTGGGATTTTGTGACAGCATTCAAAATGTAGGAAAAACGTTGTTTCAAAAATATAATTGGTATGAACAATTCTGCCATTGGAGAAGTGATTGACACAAAATGTTATTGAAATAGGACGGAGCATGAGCAAATCACTTGTCAAAGAGATCTTCTGATTCTTATTTCCGCCTCCATTTCCTTTTCAGATCACTGACATAT

Function

symbol description
efhb Predicted to enable calcium ion binding activity. Orthologous to human EFHB (EF-hand domain family member B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110534769 False 691 mRNA 0.36 2 34170745 34171718
TU155619 True 279 lncRNA 0.33 1 34171182 34171460

Neighbor

gene id symbol gene type direction distance location
LOC110487942 LOC106582030 coding downstream 36511 34074555 ~ 34134234 (-)
LOC110487899 LOC106605274 coding downstream 319980 33779193 ~ 33850765 (-)
LOC110487833 LOC106581966 coding downstream 438301 33725770 ~ 33732444 (-)
LOC110487821 LOC106605277 coding downstream 455098 33712265 ~ 33715647 (-)
LOC110487810 LOC106605280 coding downstream 465948 33695017 ~ 33704797 (-)
LOC110534780 pp2d1 coding upstream 14336 34186054 ~ 34188011 (-)
LOC110488012 LOC106605268 coding upstream 21941 34193659 ~ 34234849 (-)
nek10 nek10 coding upstream 199098 34370816 ~ 34384026 (-)
LOC110488086 LOC105021885 coding upstream 234349 34406067 ~ 34422793 (-)
LOC110488127 ica69 coding upstream 293348 34465066 ~ 34475371 (-)
G135143 NA non-coding downstream 5072 34165356 ~ 34165673 (-)
G134863 NA non-coding downstream 124246 34046259 ~ 34046499 (-)
G134859 NA non-coding downstream 126539 34043750 ~ 34044206 (-)
G134811 NA non-coding downstream 152908 34017530 ~ 34017837 (-)
G134770 NA non-coding downstream 181299 33989240 ~ 33989446 (-)
G135170 NA non-coding upstream 45099 34216817 ~ 34217054 (-)
G135210 NA non-coding upstream 145013 34316731 ~ 34317466 (-)
G135255 NA non-coding upstream 189548 34361266 ~ 34361592 (-)
G135262 NA non-coding upstream 195166 34366884 ~ 34367175 (-)
G135265 NA non-coding upstream 195779 34367497 ~ 34368075 (-)
G134668 NA other downstream 304808 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 945643 33208500 ~ 33225125 (-)
G134102 NA other downstream 1382624 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 1419167 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 2521950 31631886 ~ 31648795 (-)
G135575 NA other upstream 432497 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1134649 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 1502580 35674291 ~ 35700846 (-)
G137479 NA other upstream 2198286 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 2462475 36634193 ~ 36639005 (-)

Expression


Co-expression Network