ube2e2 (LOC106582102)


Basic Information

Item Value
gene id ube2e2
gene name LOC106582102
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34279641 ~ 34317474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559979.2
GTCCGGCTTCTTCAGTTTTCTGTAATCGTTTTTCGGTTGCTACCTTCAGTTAAATAGCAAGGACACGAGTGCGAGCAGACGGCCGAGTGTGTGGATATACTTTTCACCTGGGATTTTAATTCTAAATACAGCATCGACGGTCAGCTGCCAGGGCCAGGATGTCCAGTGAGGTGCAGAGACCAGACGACAGCCCCAGCACCAGTGGGGGGAGCTCGGATATCGAACAAAGAGAATCATCAGTACCCCCAGAACAGGAGCGGGAACAAGCACAGCCCAAAAAGAAGGAGACCAAGATCTCCAGTAAAACAGCTGCCAAACTCTCAACCAGTGCCAAGAGGATTCAGAAAGAACTTGCAGAAATTACACTCGACCCACCTCCAAACTGCAGCGCCGGCCCCAAAGGAGACAACATCTACGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTCGACATCGCCTTCACACCCGACTACCCCTTCAAACCACCCAAGGTAACATTTCGGACGAGGATCTACCACTGTAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCTGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCGGACCCTCTGGTGGGGAGCATTGCCACACAATACCTGACAAACAGAACGGAACATGACAGAATAGCCAAGCAGTGGACGAAGAGATACGCCACATAGAGCCCCCTGTCTGACTTTTccactgtcacccccccccccaccccacccccactgtacttctctacctctctccccagcctttcaaagcacactCACTAAGTGCAATGTTATACCTGTAATCCCCCCCACCCAAAACTTTGTATCTACCTTTTCTTTGTAAAGAACTGTCCTTTGTTCCTTGTTGACTTGAAAGCTTCTTTTTTTATACAAAGAGTAGATTGggattttattttccaatatcTGAATGTTGGAATTAATGTATTGAAAAAAGACAATTATTCTAATAAGCATTGTCCCTCaactatacagtatgtatccttgTTTTCATAGTGGCTCCAGGAACAAAATGCAGATTATATACTCTTTTTACTTTAGGTTCTTGTGTATTTTTTAATTTCCTATTCCAGTCATCAATGGTATCTGCATGGAACAGAAGGAAGATTTGCATCAAATGACTTGTCTTCTACGCTTTCTGGTTTtgtttgtactgtatgtattttttcAAACGCTTTTGAGGCAGACCACAGAAATATAGGTCTGCTTGTGAAAGAGGCAGGACTTGTACATTTACCGGCTACTCTGGCATGGCAGGGTGGTTTGTTGTGCACTTGTATTAATGAAGCACCCAATAAAACACTGGTTGGCTTGTGAGA
>XM_021559985.2
ACTGCAATATCCGTTCTGACAGACAGAGAAGGTTATAGCCTTCATCATATATGTTTTCGAATGTTTGTTCAAATTGCAGCAGGGTTTTTATTTCAACTGTTCAGAAATATGAGGTAGAGACGGGCTACATCAACATGGATGTAAGAAGAGGCGCCGGCCCCAAAGGAGACAACATCTACGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTCGACATCGCCTTCACACCCGACTACCCCTTCAAACCACCCAAGGTAACATTTCGGACGAGGATCTACCACTGTAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCTGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCGGACCCTCTGGTGGGGAGCATTGCCACACAATACCTGACAAACAGAACGGAACATGACAGAATAGCCAAGCAGTGGACGAAGAGATACGCCACATAGAGCCCCCTGTCTGACTTTTccactgtcacccccccccccaccccacccccactgtacttctctacctctctccccagcctttcaaagcacactCACTAAGTGCAATGTTATACCTGTAATCCCCCCCACCCAAAACTTTGTATCTACCTTTTCTTTGTAAAGAACTGTCCTTTGTTCCTTGTTGACTTGAAAGCTTCTTTTTTTATACAAAGAGTAGATTGggattttattttccaatatcTGAATGTTGGAATTAATGTATTGAAAAAAGACAATTATTCTAATAAGCATTGTCCCTCaactatacagtatgtatccttgTTTTCATAGTGGCTCCAGGAACAAAATGCAGATTATATACTCTTTTTACTTTAGGTTCTTGTGTATTTTTTAATTTCCTATTCCAGTCATCAATGGTATCTGCATGGAACAGAAGGAAGATTTGCATCAAATGACTTGTCTTCTACGCTTTCTGGTTTtgtttgtactgtatgtattttttcAAACGCTTTTGAGGCAGACCACAGAAATATAGGTCTGCTTGTGAAAGAGGCAGGACTTGTACATTTACCGGCTACTCTGGCATGGCAGGGTGGTTTGTTGTGCACTTGTATTAATGAAGCACCCAATAAAACACTGGTTGGCTTGTGAGA
>TU155477
TTGTAATGCTATAGGAGAATTGATCAATCAACATGTGGATAATAGTCATGTCATTCCCTTCTTTAAGAGTTAAAGGAGACTCTCAAAACACTTTACTCTTGGTTCTTGTGTATTTTTTAATTTCCTATTCCAGTCATCAATGGTATCTGCATGGAACAGAAGGAAGATTTGCATCAAATGACTTGTCTTCTACGCTTTCTGGTTTtgtttgtactgtatgtattttttcAAACGCTTTTGAGGCAGACCACAGAAATATAGGTCTGCTTGTGAAAGAGGCAGGACTTGTACATTTACCGGCTACTCTGGCATGGCAGGGTGGTTTGTTGTGCACTTGTATTAATGAAGCACCCAATAAAACACTGGTTGG

