LOC110488012 (LOC106605268)


Basic Information

Item Value
gene id LOC110488012
gene name LOC106605268
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34193659 ~ 34234849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559966.2
cagaggaagagagaacagaggacagaggaagatAGGTAGTTAAAGAAAGAAGTAAAGAAAGAAAGATATtaaaaggagagaaaagagggaaagaTATATCGAAAGTGTGAGAGAGGCAACGGGGAGAGTTTTACACAAAGAAGAGACGGACAGAGaagaaacccagagagagagagagcgagagagagagagagagagaggctgtagcTGGAAAATGTAGATAGACaccttggagaggagagaagcacGCAGAGGGGCCAGCGCTCaagtagagtagagaggagattgtacaggaggacgggaggagaaaagaggggaggagagaccggCAGAACCAgcaagacgagagagagagcagcgtgtggagagaaagagagagcgagagagacgaagGAGGGGGACACAGACCACTGTGAGAGGAGGGTGCCGGCTTTGCACGGTAACGGCTGCAGACacgacacacagacagagagacggactacagagctccacacacacacactcacacaaacacacataaagaGTGTGTGAGACATGCCCAGGCTGCTgcccatggacacacacacacacaacctggcaGGGCATCCGAGAGGACATACAGACCCCTATGTCTAAGGAGTCATGGAGAGCAGCATGTTTTTCGGTAATGCATGTCAAAATGGCCTCCTGCCGACGCTGATACGTCCTGCTCTACCCACCATCCAGCAGTCTCTGGGCATGAAGCAGTTCCATCTCCCGTTTCCCCTGGATACGGCCTCAGCAGTCAGCCTCTTCCCCAGCTTCAGCATGatGGACCCAGTTCAGAAAGCTGTTATGCATCACACGTTTGGAGTTCATCCCTTGACGAAAAGAAGACACGTCTCGTGCAGCGTGTGCCAACTGAGATTCAACTCACAGAGCCAAGCCGTAGCCCACTACAAAGGAACAAAACATGCCAAGAAGCTGAAATCTCTGGAAGCTACCAAATGTAAGCTCAAAGGTACAGTGGTCACCAAGGAAACCACCAACCAGGAAGTCCCTAAGAGCATCAACCCTCCAGCAATGTGCTACAGCACTGGCAGGAAAGATGGCTTTCCAGGTGCATCGCCACTCCCACTATCTCCTGTGCTCACACTGGCTCCAACCCTGGGATCCCTGACATCAACCCTGGCACCCATGACATCAATGTTACCACCCCTGGTACCTACGCTGGCATCGAGTCCCAATTCATCCACAGGGACAGAGACTACCTCAGCTACAGGATGGGATGACAGGGCCTCGCCCAAATCCAGCTCACCTTTAGAACCAGACATGGAGGTGGAGCAAGAGGCTGAGACAGACccggagacagaggaagagaaagcCAGGCGTCTGCTCTACTGCTCGCTCTGCAAGATGGCCGTCAACTCGGCATCCCAACTGGAGGCTCATAACAGCGGTACGAAGCACAAGACCATGCTAGAGGCCAGGAGTGGTGTGGGCTCCATCAAGTCCTTCCCCCGGCCAGGGGTCAAGAGTAAGCTAGCTCCGCCCACCAAGGCAGCCACGGGCCTGCagaacaaaacatttcactgtgagaTCTGCGATGTGCACGTCAACTCCGAGACACAGCTAAAACAGcaCATCAGCAGCAGACGTCACAAAGACCGAGCGGCGGGCAAACCGGCCAAACCCAAATACAGTCCCTACAGTAAACCCCCGAAAGTCCAGGCCACACAACCAGTGAAGCTGACAGTGGGGAAGGAGTTGTGCCAACCTCAGATCACCCAGATAATGCCCGCTCACCTGGCAGCATTGgcatcagcagcagcagccatGGGCTCGGCCTTCCCCGGCCTCCGCTCCACCCATGCTCCCTCCCATGGCCCCACCCTTTTTCCGACACAGACCCTCCCTGCTGCCCTGCTCCGCCCCGCCCCCGGGCCTGTCAGGACCTCCCATACACAGTTACTGTTTGCCCCCTACTGACTCACAACCCCACCATATAGACTCTATGGACTTCCCATGACGGCCGTGCCACAGAAGTTGTTATGAACCAGAGTCCTCTTCCCTCTGCTTATCCCTTTATACATTTGGACCATAGGCCACCTTCACCAGAATATGGGGATAATAGGCACACAGGAATTGTTTAACCCATACTGCCAGATAAACCCTACTGGGCTGGCCAGACCTCCCGTTATGGATTTCCAAAGGAACCCATCAATGGCCTAGAATTGATCAGTGTCCCCCTTCCCTCTGCTGTTCCCCCTACATTCAGAGAAGAACCACACCGGAACGAATAATGGCTAAAATAAATAGATGGGCGCGGTGTGTTAgcgatcacctgctgggtgtgaACGATCCAACATGTAGAATCTTGGGGAAATAACCTCAAATAATAGCAGATATTCTGGTCAGTGGCGATAGGACGGCCACCCACGGCTTTTAACCAACCGTTTGTCGCCCTGGTGTGTTTCCTCTGAAGACTACGATCTTCACCAAAACATATGGACTCCAGACAACCTGAAGCATTACATCTGGACTACTGCCCACTCTATTCCATTTGGGTTACTACTGCTCTACAGTATTAACCCTGCATTTCCCGTTCCACTTGACTACAGGCCAGTCTCTTCATTACTGTAGAACCACCCTGTCGAATCTACTCGTTCATCTTCACAGAGTCATTGACTCATCACAATTCCCTCCTATAGTAGCTAGTACTTAGTCGTACCCACACAGACACCCCTTCTAGTATTACAAGGCTACTTAGCCCCAAACGTTCCTGTGCCATTCTCTTGTCCTTGAATCATACCCAAGAACAGGACTCGGAGTTATATTGTACTGCAATAATGTATAAGACAAACCAGTGAACTATGCAGTGTCATTTCTGTCTAATGCGAGGCACAGTTTGAGCTATAAATGTGTTATAGGGATATCATATTTGCAGAGATAGTGTCGCACTAAGATCATTGCTTCAGTGGAGGTAGTTATCACTCACGGCTGATACGGATCTCCTCTTTTGCTGTATGCACTTTAAGTCCCCCCTCTGTTGACGTCTGCAGTGCATTAGCTGGCTAGAGTATGTGTTGTAGTTCCTCTTGCATTACGTGTATGTGTCTGTTGGTGTGTAAGTGtttgtttctttgtgtgtgtgcgtatgtgtgtgggtgtgtgtatatgggtgtttgtgtgtgacctTGCCCTCCACCTTAAAGCCATCCCAGCTGACACCCAATAACCATTCTGAATGACCACGTCATGGTTTAAAGGGACCACTAATGCTTGTGTATAATATCTGTTAATGTGTAAAAGATGAACAATTTCAAATAAAAGAGTCTTACTTTGTTAA
>XM_036946595.1
acagaggaagagagaacagaggacagaggaagatAGGTAGTTAAAGAAAGAAGTAAAGAAAGAAAGATATtaaaaggagagaaaagagggaaagaTATATCGAAAGTGTGAGAGAGGCAACGGGGAGAGTTTTACACAAAGAAGAGACGGACAGAGaagaaacccagagagagagagagcgagagagagagagagagagaggctgtagcTGGAAAATGTAGATAGACaccttggagaggagagaagcacGCAGAGGGGCCAGCGCTCaagtagagtagagaggagattgtacaggaggacgggaggagaaaagaggggaggagagaccggCAGAACCAgcaagacgagagagagagcagcgtgtggagagaaagagagagcgagagagacgaagGAGGGGGACACAGACCACTGTGAGAGGAGGGTGCCGGCTTTGCACGGTAATGCATGTCAAAATGGCCTCCTGCCGACGCTGATACGTCCTGCTCTACCCACCATCCAGCAGTCTCTGGGCATGAAGCAGTTCCATCTCCCGTTTCCCCTGGATACGGCCTCAGCAGTCAGCCTCTTCCCCAGCTTCAGCATGatGGACCCAGTTCAGAAAGCTGTTATGCATCACACGTTTGGAGTTCATCCCTTGACGAAAAGAAGACACGTCTCGTGCAGCGTGTGCCAACTGAGATTCAACTCACAGAGCCAAGCCGTAGCCCACTACAAAGGAACAAAACATGCCAAGAAGCTGAAATCTCTGGAAGCTACCAAATGTAAGCTCAAAGGTACAGTGGTCACCAAGGAAACCACCAACCAGGAAGTCCCTAAGAGCATCAACCCTCCAGCAATGTGCTACAGCACTGGCAGGAAAGATGGCTTTCCAGGTGCATCGCCACTCCCACTATCTCCTGTGCTCACACTGGCTCCAACCCTGGGATCCCTGACATCAACCCTGGCACCCATGACATCAATGTTACCACCCCTGGTACCTACGCTGGCATCGAGTCCCAATTCATCCACAGGGACAGAGACTACCTCAGCTACAGGATGGGATGACAGGGCCTCGCCCAAATCCAGCTCACCTTTAGAACCAGACATGGAGGTGGAGCAAGAGGCTGAGACAGACccggagacagaggaagagaaagcCAGGCGTCTGCTCTACTGCTCGCTCTGCAAGATGGCCGTCAACTCGGCATCCCAACTGGAGGCTCATAACAGCGGTACGAAGCACAAGACCATGCTAGAGGCCAGGAGTGGTGTGGGCTCCATCAAGTCCTTCCCCCGGCCAGGGGTCAAGAGTAAGCTAGCTCCGCCCACCAAGGCAGCCACGGGCCTGCagaacaaaacatttcactgtgagaTCTGCGATGTGCACGTCAACTCCGAGACACAGCTAAAACAGcaCATCAGCAGCAGACGTCACAAAGACCGAGCGGCGGGCAAACCGGCCAAACCCAAATACAGTCCCTACAGTAAACCCCCGAAAGTCCAGGCCACACAACCAGTGAAGCTGACAGTGGGGAAGGAGTTGTGCCAACCTCAGATCACCCAGATAATGCCCGCTCACCTGGCAGCATTGgcatcagcagcagcagccatGGGCTCGGCCTTCCCCGGCCTCCGCTCCACCCATGCTCCCTCCCATGGCCCCACCCTTTTTCCGACACAGACCCTCCCTGCTGCCCTGCTCCGCCCCGCCCCCGGGCCTGTCAGGACCTCCCATACACAGTTACTGTTTGCCCCCTACTGACTCACAACCCCACCATATAGACTCTATGGACTTCCCATGACGGCCGTGCCACAGAAGTTGTTATGAACCAGAGTCCTCTTCCCTCTGCTTATCCCTTTATACATTTGGACCATAGGCCACCTTCACCAGAATATGGGGATAATAGGCACACAGGAATTGTTTAACCCATACTGCCAGATAAACCCTACTGGGCTGGCCAGACCTCCCGTTATGGATTTCCAAAGGAACCCATCAATGGCCTAGAATTGATCAGTGTCCCCCTTCCCTCTGCTGTTCCCCCTACATTCAGAGAAGAACCACACCGGAACGAATAATGGCTAAAATAAATAGATGGGCGCGGTGTGTTAgcgatcacctgctgggtgtgaACGATCCAACATGTAGAATCTTGGGGAAATAACCTCAAATAATAGCAGATATTCTGGTCAGTGGCGATAGGACGGCCACCCACGGCTTTTAACCAACCGTTTGTCGCCCTGGTGTGTTTCCTCTGAAGACTACGATCTTCACCAAAACATATGGACTCCAGACAACCTGAAGCATTACATCTGGACTACTGCCCACTCTATTCCATTTGGGTTACTACTGCTCTACAGTATTAACCCTGCATTTCCCGTTCCACTTGACTACAGGCCAGTCTCTTCATTACTGTAGAACCACCCTGTCGAATCTACTCGTTCATCTTCACAGAGTCATTGACTCATCACAATTCCCTCCTATAGTAGCTAGTACTTAGTCGTACCCACACAGACACCCCTTCTAGTATTACAAGGCTACTTAGCCCCAAACGTTCCTGTGCCATTCTCTTGTCCTTGAATCATACCCAAGAACAGGACTCGGAGTTATATTGTACTGCAATAATGTATAAGACAAACCAGTGAACTATGCAGTGTCATTTCTGTCTAATGCGAGGCACAGTTTGAGCTATAAATGTGTTATAGGGATATCATATTTGCAGAGATAGTGTCGCACTAAGATCATTGCTTCAGTGGAGGTAGTTATCACTCACGGCTGATACGGATCTCCTCTTTTGCTGTATGCACTTTAAGTCCCCCCTCTGTTGACGTCTGCAGTGCATTAGCTGGCTAGAGTATGTGTTGTAGTTCCTCTTGCATTACGTGTATGTGTCTGTTGGTGTGTAAGTGtttgtttctttgtgtgtgtgcgtatgtgtgtgggtgtgtgtatatgggtgtttgtgtgtgacctTGCCCTCCACCTTAAAGCCATCCCAGCTGACACCCAATAACCATTCTGAATGACCACGTCATGGTTTAAAGGGACCACTAATGCTTGTGTATAATATCTGTTAATGTGTAAAAGATGAACAATTTCAAATAAAAGAGTCTTACTTTGTTAA

