LOC110488086 (LOC105021885)


Basic Information

Item Value
gene id LOC110488086
gene name LOC105021885
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34406067 ~ 34422793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560093.2
TGCAGAAATGTTACAAACAGTTCTAAATTGCAAATATCGGAATTCAACGTAGACTGTGGGGAAAGTGAAATGTTAAAAGAAACCACAACGTGTTTTAACTTTTTATCCTCAGCTTTTTACACCTCTATAGTTGTTAATTAAGCGTAATACGTTATAAAGAGTTCAGTCTTGTGTACACTGCCCAGAGCTACAGTATTACGCGCAATactaaatcaaattgtattggtcacatacacgtccTATGGGTGACTACAATTTATTCCGTGTCTGTGAGTCTGTAAAACTGTGAAATGTCATAAAGATACATGAAGATAATACATAGTGACGTGTAGCGCACAATAATCTACACATTCTTGCAGACGAACCGAGCGCTGTCCTTCCCGAAGCGACATCGCACTTCACGTAGTGGACTAGTCCGAACTGGTGATCAGGACGAGATGCTGCTTCCTAAACCACTCCAGATGATTATACCAAAACCGGCGGCTGTATTTAAATAAGAACTAAGGTTGTGAATGTTGAGAAAGGACAACATGGGGAAAGGAGTGGCTCTGTTCCTTCTACTGTTGGCACTTCTTCACGAGGCTATAGGCcagagaagaagaaaaggaaAGTACAGTGTCCTCAGAGATGGAGAAAATGACATGACAACATGCTCCATGGAGGTGGCCTTCATTCTGGACAGTTCGGAGGGCGCCAAGACCTTCCTGTTCGAGAAGCAGAAGTCCTTCGTTCTGCAATTCAGCACTCGTCTCACCATGCTCCAGTTGTCTGGATGGACCCTAAAGCTGCGGATGGCTGCTCTCCAGTACAGCAGCTCTGTGTCTGTAGAGCACAGCTTCACTGCCTGGCAGGACCTGGATGTGTTCCACAGCAGAGTCAGCTCCATGGTCTACATTGGCCATGGCACCTACTCCACCTACGCCATCACCAACGCCACACAGCTCTTCACCCAGGAGACCAAGGAGGACAGCGTCAGGGTGGCGGTGCTCATGACCGACGGTGCCGATCATCCGAGGAACCCTGATGTGATCGGAGCAGCGGCGGATGCTAAGGGTAGTGGCGTGAAGCTCATTGCTATAGGGTTGTCGGACCTGGCCCGCCAGAGCCAGAACAGTGCCAAACTCCGGGCTATCGCCAGCACACCGGCCAAGCAATTCGTCCACAGTCTCACTGACCCCCAGCTAGAGGAGAAGTTACTGAAAGAGTTGGGTGCAATAGCGCTTGAGGCGTGTCCACAGGctgaagtgtgtttgtgtgaaagaggggagagaggcccTCCTGGAAACCCAGGTACAAAAGGAGATCCAGGATATGAAGGACCATCTGGTCCAAAAGGATCAAGGGGAGAACCTGGAGTCGGTGGCCGACCAGGAAGTGACGGTCTTGAGGGCAGTCCTGGTTATAAAGGTGACAAGGGGGAGATAGGAGACTGTGGCACCCCTGGGGGGAAAGGAGATGAAGGCCCTGGAGGACCTCCTGGCCCACGGGGACCTAGAGGAGACCAGGGTGTTAATGGACCACCCGGGGACCAGGGTCCGGAGGGCCAAACAGGACCTAAAGGGGACCAAGGAACCACCGGTGCATCTGGACCAGCAGGTGACATTGGCATTGGGTTCCCAGGTCCAAAGGGGGCCAAAGGAATTCAGGGAAGACCAGGAACCCTTGGTCCCATTGGAATTGGAGAGCCAGGACAGCCAGGACCCCCAGGACTTGCTGGAgcacagggtaaccagggagctGTTGGGGAGGGGCTCCCTGGCTCAAAGGGGGATCGAGGCCATGATGGCCCCAGAGGTGAGCGTGGTCTCACTGGTGTTGGGATCAAAGGTGATAAGGGAAATCCTGGACAGCTTGGATCACAAGGACCGGTGGGAATGCCAGGGGCAGGAATTCAAGGAGAAAAGGGGAACCAAGGGCCAGTTGGCCCTCCAGGCCCCAGAGGGAATCCAGGTGTGGGACTTATGGGCCAAAAGGGAAGCCAAGGCTTCTCAGGTGAGCCTGGAATCCCAGGGGAGAGCGGTGTTGGGGAGCCAGGACCTAAAGGAGACCCAGGATCGGAGGGGTTGCCTGGTATTCCGGGCCTCTCTGGAGAGGATGGAGACATAGGACAGAAGGGTGACATTGGGTTACATGGGCCCAGGGGACCTGATGGGGCACCCGGAAAAGGTGTCCCTGGAGAAAAGGGGGCCCGAGGCGAGCGGGGCTCCAGGGGCCAGCTAGGGGCAGTAGGGCCTGTGGGGCCAATGGGGGCCAAGGGTGAAGCCGGAAGTGCTGGACGAGCAGGTACAAACGGACCACCTGGGCGGGGGTTACCCGGTATCAAGGGGGACCCTGGTGCGGTCGGCCCACCCGGACATGTTGGTGAACCAGGAATAGGAATCACAGGACCGAAGGGTGAGAGAGGGCTACCAGGGCCCATTGGTCCACCTGGGCTTGAAGGGGAAGGCCTTCCTGGAACTCCAGGAGCCCCTGGAGTACCAGGACTGACAGGTGAGACTGGACCAGAAGGAAAAGGTTTACCTGGTCCTAAGGGAGACCGGGGAACTCCAGGCCCCACAGGACTAGCTGGAGCACCAGGAGTTGGGCTAATGGGCCCCAAGGGGTCAGCTGGTCAGATTGGAGCACCGGGTCCCCAGGGACTGCCTGGAGAGGGCATTCAAGGACCAAAGGGGGAGTCAGGATTCCAGGGGATCCCGGGCCCCAGGGGGCCCCCAGGACAAGGTATTCAAGGGGATAAGggagacagggggtTCGTGGGTGAACGAGGCAGAaagggggacaggggagagactggagagacaggAACGGCTGGACCTTTGGGCAGACTGGGAGAAAAAGGGGAACCTGGCCTAACAagagaggaggtcatCAAACTGGTCAGATCTATATGTGGTTGTGGGGTGAAGTGCCGTGAGAGCCCACTGGAGTTGGTCTTTGTGATTGACAGCTCAGAGAGTGTGGGCCCTGACAACTTCAACGTGGTGAAGGACTTTGTGAACGCTCTGGTCGACCGTGCCTCCGTGAGCCGGGAGACCACTCGCGTCGGGGTGGTCCTCTACAGCCACATCGACATGGTGGTGGTCAGTCTGCACCAGCAAGCCAGCCGGGACCAGGTGAAGAAGGCGGTCCGCACTATGACCTACCTGGGCGAAGGCACTTTCACGGGCAGCGCCATCCATCAGGCCAACCAGGTGTTCCGGGCGGCCAGGCCCGGGGTGAGGAAAGTGGCCATAGTGATCACAGATGGACAGGCGGACGAGAGGGACTCTGTGAGGCTGGAGGAGGCAGTGAAAGAGGCCAATGGCAGTAACATTGAGACGTTTGTCATCGGGGTGGTGAACCAGAGTGATCCGCTGTACGAGGAGTTTAAGAAAGAGCTCCACCTCATGGCCTCTGACCCAGACAGGGAACACGTCTACCTGATTGATGACTTCAGGACACTTCCTGCCCTTGAGAGCAAGCTGCTGAGTCGGATCTGTGAGAGTGATGGCGGGGCCCAATTCAGCTCCATCCCTAGCTCCAGATACTCCCCCGGAACCCCTGGACAAGCCGGGATTGTCAGGGAAACCCCAGAGAGGACTGATACTGACACGCCCACTTTCAATGGAGACTTTAAAAAAACACATATGGTGCCAGGTCCACCAGGAGAGTCAGACAGAGTCTTTACCCCACAGGGCTCCCAGACCGGGGACCGAGATAACTCAGAGACCTACAGGGTCCCATCCTTTGACAGGGAACCCTTCAAGCGCCTACCAGAGTTCCTTCTTCCGTCAGAGATGAAGAACCCCTCCCACAGTGTGGTCATGACGGGCTCCCAGGCCCCCACCCAGAGGCCCCTTCCCGTAGTAAAGTTACCCGGGCTCCCCCCAACCTCTCCACCTCTGCCCCAGGATGATTTAATACCGGATGAGAGATGTGGACAGACTCTGGACCCCGGGCCTTGCAGGAATTACTTTGTGAAGTGGTACTATGACACTACGGCTAATGCCTGTGCCCAGTTCTGGTTCGGAGGCTGTCAGGGAAACCAAAACCGATTTGAGTCGGAGAAGAGCTGCAAAAAAACCTGTGTTAAGGTCTAACATACACACAGTTGTTGACTTGTTTTGAATGCTCACAAATCTACTTGACTGTATTGATAAGACATGATACATTTGGGTCAAAGGTGGGTCAATTTCAATATCAGTGCCTTACCTCTTCACCAATACTTTGACATGGGGATAGAAATGGATAGAACACTTGTCAAAGAGAGTACTAGGTGATGTTGGGACCAAATGTTCGATCACAGTTATTTTGGATTCGTATTCCCTCGTCTTGGAACTGTTGGTGGTAACATGGCACCAATTCAATTTAACTTGAATTAAATTGAAATTATCCCCTCAGGGGCAATAAGCTATTTATATAACTCTGTATATGTGTGTCTTTGTTTTAACATAAGCTCCCTCATTTCTTGGAGGTAACTAACTGTAAGTTGAATGAGACTTAGGGCTTTTGGAAGAAGTATACAGTCAGGGAAGCATTCCATTTATTCATGTTCAAGATGGAGTAATAAGGGCAGAACCGTATTGGTTTCCAAAAACACCGTTGAACACTAAATGGTAATGTTACAAATGTGGCAGAAGTTCATAACACTAACCTTTATCTCGGATTAACGTTCCTATAAGTAACTAATTTGTATGAAAACTGACTGCTGGATATTATTGTTTATTACACTGCACAATTTCATTAAAGTTAATTAAATGAA