Function

NR:

description
ubiquitin-conjugating enzyme E2 E2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559979.2 False 1420 mRNA 0.47 6 34286450 34317474
XM_021559985.2 False 1183 mRNA 0.44 4 34296996 34317474
TU155477 True 370 lncRNA 0.34 2 34279641 34317465

Neighbor

gene id symbol gene type direction distance location
LOC110488005 rab5a coding upstream 100486 34177043 ~ 34185964 (+)
LOC118939520 NA coding upstream 117200 34164350 ~ 34169250 (+)
LOC110487926 LOC106605271 coding upstream 341050 33887839 ~ 33945400 (+)
LOC110487915 LOC106582023 coding upstream 406342 33873905 ~ 33880108 (+)
LOC110487876 NA coding upstream 527658 33749647 ~ 33758792 (+)
LOC110488035 LOC106582094 coding downstream 134 34317608 ~ 34324592 (+)
nr1d2a LOC106582110 coding downstream 10476 34327950 ~ 34335871 (+)
LOC110488056 LOC106605265 coding downstream 32744 34350218 ~ 34366288 (+)
LOC110488078 LOC106605262 coding downstream 67032 34384506 ~ 34396588 (+)
LOC110534788 NA coding downstream 80840 34398314 ~ 34405885 (+)
G134970 NA non-coding upstream 116023 34170099 ~ 34170427 (+)
G134964 NA non-coding upstream 129603 34156616 ~ 34156847 (+)
G134925 NA non-coding upstream 172827 34108647 ~ 34113623 (+)
G134898 NA non-coding upstream 213188 34073044 ~ 34073262 (+)
G135261 NA non-coding downstream 49258 34366732 ~ 34367044 (+)
G135295 LOC106582155 non-coding downstream 90678 34408152 ~ 34408477 (+)
G135316 NA non-coding downstream 151415 34468889 ~ 34470198 (+)
G135341 LOC106582184 non-coding downstream 193006 34510480 ~ 34511713 (+)
G135380 thsd7a non-coding downstream 237099 34554573 ~ 34555365 (+)
G134735 LOC100136012 other upstream 323792 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 471967 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 789165 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1117072 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2398878 31834170 ~ 31887572 (+)
si:dkey-30e9.6 LOC106605205 other downstream 370481 34687955 ~ 34692286 (+)
G135916 NA other downstream 654166 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 654975 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 667498 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 834286 35151760 ~ 35153650 (+)

Expression


Co-expression Network