LOC110488078 (LOC106605262)


Basic Information

Item Value
gene id LOC110488078
gene name LOC106605262
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34384506 ~ 34396588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560069.2
TCATAATCGCAGTACGCATTGTATCTGGCGTACTCTCCGTTGTTCAGGTGTGACATTACGTCGGCCACAGTACGTAGGTATGCGCTAGTGAGAAGGGGAATGTCGGGTTGTGAATGATCGGTTTCTGAGCGGCAGCAAAACGTCAACATTATGGCTCAACAAAAGAATCTGGAGGGGTATGTGGGCTTTGCTAGCCTTCCCAACCAAGTGTACAGAAAGTCGGTGAAGAGAGGCTTTGAATTCACCCTGATGGTTGTTGGTGAATCAGGATTGGGCAAGTCCACGTTGATCAACTCTCTGTTCCTAACAGACTTGTACTCTTCAGAATACCCTGGGCCTTCACACAGAGTCAAAAAGACTGTACAGGTGGAGCAATCCAAAGTGTTAGTAAAGGAAGGTGGTGTCCAGCTCCTGCTCACAATAGTCGACACCCCAGGATTCGGCGACGCTGTGGACAATAGCAACTGCTGGCAGCCGGTCATCGACCACATAGACAGCAAGTTTGAGGATTACCTCAACTGTGAGTCGCGGGTGAACAGACGACTGATGCCTGACAGCAGAGTGCAGTGCTGCCTCTACTTCATCGCCCCCTCGGGACACGGACTGAAGCCTCTGGATATTGAGTTTATGAAACGGTTGCATGAGAAGGTGAACGTCATCCCACTGATCGCAAAAGCAGACACTCTCACCCCAGAGGAGTGCCAACGGTTCAAGAAGCAGATCATGCGGGAAATCCTGGAACACAAAATCAAGATCTACGAGTTCCCAGAGACAGATGATGAGGAAGAGAACAAACTGGTGAAGAAGATCAAGGACCGTCTGCCCCTGGCCGTGGTGGGCAGTAACACCATCATCGAGGTGAACGGGAAGAGGACCAGAGGACGACAGTACCCATGGGGAGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATCCTACGAGACATGCTCATCAGAACCCACATGCAGGACCTGAAGGACGTGACCAATAACGTCCACTATGAGAACTACCGTAGCAGGAAGCTGGCAGCCGTCACCTACAACGGACAGGACAACAACCGGGTCAAGGGTCAACAGTCGACAAAACATGACACAGGTGAAGGCATGAGCCCCCTGGCTCAGATGGAGGAGGAGCGGCGGGAGCACGTGGCCAAGATGAAGAAGATGGAGATGGAAATGGAACAGGTGTTTGAGATGAAGGTCAAGGAGAAGATCCAGAAGCTGAAAGATTCCGAGGCTGAGCTGTCGAGGCGTCATGAGCAGATGAAGAAGAATCTGGAGGCCCAGCACAaggagctggaggagaagagACGCCAGTTTGAGGATGACCGGGCCAACTGGGAGGCCAATCAGCGCCTGGAGCAACAGAGACTGGATGCCTCCAGGACTCTGGAAAAGAACAAAAAGAAGGGGAAGATATTTTAGACAGTCTGCAGAAACACCAAGTTGTACTTGTTGCCAGCTTGGATATCTATGTGTGGCACCAAAGCTCTTGTACAGCCCAGCTGGGTCTGCATGTACTGTCACAATGACCGGAAGAGAGCTGCCTGTGGACTTCTCCAAGGAATGTGTTTACCTTAACCAAACGTACCGTCTTAGACAGGCCAAACCCATATATAACTGAATACTGCCCAAGGTTGCAATGTCTATTTAACAACTGATTACTACAGTTTTATGCAGAGCAACAATCATGTTTCAGTGGTTTAATTTGTTTACATGCACAAAAGCTCTTCCATGATGTGGAAAAGGAAATGGCATTTccaaaaactgtttttgtttagtaAAGTGTAACAGATAAACCTCATACTGAACAGCTCCCCATGCAATGTAGCCTAACAGGAAACGACAGTCTCGGTCTCTCAATAGGAGGAATGGGAAATCTAAAAGAGGCTAAAATGCACCttgggctttttttttttttatggctgAAGCTTTTTCCAAAATGTAACGCTTTCTTCTGTTTTTAGCAAATTTCACTAGCCTTGGACCACCATTAACTtcataaatgttatatttcagtttatttttatatatatacaccgAGCCAGCTAaagtcctttttttttttttttttttttgtatgtaaGAATTCGTCTGAAGCTTTGACCCGTTTCTGAGGAGGATTGACTGTTTAAAATACATTCAGTAGTCCTACAAAGAGCagaaaaaataaatgaaaggAATATTTCTGTGACTCCACATGTCATCAGATTAAGTGGGAAAGGAAAGTCAACACCATATTTTGCTTTGCCTATGTACTCCATCTGTATTTGTTATTTGTATTGTACAAAGTCACTTAATAAACATGTGATAGACTTGCAATGCAA