Function

NR:

description
collagen alpha-1(XXVIII) chain-like

GO: NA

KEGG:

id description
K23619 COL28A; collagen type XXVIII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560093.2 True 4741 mRNA 0.53 36 34406067 34422793

Neighbor

gene id symbol gene type direction distance location
nek10 nek10 coding downstream 22041 34370816 ~ 34384026 (-)
LOC110488012 LOC106605268 coding downstream 171218 34193659 ~ 34234849 (-)
LOC110534780 pp2d1 coding downstream 218056 34186054 ~ 34188011 (-)
LOC110534769 efhb coding downstream 234349 34170745 ~ 34171718 (-)
LOC110487942 LOC106582030 coding downstream 271833 34074555 ~ 34134234 (-)
LOC110488127 ica69 coding upstream 42273 34465066 ~ 34475371 (-)
LOC110488138 LOC106605258 coding upstream 61272 34484065 ~ 34493285 (-)
LOC110534798 LOC106582184 coding upstream 70729 34493522 ~ 34600391 (-)
LOC110534811 LOC106582196 coding upstream 224162 34646955 ~ 34677655 (-)
etv1 etv1 coding upstream 317702 34740495 ~ 34759145 (-)
G135409 LOC106605262 non-coding downstream 12660 34384555 ~ 34393407 (-)
G135265 NA non-coding downstream 37992 34367497 ~ 34368075 (-)
G135262 NA non-coding downstream 38892 34366884 ~ 34367175 (-)
G135255 NA non-coding downstream 44475 34361266 ~ 34361592 (-)
G135210 NA non-coding downstream 88601 34316731 ~ 34317466 (-)
G135438 NA non-coding upstream 20286 34443079 ~ 34473477 (-)
G135441 NA non-coding upstream 27834 34450627 ~ 34453091 (-)
G135406 NA non-coding upstream 41529 34464322 ~ 34464588 (-)
G135522 NA non-coding upstream 178090 34600883 ~ 34601451 (-)
G135668 NA non-coding upstream 312828 34735621 ~ 34736034 (-)
G134668 NA other downstream 540130 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1180965 33208500 ~ 33225125 (-)
G134102 NA other downstream 1617946 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 1654489 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 2757272 31631886 ~ 31648795 (-)
G135575 NA other upstream 181422 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 883574 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 1251505 35674291 ~ 35700846 (-)
G137479 NA other upstream 1947211 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 2211400 36634193 ~ 36639005 (-)

Expression


Co-expression Network