LOC110488035 (LOC106582094)


Basic Information

Item Value
gene id LOC110488035
gene name LOC106582094
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34317608 ~ 34324592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560004.2
GGAATCAGTGAAACCAGGGTCAAATAGACTACAGCAGAAGAAACTGCATCACAGGTCTAGGTTAGGGGTGGGCATGAACCATAGACCATATATGAACCTCTCTTTCACCTTGACTTGGTTACACCATATTCAGTGATGCTCCAAATTTTATTTTGGCCCTCATTCGACATGTGCTTTTTCGTGCATCTTTTGTTTAATGTGTGATATCAAAATGTCAGATCAGTCTACGAAGACCTAATGTTGAATGATCCTTGTGCGCCGATTTGCCTTCATTATTGTGAGTGCGCGATATGAATCCACTGCACCCGCGGCACTTCCGTTCCACAGAAGGCGATTTGCACGAGCACAGGCAGTGGAGAGATCCAGACACAAAGGAGGTTCCTTCTAATTTCTTGTCCAAACCGGTATGTCGGATAAGGATTCGTGTGTCAGCACCAGCTCTtcgtcttcttcctcctccaatCAAAACAAACCGAAAGACACACCTTGCAAGAAACGGGAGAGCAAAGCCAGTATGAGCAAGACCTCCAAGCTGCTATCCACCAGCGCAAAGAGGATTCAGAAAGAGCTGGCAGATATCACGCTGGACCCTCCGCCAAACTGCAGCGCTGGTCCAAAAGGAGACAACATTTACGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTCGACATCGCCTTCACACCCGACTACCCCTTCAAACCACCCAAGGTAACGTTTCGGACGAGGATCTACCACTGTAACATCAACAGTCAAGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCTGATCCCCTGGTTGGAAGCATCGCCACCCAGTACACGACAAACAGAGCCGAGCATGATAGAACAGCCAAACAGTGGACGAAGCGGTACGCCACATAGGCCCATAGAGCACAGCCGTGTGGGGGGGGGTTTCTATTTCAGATTTTTAGTACTTTATTGTCTGGTATATTTTTGGGGTTCCTGATTAAGTTAtctgtgaaaataaagaaaaacaatgaAACAATA
>XM_021559996.2
AGGTCTAGGTTAGGGGTGGGCATGAACCATAGACCATATATGAACCTCTCTTTCACCTTGACTTGGTTACACCATATTCAGTGATGCTCCAAATTTTATTTTGGCCCTCATTCGACATGTGCTTTTTCGTGCATCTTTTGTTTAATGTGTGATATCAAAATGTCAGATCAGTCTACGAAGACCTAATGTTGAATGATCCTTGTGCGCCGATTTGCCTTCATTATTGTGAGTGCGCGATATGAATCCACTGCACCCGCGGCACTTCCGTTCCACAGAAGGCGATTTGCACGAGCACAGGCAGTGGAGAGATCCAGACACAAAGGAGGATTCGTGTGTCAGCACCAGCTCTtcgtcttcttcctcctccaatCAAAACAAACCGAAAGACACACCTTGCAAGAAACGGGAGAGCAAAGCCAGTATGAGCAAGACCTCCAAGCTGCTATCCACCAGCGCAAAGAGGATTCAGAAAGAGCTGGCAGATATCACGCTGGACCCTCCGCCAAACTGCAGCGCTGGTCCAAAAGGAGACAACATTTACGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTCGACATCGCCTTCACACCCGACTACCCCTTCAAACCACCCAAGGTAACGTTTCGGACGAGGATCTACCACTGTAACATCAACAGTCAAGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCTGATCCCCTGGTTGGAAGCATCGCCACCCAGTACACGACAAACAGAGCCGAGCATGATAGAACAGCCAAACAGTGGACGAAGCGGTACGCCACATAGGCCCATAGAGCACAGCCGTGTGGGGGGGGGTTTCTATTTCAGATTTTTAGTACTTTATTGTCTGGTATATTTTTGGGGTTCCTGATTAAGTTAtctgtgaaaataaagaaaaacaatgaAACAATA
>XM_021560013.2
TCATTATTGTGAGTGCGCGATATGAATCCACTGCACCCGCGGCACTTCCGTTCCACAGAAGGCGATTTGCACGAGCACAGGCAGTGGAGAGATCCAGACACAAAGGAGGACTCCAGGAGCGAAGAGGCCATAGCAAGTAACTCCAGACCAGAgatattagctagcaagctaacattaATTACTGTGAAGAAGGCCCGAGAATGTTCCCATCAAATGGTTGGCCACAAAGACTAACTAACTAGCTGTTGTTCACCACCATGGATCCATTTGTTCCTTCTGGGCGCCTTTAGTATTAGCTGACGGTTCCTTCTAATTTCTTGTCCAAACCGGTATGTCGGATAAGGATTCGTGTGTCAGCACCAGCTCTtcgtcttcttcctcctccaatCAAAACAAACCGAAAGACACACCTTGCAAGAAACGGGAGAGCAAAGCCAGTATGAGCAAGACCTCCAAGCTGCTATCCACCAGCGCAAAGAGGATTCAGAAAGAGCTGGCAGATATCACGCTGGACCCTCCGCCAAACTGCAGCGCTGGTCCAAAAGGAGACAACATTTACGAGTGGAGGTCAACCATCCTGGGACCACCGGGCTCTGTTTACGAGGGAGGGGTCTTTTTCCTCGACATCGCCTTCACACCCGACTACCCCTTCAAACCACCCAAGGTAACGTTTCGGACGAGGATCTACCACTGTAACATCAACAGTCAAGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCTCTGCTCACAGACTGTAACCCAGCTGATCCCCTGGTTGGAAGCATCGCCACCCAGTACACGACAAACAGAGCCGAGCATGATAGAACAGCCAAACAGTGGACGAAGCGGTACGCCACATAGGCCCATAGAGCACAGCCGTGTGGGGGGGGGTTTCTATTTCAGATTTTTAGTACTTTATTGTCTGGTATATTTTTGGGGTTCCTGATTAAGTTAtctgtgaaaataaagaaaaacaatgaAACAATA

