LOC110488114 (LOC106582161)


Basic Information

Item Value
gene id LOC110488114
gene name LOC106582161
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34432779 ~ 34464593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560143.2
CAGGTTTATCAGCCAGTAGTCTTGCGGATACAACTGTCATTTACAGTGGACATGGGGACGGTAGGGAAGCGCCAAAGATTAGGGAATATGTTTAGCTAACTGTATAAATTAAGTTTGTAAAACAACATATATTTAAAGTTATCGACAAAACATGCACAAAGAAGACTTGTTTTAGTGTTCTTCAGAAGCGGATATCTTGGCGATTTTTTTCCTGAAAGTGATACGAAGCAGCAGAATGTCAGTTCCCACCAACTCGCTTCAACAACAGTCCACAGTCAGACGTAGCAATGCAGGGTCCCCCAGTTTATCCAACAGCTGCCGTTTGCACCCCATCCGTGCTACCGTGCCCTACCAGCTCCTACGCGGGGGCCAGAGCAGCCCGAcacgctctctgcctctctctgttggAGGCAACAATGGACCGACAAATAGCCGCGGGTCATCTCCCCCAAGTGCGACACTGAATCTTGGAGTAAATTGCACTGGCGCCACGAGACAGAGACTGTCTCCTGAAAATAGGGTCTCGCACTCACCTGACCGGAGTCCAAACTCACCCGTTTGTAGAGGAGAGAGGTCCAAACTGCAGGTGCGTAGCTCCAGTGCTATCCGGCGGACATCTTCCCTGGACGCCATTATGGGGCCGTACCTCGCAGGCCAGTGGCCTCGTGACTCCCACGGACCCTACCCTTCCTGCATGAAAGACAAAGCCACACAGacATCTGGTCTGTGGATAGAGGAGGCTGGAGGGGAGCAGGGAAGCCCACACCAGCGGTCAGCTTCCTGGGGTAGTGCAGACCATCTGAAAGAGCAGATTGCTAAACTCAGGCTGCAGCTCCAGCGCAGTAAACAGGTCAGCCGCCAGAGCAAAGACCGAGATCAACAGCTGGGACTACACACCAGCACCACATACCATCCCCAGAATAAGGTGGTTTCCACAGCGCTGTCGAACATCCCAGTGCCAAAGTCCCTCATATCGAGAGTGCCTAGCAGTGTGGAGGGCATCAACCACGAGCTGGAGAATGTGTTCATCAGAGAGGACTGGAAGCAGGGAATacagGCTTTGGACGTGTTGGATGGCCGCCGCGCCCCCTTTCAGCCTCATCGCTACGGCAATGGCGGTGACACACGTGACACGGACACCCAGGCCCCCTCTAGTGGCGGTTCCAGCCCCTGGGCCTGCCCCTTCACTCCTGACCCCCTCCACTCCCCAGAAGGCAGCCCCTGCTCTGCAGAAGAGCTTGACAAAGACAGCGGCTGCGGCTCTCCCCTTCCCAAGTTTGCCACCTCTCCCAAACCCAACAACAGCTACATGTTCAAACGGGAGCCTCCGGAGGGGTGTGAGAGGGTCAAAGTGTTTGAAGAGATGGTGTCTGGTGTCTCCAGAGGCTTCCCTCTTTTTTCATGCCCAGACAAAAACAAGGTGAACTTCATCCCCAGGGGCTCCGCCTTCTGTCCCGTCAAACTCCTCTGCTCCTCCCACTTCACCACAACCTCGCCCAGCCCTGGTCTCCATGCAAGAAGCAGCACATGGCCCGAGGACGCCATGACACCCGCTAGTTTCACTACTCTGGCCTCCACTAACTGGAGCTCGTCTAtaggcacagacatggtcagtAGCTCAGACACAGGCGTAGGCACCAACACAAGCACAGAGAACAGCACAGACAGTCTGAGCCCAGACACTAACACAGACACGGGTGAACTGACAAGCACAGCAGTGGTCCCAGGTGGCCTGTCTACAGATCCCTGCTCCACTACACACATCCTTCTTACCAGCTAGTTCTCAGGTACAGTCCAGCTTATGagcattagcctggtcccagatcagtttgagcTGTCTTGCTAACTCCTATGGTCGCAATGACCATAGTAGGTAGCAAAACAGCacaacagatctggaaccaggctagctGAGTATGGCTCTTTAACGCAACATTAGCCAGCAAGGAGGGCCTATCCTTACTAACCTAGCCTTCTCTTCTGAAAGGTGTGGCAGGCAAAATCCTCCAGAAAGACTTGTTTTCTTTTCAGAGGGTAGATTCGATTGTTTCATATATTGTGTTCTTTAGCAATCATCAGCTTTATCAAAAATCAATTcaagaaattgagaaaaaaaaagggAATTAAGCAATGGGCAAGAGAAACATATTTTATTGAATTTTGAAAATGTTTATCTAACCAGCTTATTTAGCTGTTCTGTGTTGCTAGCCAATATTACAGCATGGATAAGCTTtttaatataaaataaatatcatGCCTGTTTATATTAAAAACCCTATTGGGATGTCCTACAGTTACAATACAATGGTCCACTTTTTCCTGAATGTTTACACTTATTTCAGGTCTCAATCCAGTTTTAAAGACGATCTGAAAGTGACCACACAGCCAGCTACAAAGCACAATGTCCCCACATAGCCTTCTTTCAGGTCCCCTGAATAACCAATCAACTCAGGTCATTTGGAATGTACTACGACTCATGCATGAACTTTGACGTTGTCTTTTATGGTTCATTCATGACATTACTCCTAAGACATTCCATAGTCTTTAGACAAGTGCTGATTCTAATCTTTCAACACGACATATTAAAGGATTGCCATCGATAGAAATAACTTTGTGCATTGGAAATCTGTAAAGATAGTTTCAAGTGCTTAAAGAGACATTCCAGAGGTTATTATATTGTAGCTCCAAGATATCAGCAGTATTACCTTTTCAGAGCCTGTTCAATCTCCCTAGTGATGAAATTGATAAATATGAGCTATGACATTTTACCAATAAAATTGATCAAaataaggcctagattcaatcggATTAAGTGTTGACCAGCGTTGTCTTGAGTTTTGGCGGCGTCAGGTGTTACtgcgttggagctgtcaaatcggtgaACAAATGCTCCTGTgatcattgtcacgaagccaTACTCGTCTCACTCGCGATAGAAGTTCAGAaagagaaagtgtaggctatatagaaataatgaaaTTATTATTAATTATCAAATTGGAAAtcactaaacaaaataattagcatttctatcagcctaatcgaggtttagattacatctcacaatccagtgttcgaacttgtaaacaaggctacATGGGATTTCTCTCAATGCGTCTccatgcagccaatggcaatgtccgctttaggtataaCGCCGggagccgcttgtggatttgacagctctaatgcgGGTGTTGGCTAGTGCGCATCTGATAGAATCTAGccctaaaaaaaaatgttaagcatcaacaacaacaaaaaatagcaAAGCCGAAAGTTTTTAAAAAACTAAATAGATAAGCAATCACACACTTATAATTCTGTCAATCAGAATTAACATTGAGGCTAATGAGATTTTCAAAGCACTTAATTCGTGCAATTCCACAGATCTGTTAAAAATAAACTGAGTATCTTAGTGTTGATTTGACGTTCAGTATGGAGTAGAAATTTTCATGAAACTGTACAAGGGTTGGATTCAATCCTTAAGTAGCGCGGGAACGTCGCCTTTAAATATAAATCGAGCTATAACGTGGACCTCCCCCGATTAAATCCAGTCCATTACGTTAAAACCCCTTGGcattaatataaaaaaatattttaagtaACAACAGGCAAAACCAACATATGCAACACAATCCACTCAAACCTAGATGTATATTTTGTCAGTAAAGATGAACGCTGCTCAAATCATACTAACATATTATTTTCAAAGTTCAGCAAGGCTTGCCATGTTCGGCACTAATATTTCATGCCTGTGTATTTGTTTTATATGTAGACCTTGTTTTTACAATAAAGTAAGCAATAAAATTACA
>XM_021560149.2
CAGGTTTATCAGCCAGTAGTCTTGCGGATACAACTGTCATTTACAGTGGACATGGGGACGGTAGGGAAGCGCCAAAGATTAGGGAATATGTTTAGCTAACTGTATAAATTAAGTTTGTAAAACAACATATATTTAAAGTTATCGACAAAACATGCACAAAGAAGACTTGTTTTAGTGTTCTTCAGAAGCGGATATCTTGGCGATTTTTTTCCTGAAAGTGATACGAAGCAGCAGAATGTCAGTTCCCACCAACTCGCTTCAACAACAGTCCACAGTCAGACGTAGCAATGCAGGGTCCCCCAGTTTATCCAACAGCTGCCGTTTGCACCCCATCCGTGCTACCGTGCCCTACCAGCTCCTACGCGGGGGCCAGAGCAGCCCGAcacgctctctgcctctctctgttggAGGCAACAATGGACCGACAAATAGCCGCGGGTCATCTCCCCCAAGTGCGACACTGAATCTTGGAGTAAATTGCACTGGCGCCACGAGACAGAGACTGTCTCCTGAAAATAGGGTCTCGCACTCACCTGACCGGAGTCCAAACTCACCCGTTTGTAGAGGAGAGAGGTCCAAACTGCAGGTGCGTAGCTCCAGTGCTATCCGGCGGACATCTTCCCTGGACGCCATTATGGGGCCGTACCTCGCAGGCCAGTGGCCTCGTGACTCCCACGGACCCTACCCTTCCTGCATGAAAGACAAAGCCACACAGacATCTGGTCTGTGGATAGAGGAGGCTGGAGGGGAGCAGGGAAGCCCACACCAGCGGTCAGCTTCCTGGGGTAGTGCAGACCATCTGAAAGAGATTGCTAAACTCAGGCTGCAGCTCCAGCGCAGTAAACAGGTCAGCCGCCAGAGCAAAGACCGAGATCAACAGCTGGGACTACACACCAGCACCACATACCATCCCCAGAATAAGGTGGTTTCCACAGCGCTGTCGAACATCCCAGTGCCAAAGTCCCTCATATCGAGAGTGCCTAGCAGTGTGGAGGGCATCAACCACGAGCTGGAGAATGTGTTCATCAGAGAGGACTGGAAGCAGGGAATacagGCTTTGGACGTGTTGGATGGCCGCCGCGCCCCCTTTCAGCCTCATCGCTACGGCAATGGCGGTGACACACGTGACACGGACACCCAGGCCCCCTCTAGTGGCGGTTCCAGCCCCTGGGCCTGCCCCTTCACTCCTGACCCCCTCCACTCCCCAGAAGGCAGCCCCTGCTCTGCAGAAGAGCTTGACAAAGACAGCGGCTGCGGCTCTCCCCTTCCCAAGTTTGCCACCTCTCCCAAACCCAACAACAGCTACATGTTCAAACGGGAGCCTCCGGAGGGGTGTGAGAGGGTCAAAGTGTTTGAAGAGATGGTGTCTGGTGTCTCCAGAGGCTTCCCTCTTTTTTCATGCCCAGACAAAAACAAGGTGAACTTCATCCCCAGGGGCTCCGCCTTCTGTCCCGTCAAACTCCTCTGCTCCTCCCACTTCACCACAACCTCGCCCAGCCCTGGTCTCCATGCAAGAAGCAGCACATGGCCCGAGGACGCCATGACACCCGCTAGTTTCACTACTCTGGCCTCCACTAACTGGAGCTCGTCTAtaggcacagacatggtcagtAGCTCAGACACAGGCGTAGGCACCAACACAAGCACAGAGAACAGCACAGACAGTCTGAGCCCAGACACTAACACAGACACGGGTGAACTGACAAGCACAGCAGTGGTCCCAGGTGGCCTGTCTACAGATCCCTGCTCCACTACACACATCCTTCTTACCAGCTAGTTCTCAGGTACAGTCCAGCTTATGagcattagcctggtcccagatcagtttgagcTGTCTTGCTAACTCCTATGGTCGCAATGACCATAGTAGGTAGCAAAACAGCacaacagatctggaaccaggctagctGAGTATGGCTCTTTAACGCAACATTAGCCAGCAAGGAGGGCCTATCCTTACTAACCTAGCCTTCTCTTCTGAAAGGTGTGGCAGGCAAAATCCTCCAGAAAGACTTGTTTTCTTTTCAGAGGGTAGATTCGATTGTTTCATATATTGTGTTCTTTAGCAATCATCAGCTTTATCAAAAATCAATTcaagaaattgagaaaaaaaaagggAATTAAGCAATGGGCAAGAGAAACATATTTTATTGAATTTTGAAAATGTTTATCTAACCAGCTTATTTAGCTGTTCTGTGTTGCTAGCCAATATTACAGCATGGATAAGCTTtttaatataaaataaatatcatGCCTGTTTATATTAAAAACCCTATTGGGATGTCCTACAGTTACAATACAATGGTCCACTTTTTCCTGAATGTTTACACTTATTTCAGGTCTCAATCCAGTTTTAAAGACGATCTGAAAGTGACCACACAGCCAGCTACAAAGCACAATGTCCCCACATAGCCTTCTTTCAGGTCCCCTGAATAACCAATCAACTCAGGTCATTTGGAATGTACTACGACTCATGCATGAACTTTGACGTTGTCTTTTATGGTTCATTCATGACATTACTCCTAAGACATTCCATAGTCTTTAGACAAGTGCTGATTCTAATCTTTCAACACGACATATTAAAGGATTGCCATCGATAGAAATAACTTTGTGCATTGGAAATCTGTAAAGATAGTTTCAAGTGCTTAAAGAGACATTCCAGAGGTTATTATATTGTAGCTCCAAGATATCAGCAGTATTACCTTTTCAGAGCCTGTTCAATCTCCCTAGTGATGAAATTGATAAATATGAGCTATGACATTTTACCAATAAAATTGATCAAaataaggcctagattcaatcggATTAAGTGTTGACCAGCGTTGTCTTGAGTTTTGGCGGCGTCAGGTGTTACtgcgttggagctgtcaaatcggtgaACAAATGCTCCTGTgatcattgtcacgaagccaTACTCGTCTCACTCGCGATAGAAGTTCAGAaagagaaagtgtaggctatatagaaataatgaaaTTATTATTAATTATCAAATTGGAAAtcactaaacaaaataattagcatttctatcagcctaatcgaggtttagattacatctcacaatccagtgttcgaacttgtaaacaaggctacATGGGATTTCTCTCAATGCGTCTccatgcagccaatggcaatgtccgctttaggtataaCGCCGggagccgcttgtggatttgacagctctaatgcgGGTGTTGGCTAGTGCGCATCTGATAGAATCTAGccctaaaaaaaaatgttaagcatcaacaacaacaaaaaatagcaAAGCCGAAAGTTTTTAAAAAACTAAATAGATAAGCAATCACACACTTATAATTCTGTCAATCAGAATTAACATTGAGGCTAATGAGATTTTCAAAGCACTTAATTCGTGCAATTCCACAGATCTGTTAAAAATAAACTGAGTATCTTAGTGTTGATTTGACGTTCAGTATGGAGTAGAAATTTTCATGAAACTGTACAAGGGTTGGATTCAATCCTTAAGTAGCGCGGGAACGTCGCCTTTAAATATAAATCGAGCTATAACGTGGACCTCCCCCGATTAAATCCAGTCCATTACGTTAAAACCCCTTGGcattaatataaaaaaatattttaagtaACAACAGGCAAAACCAACATATGCAACACAATCCACTCAAACCTAGATGTATATTTTGTCAGTAAAGATGAACGCTGCTCAAATCATACTAACATATTATTTTCAAAGTTCAGCAAGGCTTGCCATGTTCGGCACTAATATTTCATGCCTGTGTATTTGTTTTATATGTAGACCTTGTTTTTACAATAAAGTAAGCAATAAAATTACA