>XM_021560080.2
TCATAATCGCAGTACGCATTGTATCTGGCGTACTCTCCGTTGTTCAGGTGTGACATTACGTCGGCCACAGTACGTAGGTATGCGCTAGTGAGAAGGGGAATGTCGGGTTGTGAATGATCGGTTTCTGAGCGGCAGCAAAACGTCAACATTATGGCTCAACAAAAGAATCTGGAGGGGTATGTGGGCTTTGCTAGCCTTCCCAACCAAGTGTACAGAAAGTCGGTGAAGAGAGGCTTTGAATTCACCCTGATGGTTGTTGGTGAATCAGGATTGGGCAAGTCCACGTTGATCAACTCTCTGTTCCTAACAGACTTGTACTCTTCAGAATACCCTGGGCCTTCACACAGAGTCAAAAAGACTGTACAGGTGGAGCAATCCAAAGTGTTAGTAAAGGAAGGTGGTGTCCAGCTCCTGCTCACAATAGTCGACACCCCAGGATTCGGCGACGCTGTGGACAATAGCAACTGCTGGCAGCCGGTCATCGACCACATAGACAGCAAGTTTGAGGATTACCTCAACTGTGAGTCGCGGGTGAACAGACGACTGATGCCTGACAGCAGAGTGCAGTGCTGCCTCTACTTCATCGCCCCCTCGGGACACGGACTGAAGCCTCTGGATATTGAGTTTATGAAACGGTTGCATGAGAAGGTGAACGTCATCCCACTGATCGCAAAAGCAGACACTCTCACCCCAGAGGAGTGCCAACGGTTCAAGAAGCAGATCATGCGGGAAATCCTGGAACACAAAATCAAGATCTACGAGTTCCCAGAGACAGATGATGAGGAAGAGAACAAACTGGTGAAGAAGATCAAGGACCGTCTGCCCCTGGCCGTGGTGGGCAGTAACACCATCATCGAGGTGAACGGGAAGAGGACCAGAGGACGACAGTACCCATGGGGAGTGGCAGAAGTTGAGAACGGAGACCACTGTGATTTCACCATCCTACGAGACATGCTCATCAGAACCCACATGCAGGACCTGAAGGACGTGACCAATAACGTCCACTATGAGAACTACCGTAGCAGGAAGCTGGCAGCCGTCACCTACAACGGACAGGACAACAACCGGGTCAAGGGTCAACAGTCGACAAAGAGCCCCCTGGCTCAGATGGAGGAGGAGCGGCGGGAGCACGTGGCCAAGATGAAGAAGATGGAGATGGAAATGGAACAGGTGTTTGAGATGAAGGTCAAGGAGAAGATCCAGAAGCTGAAAGATTCCGAGGCTGAGCTGTCGAGGCGTCATGAGCAGATGAAGAAGAATCTGGAGGCCCAGCACAaggagctggaggagaagagACGCCAGTTTGAGGATGACCGGGCCAACTGGGAGGCCAATCAGCGCCTGGAGCAACAGAGACTGGATGCCTCCAGGACTCTGGAAAAGAACAAAAAGAAGGGGAAGATATTTTAGACAGTCTGCAGAAACACCAAGTTGTACTTGTTGCCAGCTTGGATATCTATGTGTGGCACCAAAGCTCTTGTACAGCCCAGCTGGGTCTGCATGTACTGTCACAATGACCGGAAGAGAGCTGCCTGTGGACTTCTCCAAGGAATGTGTTTACCTTAACCAAACGTACCGTCTTAGACAGGCCAAACCCATATATAACTGAATACTGCCCAAGGTTGCAATGTCTATTTAACAACTGATTACTACAGTTTTATGCAGAGCAACAATCATGTTTCAGTGGTTTAATTTGTTTACATGCACAAAAGCTCTTCCATGATGTGGAAAAGGAAATGGCATTTccaaaaactgtttttgtttagtaAAGTGTAACAGATAAACCTCATACTGAACAGCTCCCCATGCAATGTAGCCTAACAGGAAACGACAGTCTCGGTCTCTCAATAGGAGGAATGGGAAATCTAAAAGAGGCTAAAATGCACCttgggctttttttttttttatggctgAAGCTTTTTCCAAAATGTAACGCTTTCTTCTGTTTTTAGCAAATTTCACTAGCCTTGGACCACCATTAACTtcataaatgttatatttcagtttatttttatatatatacaccgAGCCAGCTAaagtcctttttttttttttttttttttgtatgtaaGAATTCGTCTGAAGCTTTGACCCGTTTCTGAGGAGGATTGACTGTTTAAAATACATTCAGTAGTCCTACAAAGAGCagaaaaaataaatgaaaggAATATTTCTGTGACTCCACATGTCATCAGATTAAGTGGGAAAGGAAAGTCAACACCATATTTTGCTTTGCCTATGTACTCCATCTGTATTTGTTATTTGTATTGTACAAAGTCACTTAATAAACATGTGATAGACTTGCAATGCAA

