nr1d2a (LOC106582110)


Basic Information

Item Value
gene id nr1d2a
gene name LOC106582110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34327950 ~ 34335871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560024.2
ACACTATTTAGAACATTGAGTACAGAAGAGTCATCGTACAGAAGAGTCATCCAACAAGGGAGTTCGTCCAGCGTTTCTCATCTTGTTAGAGATCTTTAAATATACAAAAACTATTCGGGTTGTAATAGATGCCATTGAAAAGTCGCGGGAACATTTTGGCTGAAAGAAGAGCAGAATTTGTTTTGTTCAGGATACTGACAGTGGAGTGCAGATAATTATATTAATGCCACTAATATTTACTACAGTAATGTAGTTGAGATTAAAATAAGAAACAGTGTTGAGTTTTAGATGATCGACGCTTTGAATTTGAGTTTAACCGCTGTGCTACTAAGGATAATAGCACCTTGCAATCCTTACAGAAAACATCCAGTTGACATTGTGAAACAGGCGAGTTATTGACAAGACATTTAGTCAGCATAGGTTGCTTTCTCTAAAGATTTTCAGAATCGAGGTGCCTGCAGACATGGGCTCAATCAAGCCTGGTGGTGTCATAGCCTACATCTCTTCTGGCTCCGCCTCCAGCCCGGAGTGCTGTTTGAGTGACAGCTGCAGCAGCGGCTACCTGTGCTCCTCTCCGCCTCATCCCTCACTGCCAAGCCGGGCAGTAGGAATCATGGTGGACATCGCCAGCCCTACCACAGCCAAGCACCCACGTAGCCACAGCACAGACAAGACTGGGCGATCCACCTCCACCAAGAGCAGCATCACCAAGATCAACGGCATGGTGTTGTTGTGTAAGGTGTGCGGCGACGTGGCCTCGGGGTTCCACTATGGCGTCCACGCCTGCGAGGGCTGCAAGGGTTTCTTCAGGAGGAGCATCCAGCATAGCATCCGGTATAAGAAGTGCCTGAAGATGGAGAACTGCACCGTCATAAGGATCAACAGGAACCGCTGTCAGCAGTGCCGCTTCAAGAAGTGTCTGGCTGTGGGCATGTCTAGAGACTCTGTTAGGTTTGGCCGCATCCCAAAAAGAGAGAAGCAGCGCATGCTGCTGGAGATGCAGAACGCCATGAACAACATGATGATGAACAACAACAGCCAGCACCACAGTATGCTCCACGGCACCCAGAGTCCACCCTGCCCCATGGAAGGGCTCCCCAATGACGGCAGCTCCTCTTCATctgcctcttcttcctcctctatcTCGTCTTCATCAGGCTCCAACCCTTCCTCACCCTGTTCCGCTCAAGACTCCATGGAGACCAGCTCTAGCTCCGCCTCTTCCTGTTCATCGGATAGCGGCGATGACGAGGTTCCTCCTTCCAGGGTGTGTCACCAGGGCACATTCACGTACCGCCGTGAGCAGCAACAGTCCATCAAAGAGGAACCGGAGGAGTCACCTTCGCCGGTCGCCAGGGAAACTGtaaaagacaggagagacagcCGCATGGAGGAACTGCAGGAGAGCTGGAAACGCTGCGACCAAGACACCAGGGGTTACCAACCTAGTTGCAACAGCCATCAACACGTCACCAACGGTCCCTACCGGGAAGAGAGAGTTGTTTACCAGCAGCAGCCTGCGCAGCTAAACGGCGCCCCCAGTGGTAGAATGCCAGAAGATTCCTACAGCCTCCATCACAGGAGCCACAACATAATGCACAACATACAGACCGTCTCCAATGGTTACAGTAGACCATCATACAGCCTACAGGACCACAAGACAAACATGGTCACTCCTAGTCTCTATGTGGACCCCAGCCAGCGCAGCCAGGAGATCTGGGAGGAGTTCTCCCTGAGTTTCATCCCGGCCGTGCGCGAGGTGGTGGGGTTTGCCAAGAGGATCCCGGGCTTCCGCGACCTCTCCGAGTACGACCAAGTCAGCCTGCTCAAAAACGGAACATTTGAGgtgcttATGGTGTGCTTCGCTTCTCTGTTCGACGTGGCCGAGCGCACCGTGACCTTCCTGACGGGGAAGTGTTACAGCTTGGAGCTGCTGCACTCGCTGCGGGCCGGGCAGCTGCTCACCTCCATGTGTGACTTCAGCGAGAAGCTGGCCGCTCTGCAGCTGGACAAGGATGAGATGAGCCTCTTCATTGCTGTCGTCCTCGTCTCCGCCGATCGTTCGGGGATCCAGGACTTGAAGTCAGTGGAGGCGCTGCAGGACACGCTGATCCGAGCGCTGCGGAGTCTGATCATGACGAACCACGCCAACGAGACTACCACCTTCACCAAGCTGCTGCTGAAGCTGCCCGAGCTGCGCTCCCTCAACAACATACACTCTGAAGAACTGCTAGCCTTCAAAGTGCACTCGTAATGGGGCTCATCTGACTCCTAATACCCTCCTTCCACACTTTAAAACCAGGACTGACTTCCTCTGCCACTCCTATACCAGGACCAAGGGGAGACCTTGGTCCTGGAAATGATGAAGTGCAGAACTACTTGGTTTTGTTTGTTAAAGCCGTTTAATTCCAAAGTGTATTGCTCACGAGCAATGTGAATGTGATGATTATGCTCTCTTTTGGATGTTTCAAACGACGCGCAATATCAATTGGTCACTGTTTTCGACCCAATATGTTTGATAAAAGCCCTCAAGACTCAATGTAAACATCTATATCAAAAATAATGCTTGATTAATCAGATAATTGCTGCAATTGCATGGCTATCCTTAGGTGAACAACTTGACGTTGTCGCTCCCAACCCTCCGAGGAAGGAgtcatttctttatttttgaaTTGTTCAACTGCATTGTCATGTTTACTGTCCTTTGTGTACATAGGGTATTTCATTTGTCTGAATATTTTGAATATTTAATTTTTTGCCTGTCTTTGTCTCAGCTGCCTCTACCACGCCTCCTTCTGGGGACTTGTTGATAGTGCACTTTTTCAGCAACACAACTTTGCACATTGTGTTGTGGACCGTCAACCTCCAAAATCTCACATGCCACCACAGACCCACATCATGTGCGCATGATGTGAACACGATGATACTAAAGTGTTCCTTCACTGATTCCCCACCTTCCTCACAGTGAGGAGTTACTGGGGGGTTTTGACTTTACCTCCTGGCATTTCAGCACAGCACTGACTTTTAAAACTGATATTGTTTCCCATCTGTTGTTTTTTGGGGAATGTCTGTATTTGTCTCCTTTTACGGACAAGATTGCAGTTTGTAAATAAATAGTTATGCTATATCtatcatatatacatatatatatatatatatatatatataagtagtATAAATAAAT