Function

NR:

description
glucocorticoid-induced transcript 1 protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560143.2 False 3815 mRNA 0.45 9 34432779 34464593
XM_021560149.2 True 3812 mRNA 0.45 9 34432779 34464593

Neighbor

gene id symbol gene type direction distance location
LOC110488092 LOC106605261 coding upstream 555 34423390 ~ 34432224 (+)
LOC110534788 NA coding upstream 26894 34398314 ~ 34405885 (+)
LOC110488078 LOC106605262 coding upstream 36191 34384506 ~ 34396588 (+)
LOC110488056 LOC106605265 coding upstream 66491 34350218 ~ 34366288 (+)
nr1d2a LOC106582110 coding upstream 96908 34327950 ~ 34335871 (+)
LOC110488146 tmem106b coding downstream 161768 34626361 ~ 34634974 (+)
vwde LOC106605201 coding downstream 179842 34644435 ~ 34646777 (+)
si:dkey-30e9.6 LOC106605205 coding downstream 223516 34687955 ~ 34692286 (+)
arl4aa LOC106605206 coding downstream 228017 34692610 ~ 34695204 (+)
LOC110488257 LOC106605215 coding downstream 496778 34961371 ~ 34964552 (+)
G135295 LOC106582155 non-coding upstream 24302 34408152 ~ 34408477 (+)
G135261 NA non-coding upstream 65735 34366732 ~ 34367044 (+)
G135023 NA non-coding upstream 104143 34276292 ~ 34328636 (+)
ube2e2 LOC106582102 non-coding upstream 115314 34279641 ~ 34317474 (+)
G134970 NA non-coding upstream 262352 34170099 ~ 34170427 (+)
G135316 NA non-coding downstream 4296 34468889 ~ 34470198 (+)
G135341 LOC106582184 non-coding downstream 45887 34510480 ~ 34511713 (+)
G135380 thsd7a non-coding downstream 89980 34554573 ~ 34555365 (+)
G135671 NA non-coding downstream 273689 34738282 ~ 34738494 (+)
G135685 NA non-coding downstream 292038 34756631 ~ 34757180 (+)
G134735 LOC100136012 other upstream 470121 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 618296 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 935494 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1263401 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2545207 31834170 ~ 31887572 (+)
G135916 NA other downstream 507047 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 507856 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 520379 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 687167 35151760 ~ 35153650 (+)

Expression


Co-expression Network