LOC110534780 (pp2d1)


Basic Information

Item Value
gene id LOC110534780
gene name pp2d1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34186054 ~ 34188011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619730.2
ATGGACTCATGTATTCCCATAGAGGGGCTCCCTGGGGAATCCTTTGACTCCAGTCCTGACACAGGAAGTCCTTACCCTTCCCAACACCATGCCCTCCACCACAGTGGGAGCAATATCCATGGCAACCCATCTTCCAATTTGGAGAAAGGTAAGAGCCCCTTCAGCGTCAGGGTACAGTGTGTGGACTTTGTCCAACTTCAGCGCATGGCAGAATACAGCGTTACCACGCACAAAGGGAGCAACCCGTTCATCCGTGCTGTGGCAGTGTGTGAGGAGAAAAACTCCACATGGAAAAAGAACATGGAGGATGTGACCATTTTTCATGAGGGGTATGGAGGCAAAGAGGGGACCAGCTTTTTCGGGGTCTTTGACGGGTTTCACGGACAGATTTCTGCAGTTACAGCATCTAGGGAGATGCCTGTTTTAGTCCTGGAGCAACTCTCCAAACAGGACCCCTTGCTCTCCTTGGAGAAGGACCAGGTGAAGCTACTGTCACGCTTTGAAGCCCTGTTCCAGAAAGACTACAACAGACCTTACCCAGGCCAGGCCCAGAACATTGGACTAGGCCTAGGCCCCGAGCAGCTGGAGAATCTGACCAATATGGAACAGGTGAACCTAGCCTTCACCACAGCCTTCTGGAAGATGGACCGGGTCCTGGGGCTTGGCAAGAACGAGACCTCCAAGATCCGCTGGAGTGGCTGCACAGCGCTCCTCTGCCTGATCGACAGTGGGCTGCCCTCCTCAGACGGGAAGGAGCAGGGAACAGGACAGGAGAGTAATACACCAACCCCCTCACAGGAGTTACAGGGTGGAAGAATTCTCATTGCTAACTGTGGTAATGTCCATGCGGTGCTGTACAAACAAGGCAGGGGCTTTCGTCTGACCAAAGACCACAGCACGTCCAACCCTAAAGAGCGCAAACGCATCCTCCAGTCCGGAGGGGCAATCAGCGTCAACAAACAGCACGGTCTGGTGGAGGGGCTGACTGAGGCCACCCGAGGGCTTGGTCATTATGGCGATCGCAAGCTGAAAAAGTCAGTCATCCCTGTGCCTTACTCTGTGTCGCTGCCCACGGACCCATCCTTCCAGATGCTGGTCCTAGCGTCCAGTGGCCTCTGGGAAGTCTTGGATGAGCATGCAGTGGCTGAGAGAGCTCTGACTGTCATTGAGTTGACTCAACAGAAATTAATAGTGAAGACCCTGTGCCTCATGCAAACTGTTGAGGATTCGTCCGTTTCAGATTCTCAAAGTTGCATACAGTCAAGACCAGGGTCATCTATTTTTGATAGTGAAGAACCTTCCAGTGTCAAGGATGAGGACAACCCACCAGAGTTGGACATGCCAGAGCCTCTGGGGGTACAAGCTAGAGATATTCAGAAtgcagaggaaacagagagacatCAATCCCTAGTCCTGCAGCAGGAGAGTGAGGTCAATGTGAAGGGAACTATGGCTGACAGTCTGAAGAATCTCACCTTGGACTACGAGCGCCTTGCAGCTGACATTTGTAGAGAGCTCGTGGACACAGCATTGGTCTCAGGTTCaagggaaaacatttcagtcatgGTCATACTTCTTCATGGGTTGGATGTGCTCAGAGAAAACACTCTCAAAGGAGAGTTGACAAAGCAAACAAATACCATGTAA

Function

symbol description
pp2d1 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation.

NR:

description
protein phosphatase 2C-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619730.2 True 1647 mRNA 0.52 3 34186054 34188011

Neighbor

gene id symbol gene type direction distance location
LOC110534769 efhb coding downstream 14336 34170745 ~ 34171718 (-)
LOC110487942 LOC106582030 coding downstream 51820 34074555 ~ 34134234 (-)
LOC110487899 LOC106605274 coding downstream 335289 33779193 ~ 33850765 (-)
LOC110487833 LOC106581966 coding downstream 453610 33725770 ~ 33732444 (-)
LOC110487821 LOC106605277 coding downstream 470407 33712265 ~ 33715647 (-)
LOC110488012 LOC106605268 coding upstream 5648 34193659 ~ 34234849 (-)
nek10 nek10 coding upstream 182805 34370816 ~ 34384026 (-)
LOC110488086 LOC105021885 coding upstream 218056 34406067 ~ 34422793 (-)
LOC110488127 ica69 coding upstream 277055 34465066 ~ 34475371 (-)
LOC110488138 LOC106605258 coding upstream 296054 34484065 ~ 34493285 (-)
G135143 NA non-coding downstream 20381 34165356 ~ 34165673 (-)
G134863 NA non-coding downstream 139555 34046259 ~ 34046499 (-)
G134859 NA non-coding downstream 141848 34043750 ~ 34044206 (-)
G134811 NA non-coding downstream 168217 34017530 ~ 34017837 (-)
G135170 NA non-coding upstream 28806 34216817 ~ 34217054 (-)
G135210 NA non-coding upstream 128720 34316731 ~ 34317466 (-)
G135255 NA non-coding upstream 173255 34361266 ~ 34361592 (-)
G135262 NA non-coding upstream 178873 34366884 ~ 34367175 (-)
G135265 NA non-coding upstream 179486 34367497 ~ 34368075 (-)
G134668 NA other downstream 320117 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 960952 33208500 ~ 33225125 (-)
G134102 NA other downstream 1397933 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 1434476 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 2537259 31631886 ~ 31648795 (-)
G135575 NA other upstream 416204 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1118356 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 1486287 35674291 ~ 35700846 (-)
G137479 NA other upstream 2181993 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 2446182 36634193 ~ 36639005 (-)

Expression


Co-expression Network