LOC110534788


Basic Information

Item Value
gene id LOC110534788
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34398314 ~ 34405885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110534788
ATGTCATATTATGAATCAAACATTGTCGACATACCGCCACCGTTGTGGGTGGAACATGGGGCTTGGTTATTATCAACTTTGGTGCTGTGCTGCTTAATAGTAACGTTCGACCTACATGTAATTCAAAAAGTGTAAACAGCGAAAATTAGAGAGATGAAGTCAACTCATAATTTAGACTACGACGAGCGTGCATTCTCAACATCTACATTTGCGCACAGCACCGTCAACTTCAGATCCAAAATAACTCCTCAACAAGTCACGGTATTGGAGCCAGGTAACACAGCTCCAGCTTTCTATGGTAACCCTGGATGGAGAATTCGTTTACCTGCCACATGCAGGGTTGAACTGGCCATTGGTAATTCCCGCTTTTACCAACAAGTCTGCCTTTTTGGTGTGCCTGTGGAACTCCGAGTCGTCATTAACCGACTTGGTCCAGGACCTACCCGATAGCACCCAACTGTTGTTTGTTAATATAGAGGAGACAGGCCATTAAACAGAACTGACATATTACAAGTTTCCCCTTGTGTTTCTGTTCAACAGAAATACATAAGTTTTGTCCAGATTGCACTTCTCCCCTGTTCCTGTATTTGGCTATGGGAACTGGATTCCCAGTGTGCTGTACTCCTGGGGCCGTTCGGGACACAACTATGGCCTTTCTCATGCAGTTTGTACCTCTACAAGGTGGAATATGCCAGTGATAGTCAAGAGACTTGATGTGCGATATGATTGGCTGATGGGTTCCTGGAGCTAGATGAAACACCGGTTGATTGATGCAGGCGACGGGTGTGAGCCGGCCCCCTCCGCTGCAGGTTTCGTTGCCTGGGTTCCTTTTTCACCAAGGTCAGTTatgagacggagagagggataggTGGAGAGCCAACATGGTCAAGTCCTTGTCCATGCACGTCCTGGTAACCCGATCCAGGATATGAACTGTGTGGGAGACAAATATTCTACGCCACTAGGCATACCTGCTGCCATAGTGCACCGGGAGCCCTCGGTAGCCCAGGCCCTTAGatATGGACACATGGTGACCGTGTCCTTTCAGAGTACCCCCTCTCCAAACTTCTTCATTGGCATTGACCAGCAGGGGGCACTGTCTGAGATGGGCTGGttcctctacccctccttcaAGTTCATCAACTGGCAGGCCCAGTGGTTTAATTTCTGTGAGGCGCTTCAGACTAGACTCCGTGACCCAGCCTGGGTGGTCCCTGTGTTTGAGGAGATTCCGATGCAAGGACAGAGTGGAGCAGTAGCCAcaatcagtgtagACATGTTGGATTTTGACATGTTGGAGTTGGACGCGTTTCTGTTCTGTCCCAGCCAGAGGAATGACTCCCACTGGGATCACACTGTGCAGCTGTTTGTGTGCTGTAACGATTTCAGTCCCCATTGCAACATGGAGATGGGGCGCTGTATAACAGCCTTCCCGCAGGTTTCCGATTTTGCTCTTGTTGTAGCCAATCACTCATCCAAGCTTTACCCCTTGAAGCTGATGTCATTGTACAGTGGAGGCACCTTTGACAAGGAATACAACAGGAGACACCAACCAATCAAATTCACTGCCCCAGCCTCAACAAAAAAGGTGGAATTGTATGCTGTAATCCCAGGTCACGGGAGAGACAGGAACAGCTGCGGCAAGTTCTGTGTGACTGCACACCACTTCCTCGTCAAGGGAGCATTCAATCACACTCGTATTTTTGACTCGGCAGGTTCAGCCCTGGGGTGTGCCATGTGGGTGGGCCTCTCCGCCCCCTCTGGGCGGTGCCCAACAAGCATGGCACCTGGCTGTACGGTCCGTGGGGGCTGGTGTGGTGGGCTACAGGTCAACCCCTGGAGGATTGACATCACCACACAGCTGGACATGAGTGGGATTAAAGCTCAGAGAGTGTGAAGCTCATTTTGCTCTTCAGAAAAGTTGAAGGCGGCTACTTAACCTGGTCAATTATTTGTAACTGCACAGACGTAGCTTTTAGCGTCAAACTTAAACTTTCAGGTGATGACAAGACACTTTTCCCCGACGCAAGA

Function

NR:

description
Peptide-N4-N-acetyl-beta-D-glucosaminylasparagine amidase F precursor

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110534788 True 2031 mRNA 0.50 13 34398314 34405885

Neighbor

gene id symbol gene type direction distance location
LOC110488078 LOC106605262 coding upstream 1726 34384506 ~ 34396588 (+)
LOC110488056 LOC106605265 coding upstream 32026 34350218 ~ 34366288 (+)
nr1d2a LOC106582110 coding upstream 62443 34327950 ~ 34335871 (+)
LOC110488035 LOC106582094 coding upstream 73722 34317608 ~ 34324592 (+)
ube2e2 LOC106582102 coding upstream 80840 34279641 ~ 34317474 (+)
LOC110488092 LOC106605261 coding downstream 17505 34423390 ~ 34432224 (+)
LOC110488114 LOC106582161 coding downstream 26894 34432779 ~ 34464593 (+)
LOC110488146 tmem106b coding downstream 220476 34626361 ~ 34634974 (+)
vwde LOC106605201 coding downstream 238550 34644435 ~ 34646777 (+)
si:dkey-30e9.6 LOC106605205 coding downstream 282224 34687955 ~ 34692286 (+)
G135261 NA non-coding upstream 31270 34366732 ~ 34367044 (+)
G135023 NA non-coding upstream 69678 34276292 ~ 34328636 (+)
G134970 NA non-coding upstream 227887 34170099 ~ 34170427 (+)
LOC118939520 NA non-coding upstream 233118 34164350 ~ 34169250 (+)
G135295 LOC106582155 non-coding downstream 2267 34408152 ~ 34408477 (+)
G135316 NA non-coding downstream 63004 34468889 ~ 34470198 (+)
G135341 LOC106582184 non-coding downstream 104595 34510480 ~ 34511713 (+)
G135380 thsd7a non-coding downstream 148688 34554573 ~ 34555365 (+)
G135671 NA non-coding downstream 332397 34738282 ~ 34738494 (+)
G134735 LOC100136012 other upstream 435656 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 583831 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 901029 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1228936 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2510742 31834170 ~ 31887572 (+)
G135916 NA other downstream 565755 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 566564 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 579087 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 745875 35151760 ~ 35153650 (+)

Expression


Co-expression Network