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 E1 isoform X1

GO: NA

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560004.2 False 1111 mRNA 0.48 6 34317608 34324592
XM_021559996.2 False 1018 mRNA 0.49 6 34317660 34324592
XM_021560013.2 True 1036 mRNA 0.50 7 34317877 34324592

Neighbor

gene id symbol gene type direction distance location
ube2e2 LOC106582102 coding upstream 134 34279641 ~ 34317474 (+)
LOC110488005 rab5a coding upstream 131644 34177043 ~ 34185964 (+)
LOC118939520 NA coding upstream 148358 34164350 ~ 34169250 (+)
LOC110487926 LOC106605271 coding upstream 372208 33887839 ~ 33945400 (+)
LOC110487915 LOC106582023 coding upstream 437500 33873905 ~ 33880108 (+)
nr1d2a LOC106582110 coding downstream 3358 34327950 ~ 34335871 (+)
LOC110488056 LOC106605265 coding downstream 25626 34350218 ~ 34366288 (+)
LOC110488078 LOC106605262 coding downstream 59914 34384506 ~ 34396588 (+)
LOC110534788 NA coding downstream 73722 34398314 ~ 34405885 (+)
LOC110488092 LOC106605261 coding downstream 98798 34423390 ~ 34432224 (+)
G134970 NA non-coding upstream 147181 34170099 ~ 34170427 (+)
G134964 NA non-coding upstream 160761 34156616 ~ 34156847 (+)
G134925 NA non-coding upstream 203985 34108647 ~ 34113623 (+)
G135261 NA non-coding downstream 42140 34366732 ~ 34367044 (+)
G135295 LOC106582155 non-coding downstream 83560 34408152 ~ 34408477 (+)
G135316 NA non-coding downstream 144297 34468889 ~ 34470198 (+)
G135341 LOC106582184 non-coding downstream 185888 34510480 ~ 34511713 (+)
G135380 thsd7a non-coding downstream 229981 34554573 ~ 34555365 (+)
G134735 LOC100136012 other upstream 354950 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 503125 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 820323 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1148230 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2430036 31834170 ~ 31887572 (+)
si:dkey-30e9.6 LOC106605205 other downstream 363363 34687955 ~ 34692286 (+)
G135916 NA other downstream 647048 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 647857 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 660380 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 827168 35151760 ~ 35153650 (+)

Expression


Co-expression Network