LOC110488056 (LOC106605265)


Basic Information

Item Value
gene id LOC110488056
gene name LOC106605265
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34350218 ~ 34366288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946627.1
GGTTGTGTAGAGACAGCGTAACCCATTCGTCAATAAATGGGAGCTAAGAACTCCAAAACAAACGTTGTTATGTAAAATAGCCTACTATTCTGTTGTATCGGGTTTTCACAAGCTATTTTGCTGTGCTCCCTGCGCGAGATGGACGCACATTTTTTTTGATAAATGCGTCGATGGAAATCTTCTCGCGCATACAGCTGTAGATATTTTTTTGCATCGACTCAAATTAATAAAATATAATTTTGGTCAAATACAAACTTTTAACAAAAATGTCCATCATACGCTTGACTGAGAGGGAAAACAGAATCCTACTCGGGTGTGCGAATTAAGGACAGTTgcattccattggttccattttTACATGTCATTAGATCCTGACGCGTCTTGATAAGGACTCGGCCTTACGCCTATgttattaaaaaaacatgtttgacTATATGGATTTTCTCGCAGTTGGTCCAGGAGAAACGCTGGACTTCTATACTGCAAGTCCTTGTATGCTCCAGGAACCATCTGTAACCGCATGCTTCACTGGACTAACAGAAACGGATTGGCAAATTCATCGGATCGCGCAATCTGTGGAAACGcagagctccagctcagaggACCTGTTCGCCAGTCCTCTCTCACCTCCGCCCCCTCCTCGCACCTACAAGCCCTGCTTCGTGTGCCAAGACAAGTCTTCAGGCTACCACTATGGCGTCAGTGCTTGTGAGGGCTGTAAGGGTTTCTTCCGTAGAAGTGTCCAGAAGAACATGGTTTACACGTGCCACCGGGACAGTAACTGCATCATCAATAAGATCACCAGGAACCGCTGTCAGTACTGCCGGCTACAGAGGTGCTTCGCCGCGGGCATGTCCAAGGAGTCTGTCAGGAATGACCGGAgcaagaagaaggagaagaatgaGACTCCCAAGATGACCATCATCGAGACATATGAGCTGACAGCGGAACTGGGCGGTGTAGTGGATAATATCTGTAGGGCTCATAGAGAGACATTCCCTTCCCTCTGCCAGTTGGGCAAATACACTACAaaCTCAAGCTCAGACACTAGGATCCAGTTGGACCTGGGGCTGTGGGATAAGTTCAGTGAGCTGGCCACCAAATGTATCATCAAGGTTGTGGAGTTTGCCAAACGGGTTCCTGGCTTCACTGGCCTGACTATAACTGACCAGATCACCCTCCTCAAAGCGGCCTGTCTGGACATTCTGATTCTGCGGATCTGTACGAGGTACACTCCTGACCAGGACACTATGACCTTCTCAGACGGGCTGACCTTGACCCGTACACAGATCCACAACGCTGGCTTTGGCCCGCTCACAGACCAGGTGTTCACCTTCGCCGGCCAGCTGCTGCCCTTGGAGATGGATGACACAGAAAGTGGCCTACTCAGCGCCATCTGCCTGGTGTCTGGAGACCGCCAGGACCTGGAGGAGCCGTCTAAGGTGGAGGTCCTGCAAGAGCCCTTACTGGAGGCCTTGAAGATCTACTCCCGTAAACGCCGGCCCAGCATGCCCCTTATGTTCCCCAAGGTCCTCATGAAGATAACCGACCTGCGCAGCATCAGCGCCAAAGGAGCTGAGCGCGTGGTGACGTTGAAGATGGAGATCCCAGGTTCCATGCCTCCTCTTATCCAGGAGATGCTGGAGGAGATGGAGAACCTGCAGAAGCAgtcagaggaggagcagagagcagACAAGAacatcacacccacacacacacacacaccatgtccacACAGTACATAGACACTGGCCTGTTTGCTTGAAAACCTTACGAGAAAGAAAATATATACCTCCAATTGGATGTCCCGGAAAGGAAATGATGAGGATGGTCAAACGTGAACAATACCAGTGAAAACAGTGTATTCAGAGTTGAATATATATAAAGGGAATTGTAAATACAATCATGCTGCAGTACTTAGTTGTGATGTAcatacagagagaaaaagagaatacTCATAACTGGATGTGACTGGAGATATAACAGGACTAACCTGTGTGTTGGTCAGTATCATAAGGTGTCTAGAAGATGGTttgaatacatacagtgcattgcaGTACTAGAGAGTAGCTTAACGTATTAACCTCACACAGAGCCTTTCTATACGGACGGGAGTGGGATTCGCGTGAATTGTGACTAGACATTCCATTGTGGTGCGACACAGGGGCAAGGGCATGACAATGCATTTTCAGAGGTCAttactaggtgtgtgtgtgtgggtcacaAATGTACGAGAGATTTTAAAACAGGTTTCCTATTCTAAAGTAAGGGGCTTCACGTTTCCATTATTTCAAGTCTTGCATGATTGGCTAAGTGCTATTACTCTCACCATGGTAACATGTATTCTACATACCATTGTATGGTTATGTTTATCTCTATGGTGAACGACATGGTGCTTTTTTTGTGATATTGATTATGATCATATTTCAGAtagttattggtctattaaagtCTTGAAACTATA

Function

NR:

description
retinoic acid receptor beta-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946627.1 True 2464 mRNA 0.47 8 34350218 34366288

Neighbor

gene id symbol gene type direction distance location
nr1d2a LOC106582110 coding upstream 14347 34327950 ~ 34335871 (+)
LOC110488035 LOC106582094 coding upstream 25626 34317608 ~ 34324592 (+)
ube2e2 LOC106582102 coding upstream 32744 34279641 ~ 34317474 (+)
LOC110488005 rab5a coding upstream 164254 34177043 ~ 34185964 (+)
LOC118939520 NA coding upstream 180968 34164350 ~ 34169250 (+)
LOC110488078 LOC106605262 coding downstream 18218 34384506 ~ 34396588 (+)
LOC110534788 NA coding downstream 32026 34398314 ~ 34405885 (+)
LOC110488092 LOC106605261 coding downstream 57102 34423390 ~ 34432224 (+)
LOC110488114 LOC106582161 coding downstream 66491 34432779 ~ 34464593 (+)
LOC110488146 tmem106b coding downstream 260073 34626361 ~ 34634974 (+)
G135023 NA non-coding upstream 21582 34276292 ~ 34328636 (+)
G134970 NA non-coding upstream 179791 34170099 ~ 34170427 (+)
G134964 NA non-coding upstream 193371 34156616 ~ 34156847 (+)
G135261 NA non-coding downstream 444 34366732 ~ 34367044 (+)
G135295 LOC106582155 non-coding downstream 41864 34408152 ~ 34408477 (+)
G135316 NA non-coding downstream 102601 34468889 ~ 34470198 (+)
G135341 LOC106582184 non-coding downstream 144192 34510480 ~ 34511713 (+)
G135380 thsd7a non-coding downstream 188285 34554573 ~ 34555365 (+)
G134735 LOC100136012 other upstream 387560 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 535735 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 852933 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1180840 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2462646 31834170 ~ 31887572 (+)
si:dkey-30e9.6 LOC106605205 other downstream 321667 34687955 ~ 34692286 (+)
G135916 NA other downstream 605352 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 606161 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 618684 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 785472 35151760 ~ 35153650 (+)

Expression


Co-expression Network