LOC110488138 (LOC106605258)


Basic Information

Item Value
gene id LOC110488138
gene name LOC106605258
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34484065 ~ 34493285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560176.2
tctctctctctctccctcctcctgcctctctctatccctctctctctctctctacctctttctctcttctctttctctcgctctataAAACATCACATAACACTGACAATCAGACCTACAAGCACTACGATTCACGCAACACCGCTACTAATCCTGCAACAAAGAACGTATCATTCACATCTTCCAATAGACAAAACATAGACAGAGCATTTGATTTTCAGCCATCAGTCAATCTGAAGATTGATTCCTGCTATTTGCTCGGGTTTCCCTTTGTCATTTATCTCTAGTTGTGGCATTTTTACATAgtccattttattttatttttcaagaAAGGGATTTGCGTACAGGTAGGCATGAAAAGTGAAGGTCTACCAAGAGGAATGAAGTCCACATGTTGGTGCGTTGTTCTCCTGTCACTCATTTCTATGGTTACAAGTGCCCATTCGTCTGCTTCTGGAAGTTCAGACGTTCTGAAGTCAGAGAGCCCGAAGTCGAGAGCTAAGGACCTCTGGACAACAGACACCAGCAAGGACTTATCCATCAGTCGCCTGCTCTCCCAGACCTTTTATGACAAGAACCTGTCTGGCCTGGATCTGAACTATGACAAGTTGGAACCATACTCTAAACAGGAGCTCTGGGACTGGCTCCACAACACCTCTAGCCTTCGTGACCCCCGCTCCCGATCCAAGAGGAGACCCATCGTCAAGACAGGAAAGTTCAAGAAGATGTTCGGCTGGGGCGACTTCCACTCCAACATCAAGACAGTGAAGCTCAACCTGCTGATCACCGGGAAGATCGTAGACCACGGCAACGGCACGTTCAGCGTCTACTTCCGCCACAACGCGACGGGCCAGGGCAACGTGTCGGTGGGTCTGGTGCCGCCCACCAAGGCCGTGGAGTTCCAGCTGCAGCAGTCGACGGTTCTCGAGCCCAAAGACACCAAGCTGTTCAACTGCAGGGTGGAGTACGAGAAGGTGGAGAAGGGCACCAGGAAGTCGTTGTGTTCCCACGACCCTTCGCAGAGCTGCCCTCAGGAGCAGACCCAGAGCCATGTGTCCTGGCTGTGCTCCAAGCCCTTCAAAGTCATCTGCATCTACATCTCCTTCTACAGCACCGACTACAAGCTGGTGCAGAAAGTGTGTCCGGATTACAATTACCACAGCGATACTCCCTACCTCCCCACCGGATGATTGGCTGAGCGGCTAAGGGaatggaacagagacagacagggcatTCGCTCCTGAGAGGTGTCAGTTGATTTGAGCTAGGCTGGCACGGCCCTCAATAGAACAGAGGGGGATGCTTTACTGTCGGAACAGAACTGTTAAAAGGTATTATTAAAGCTAATGCGTCCCTGCTGCTTGTGAGATCGCTACACTGAGCAGACCTTCCCTATGGCCATTGTACAAGCATTTAGGACACAACATTTCCTGGCTTGACATACTTTTTCCTCATGTATTTTGACCCTCTATAGTAGCTATACGAAAGTACTCAGCCGGAGCCCTCGCTGAAGGTTTGCCATTATGTAAATAATAACTCATAAAGCCCACTTTATTCTATTAGAAAGTGTTTCGATcttctaatgtaactctgtgtgttgatGGAATAGCATTTTTCATTTTCCCTCATTGTCCGTTTCTGTTTGTCGCTGGTGATTACAAAGCGGGAAATGAAATGGGTAGATGTCAACTTACTGTGAAGGAAAGTGTCCGAACGCATTAAGATGTGCCATCTATTTCATCACGTGTTTGTATCTGTATGACAGCCAGAAATACAGATCCTTTCAAAATGCTTTCTTTTTCAGTCTCAGTGAATTATTGAAACATCAACATCACATTTAATAAGAGCAACTCTTAAAAAAGAacaaaaaacataaaataaaacacttcctacagatatacactgagtatacctaacattaggaacaccttcatagtattgagttgcacccccttttgccttcagaacagcctcaattagtcagGGCATGGAGTCTATAAGGTGTCAAACGCGTTCCACAGatatgctggcccatgttgacgctaatgcttcccacaattgtgtcaagttggctggatgtccttttggagGGTGGACCATGCTTGATAcaaatgggaaactgttgagtgtgagaaacccagcagcgctgcagttcttgacacaaaccggtgcacctggcacctactaccataccccgttcaaaggcacttaaatcgtttgtctttcccattcaccctctgaatggcacacatacacaatccatgtctcaattgtttcaaggcttaaaaatacttctttaaccggtctcctccccttcatctacactgattcaaTGAAGAGTCATAGCTttcccctggtcagtctatgtcatggaaagagcaggttttaATGTGTTTGTATGCTCAGTGTACATTGTTTTCGGTAGATAAAGAAAAAAAATGCTAGCAATGGTTTTCAGCtctgacatggatgccatgttgATAGCAATCTCTTGCCATCAGTTATATCCTATCCGACACAAGTTAATGTGGAGTAAATCAGCTCAATGATGGACTTTCATTCATTATGGATCTAAGTGTATttcaatattttaaaaaataaccaTTTATGTTTGCCccatgagaaaaaaaacacagtaAAGAGTCCCCACTCTGTTCGCTATAAAACATTAAGGAAGTTACAGCATAAAATGTGCTGCTTGCCAGAGGACATGTATTAAACTACAGGGGCATCTCTCCACACATTATAACAGCCACTTCTGACATCAATAACGCAAATtctggatgatgatgatgtaatAACACTATACGATAATGATGCTGGATGTTCGATTTGGCCATTAAGCTTTCATTACGCAAATGTGATGCTTGTAGCTGATTGTGAAACATCTCTGAGAACCATCACTGTGATTGTCATCCCTGTGTGAGAGAATAATGTCTGGGAATTACACTGATACACAACGGGAGTAGAAGTCCTTCATGAGGTTGATAGGCACCTTGAGGTGGAGTTATTTATGCGGTTTGCATTGCACATCTAACTAGTCAACTACTACAGGGTCTTTAGTACTGTACACGTGCACACAGACTCGTTTGTTGTTGACACAACTGACAAAAATGGAATGGAAGATTTGACAAGGTACTTCATCAGAAATAGGGGTTTGTTTCCTATGAAGAGAGGGGCCCATGTGATAAGAGAGTGTGAACAGGGATTTATGATGTGGATGAACAAAGCTGACAGAAATAAGCATTAACATTTGACTCGTAAATTGAGAGCAGTTATCTGTCATCATGGCTACTGGATGACAAATGTCTCAGATTATTTTATTTGAGTGGGTCTTCCATTTTTATAAAGTGTAATTTTCTGTATAAGATCAGTTAAATATGTTGCCAAATTGGACACTCGTCTTCATTTTGTGGAATACACTATACTGTACTTGAGTTATGgctaattattatttatttgaaataTATGTATGAATTCAATTGCACTCTTTTAGATGGGCCATGTCTGATAGTTGCCATGTCCGAGTCTAAGCTCTATCTGGTACCATTTCTACGAATGAaactctctatctgtaatatacTACTGCATAATTACCGCAAGGCTTTTGATGAGTGAATTATCCCCCACCTCAGATCCAGTCCGTTGGTGCAGTTGTCCTGGGCCATAGCCGCACACCAAGCCTCTGGTCTCCTCCTGCTCTCAGATAACTACCTGAATAATGTGGTCTGGGGAACTGTCACCAATGGCAGATAGAATCAGGGGATTTCTCCTTCAGACTCCCAATAACACCCAGCAGCTGCAGGAGTAAACAGATGACTAACCACTGGCCTTTTGGCAGCCATTTGagactgggaggaggaggagacctgTAAACGTTGCCTTGACATTTAGGTGGATTAAAAAGTTATTGGGATCCGGCTCTCCTGGTGTCAGAGGTAGTTGGCTCCGTAATTAATTGTGTCTTGGTCTTTTTTCAAGAAGCTCAGCTAAAAGCCTGCTAAGTATCATGCTTGTTGCAGTCCTTCACCTTGTAGGGCTAGGTACACTTGGTTAGCCTAGCTCTTTATCTGATATGACATCTACATTAGTGACCCAATAGCATATCACTCATAAACAGATAACCAGGTGGGATGTCAAATGACATATCTGAGTTTGTGCAATTGGCATCTAGTTCCAGAGTAATTCATTCATGTAACTTTGTATCTTGTTATGTTATTGCAGAATTCATGTTATGTTTTGCTTTGAATCTGTGGTGTTAATTTCTGTGTGAAATGCTGACATATTAAAGCCCTATCAGACAA