Function

NR:

description
septin-7 isoform X2

GO: NA

KEGG:

id description
K16944 SEPT7, CDC3; septin 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560069.2 False 2333 mRNA 0.46 15 34384506 34396588
XM_021560080.2 True 2312 mRNA 0.46 14 34384506 34396588

Neighbor

gene id symbol gene type direction distance location
LOC110488056 LOC106605265 coding upstream 18218 34350218 ~ 34366288 (+)
nr1d2a LOC106582110 coding upstream 48635 34327950 ~ 34335871 (+)
LOC110488035 LOC106582094 coding upstream 59914 34317608 ~ 34324592 (+)
ube2e2 LOC106582102 coding upstream 67032 34279641 ~ 34317474 (+)
LOC110488005 rab5a coding upstream 198542 34177043 ~ 34185964 (+)
LOC110534788 NA coding downstream 1726 34398314 ~ 34405885 (+)
LOC110488092 LOC106605261 coding downstream 26802 34423390 ~ 34432224 (+)
LOC110488114 LOC106582161 coding downstream 36191 34432779 ~ 34464593 (+)
LOC110488146 tmem106b coding downstream 229773 34626361 ~ 34634974 (+)
vwde LOC106605201 coding downstream 247847 34644435 ~ 34646777 (+)
G135261 NA non-coding upstream 17462 34366732 ~ 34367044 (+)
G135023 NA non-coding upstream 55870 34276292 ~ 34328636 (+)
G134970 NA non-coding upstream 214079 34170099 ~ 34170427 (+)
LOC118939520 NA non-coding upstream 219310 34164350 ~ 34169250 (+)
G135295 LOC106582155 non-coding downstream 11564 34408152 ~ 34408477 (+)
G135316 NA non-coding downstream 72301 34468889 ~ 34470198 (+)
G135341 LOC106582184 non-coding downstream 113892 34510480 ~ 34511713 (+)
G135380 thsd7a non-coding downstream 157985 34554573 ~ 34555365 (+)
G135671 NA non-coding downstream 341694 34738282 ~ 34738494 (+)
G134735 LOC100136012 other upstream 421848 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 570023 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 887221 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1215128 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2496934 31834170 ~ 31887572 (+)
si:dkey-30e9.6 LOC106605205 other downstream 291367 34687955 ~ 34692286 (+)
G135916 NA other downstream 575052 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 575861 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 588384 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 755172 35151760 ~ 35153650 (+)

Expression


Co-expression Network