Function

NR:

description
nuclear receptor subfamily 1 group D member 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560024.2 True 3184 mRNA 0.49 8 34327950 34335871

Neighbor

gene id symbol gene type direction distance location
LOC110488035 LOC106582094 coding upstream 3358 34317608 ~ 34324592 (+)
ube2e2 LOC106582102 coding upstream 10476 34279641 ~ 34317474 (+)
LOC110488005 rab5a coding upstream 141986 34177043 ~ 34185964 (+)
LOC118939520 NA coding upstream 158700 34164350 ~ 34169250 (+)
LOC110487926 LOC106605271 coding upstream 382550 33887839 ~ 33945400 (+)
LOC110488056 LOC106605265 coding downstream 14347 34350218 ~ 34366288 (+)
LOC110488078 LOC106605262 coding downstream 48635 34384506 ~ 34396588 (+)
LOC110534788 NA coding downstream 62443 34398314 ~ 34405885 (+)
LOC110488092 LOC106605261 coding downstream 87519 34423390 ~ 34432224 (+)
LOC110488114 LOC106582161 coding downstream 96908 34432779 ~ 34464593 (+)
G134970 NA non-coding upstream 157523 34170099 ~ 34170427 (+)
G134964 NA non-coding upstream 171103 34156616 ~ 34156847 (+)
G134925 NA non-coding upstream 214327 34108647 ~ 34113623 (+)
G135261 NA non-coding downstream 30861 34366732 ~ 34367044 (+)
G135295 LOC106582155 non-coding downstream 72281 34408152 ~ 34408477 (+)
G135316 NA non-coding downstream 133018 34468889 ~ 34470198 (+)
G135341 LOC106582184 non-coding downstream 174609 34510480 ~ 34511713 (+)
G135380 thsd7a non-coding downstream 218702 34554573 ~ 34555365 (+)
G134735 LOC100136012 other upstream 365292 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 513467 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 830665 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1158572 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2440378 31834170 ~ 31887572 (+)
si:dkey-30e9.6 LOC106605205 other downstream 352084 34687955 ~ 34692286 (+)
G135916 NA other downstream 635769 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 636578 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 649101 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 815889 35151760 ~ 35153650 (+)

Expression


Co-expression Network