Function

NR:

description
neurexophilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560176.2 True 4304 mRNA 0.43 2 34484065 34493285

Neighbor

gene id symbol gene type direction distance location
LOC110488127 ica69 coding downstream 8694 34465066 ~ 34475371 (-)
LOC110488086 LOC105021885 coding downstream 61272 34406067 ~ 34422793 (-)
nek10 nek10 coding downstream 100039 34370816 ~ 34384026 (-)
LOC110488012 LOC106605268 coding downstream 249216 34193659 ~ 34234849 (-)
LOC110534780 pp2d1 coding downstream 296054 34186054 ~ 34188011 (-)
LOC110534798 LOC106582184 coding upstream 237 34493522 ~ 34600391 (-)
LOC110534811 LOC106582196 coding upstream 153670 34646955 ~ 34677655 (-)
etv1 etv1 coding upstream 247210 34740495 ~ 34759145 (-)
dgkb dgkb coding upstream 268880 34762165 ~ 34815174 (-)
LOC110488219 agmo coding upstream 331648 34824933 ~ 34849214 (-)
G135438 NA non-coding downstream 10588 34443079 ~ 34473477 (-)
G135406 NA non-coding downstream 19477 34464322 ~ 34464588 (-)
G135441 NA non-coding downstream 30974 34450627 ~ 34453091 (-)
G135409 LOC106605262 non-coding downstream 90658 34384555 ~ 34393407 (-)
G135265 NA non-coding downstream 115990 34367497 ~ 34368075 (-)
G135522 NA non-coding upstream 107598 34600883 ~ 34601451 (-)
G135668 NA non-coding upstream 242336 34735621 ~ 34736034 (-)
G135850 NA non-coding upstream 384453 34877738 ~ 34878215 (-)
G135950 NA non-coding upstream 411559 34904844 ~ 34905084 (-)
G135980 NA non-coding upstream 458561 34951846 ~ 34952080 (-)
G134668 NA other downstream 618128 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1258963 33208500 ~ 33225125 (-)
G134102 NA other downstream 1695944 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 1732487 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 2835270 31631886 ~ 31648795 (-)
G135575 NA other upstream 110930 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 813082 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 1181013 35674291 ~ 35700846 (-)
G137479 NA other upstream 1876719 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 2140908 36634193 ~ 36639005 (-)

Expression


Co-expression Network