Function

NR:

description
zinc finger protein 385D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559966.2 False 3307 mRNA 0.51 8 34193659 34234848
XM_036946595.1 True 3104 mRNA 0.50 8 34193659 34234849

Neighbor

gene id symbol gene type direction distance location
LOC110534780 pp2d1 coding downstream 5648 34186054 ~ 34188011 (-)
LOC110534769 efhb coding downstream 21941 34170745 ~ 34171718 (-)
LOC110487942 LOC106582030 coding downstream 59425 34074555 ~ 34134234 (-)
LOC110487899 LOC106605274 coding downstream 342894 33779193 ~ 33850765 (-)
LOC110487833 LOC106581966 coding downstream 461215 33725770 ~ 33732444 (-)
nek10 nek10 coding upstream 135967 34370816 ~ 34384026 (-)
LOC110488086 LOC105021885 coding upstream 171218 34406067 ~ 34422793 (-)
LOC110488127 ica69 coding upstream 230217 34465066 ~ 34475371 (-)
LOC110488138 LOC106605258 coding upstream 249216 34484065 ~ 34493285 (-)
LOC110534798 LOC106582184 coding upstream 258673 34493522 ~ 34600391 (-)
G135143 NA non-coding downstream 27986 34165356 ~ 34165673 (-)
G134863 NA non-coding downstream 147160 34046259 ~ 34046499 (-)
G134859 NA non-coding downstream 149453 34043750 ~ 34044206 (-)
G134811 NA non-coding downstream 175822 34017530 ~ 34017837 (-)
G135210 NA non-coding upstream 81882 34316731 ~ 34317466 (-)
G135255 NA non-coding upstream 126417 34361266 ~ 34361592 (-)
G135262 NA non-coding upstream 132035 34366884 ~ 34367175 (-)
G135265 NA non-coding upstream 132648 34367497 ~ 34368075 (-)
G135409 LOC106605262 non-coding upstream 149706 34384555 ~ 34393407 (-)
G134668 NA other downstream 327722 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 968557 33208500 ~ 33225125 (-)
G134102 NA other downstream 1405538 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 1442081 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 2544864 31631886 ~ 31648795 (-)
G135575 NA other upstream 369366 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1071518 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 1439449 35674291 ~ 35700846 (-)
G137479 NA other upstream 2135155 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 2399344 36634193 ~ 36639005 (-)

Expression


Co-expression Network