LOC110488146 (tmem106b)


Basic Information

Item Value
gene id LOC110488146
gene name tmem106b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34626361 ~ 34634974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560187.2
TTGAAGGTTTCCACATTACCATACGAAAGTGACGTCTCGTCGGAGCTGCTGGCAGAATACTAGTGCGTGTATTTATGTCAGTACTATATTGATAACAACAGCGGCTATTCGTGACCAAGCATATGTAAAGCAATTCTGCGTGAATATATGCAAAGAAAGTGATGGGGAAGTCACACTCCCTCTTGTCGAAGGGGAAAGCCGACCGTGACAGCCAGAGTGGCCTGACGACTGGTCCAgagtacatagacacacagagtgAAGAGGATGGAAAGAATGGAGATGTGTCTCAGTTCCCCTATGTGGAATTTACTGGCAGAGACAGTGTCACATGCCCCACATGCCAGGGCACTGGCAGAATACCACGAGGCCAAGAGAACCAGCTTGTGGCTCTGATTCCATACAGTGACCAGAGGCTCCAGCCAAGGAGAACAAAGCTGTATGTCACGGTGTCTGTGTTTCTATGCCTCCTGCTGTCTGGCCTGGCTGTGTTTTTCATGTTCCCTCGGTCTATCGACGTCTCCTATGTGGGCGTGAAGTCAGCATTCGTCTCCTATGACCAGGACAAACGGATTGTCTATCTCAATATCACGAACACTCTGAACATCACCAATAACAACTACTACGCTGTATCCCTGACCAACATCACAGCCCAAGTGCAGTTCTCTAAGACAGTGATTGGGAAGGCCCGTATTAGCAATGTGACGACCATCATACCACTGGATAAGCAGCAGATTGACTACATGGTTCCCACAGTCATTGCTGATGAGATGAGTTATATGTTTGACTATTGCACCCTGCAGTCCATAAAGGTTCACAACATTGTGGTCATGATGCAGGTGACAGTGACCACATCCTACTTTGGGCACTCGGAGCAGGTCTCCCAGGAGATATACCAGTATGTGGACTGTGGGGGCAACACCACCTCGCTGCATGGACATGTGAAGATGTATCAGTAAGGCAGTCAAAACTCAGCCATAATGGAAGCCCATCCATCTAAAGGCAGACGAGAGGGTTTTTACGGAGTTCCTTTGGGCACACGTCCCCTGGAGAATAGGAGGAACCATGAAGCAAGGTACCAATGTTCAGTGTAATGAGGGTTTGAGGATGTCGCAGGTAGAAAATCTCTTCCTAATCGAATGACCCAATCCAATGTGTACAGGCATTTGAGGTAAAGATGCACTTTAGCTTTGTATGGGAAACGCAATCATCAGAAAGTATTTATATGGCAGAGTTGTTGATGTAATGTAGTCTGTACCACTAACCTTCCCAGAACACTAGCTTTGGGACGTGCAATACAAATGAAGTAATAGGACAGCATCCTCATTTGGATTACCAGCACCACTAATCACCCCTAACCACTTTTTTGATGGCATTTTAtgccattctttttttttttatataccagCCATTTTGTTTTCTTCAAGGATGTATTTTGTACAAAATAGTACTTCCTGATGATGTGTGTCGTTACACTTACATTTTCATTGTAATGATAGAATGAGACGTAAATCTAACTGAGGTGGCAGATCATGTCGGGGTGGAGTCGGCGTAATTGTGATGACTACGGACCACAATTAGATTGCGACATTTAGGGATCTAATGAGAGGGATCTTGTATTTTTTATATAATTCAAATACTGTACCTATAACTATTAGATGTGGTGTTTTATGATGTGAATTACTCTTTAATTGTAAACCTCTGAATTGTTTGTTGTAATGGGAATGTTACAGGGTTTTTTTCTAACTTGGGTAGTAGACGGCTACCCATTTCGAAACATGATATTACATAGATACCCTCAATGGTGTTGTAAAATTAGGTTTTTATTTTCTCTTTGGGAATCGATTTTAAAGAGGTCATTTTGTCTTTACATTTTTAATTTGATGCCCTTTGCCCCTTTTTTAATTTGTCATGATTGATCACTGAAACTCGCAAGTAAGTTGTGCTTTTCGAGTTTGTGTTTCTTTCTGagatgattaaatgtcaggatacAGTAAGTATCCATTTTGTTATTTTCCTTAAACATTTGTTATTGCTTTTAACATCTGTTGTGCATGCACGGAATACTGAACTGAggacaataaaaatgcccaagaTAAAATATCAGATGTGTACATTGTTTATATTATCTGATATACACTATGGAGGAACAATCACACCAATGTATCGTTGTATATGTCAATGTGCCATATTATGTACCAAATCACCCAAGAAGGAACATTTTCATCAGTTTAAAGTCAGTTCTGAATCCTCACTGAGGCGCGTTGACTGTGTACTACTGTGTAAATGTGGATACTGTCCATGTAAGCCACTGCCAatcatacagtacatgtaacaATGTTTTTTTCCTTGCATGAAACTGGGAATAAAAGTGGTTGATTTTGA

Function

symbol description
tmem106b Enables ATPase binding activity. Involved in dendrite morphogenesis and lysosome localization. Located in endosome and lysosomal membrane. Implicated in hypomyelinating leukodystrophy.

NR:

description
transmembrane protein 106B-like

GO: NA

KEGG:

id description
K25048 TMEM106B; transmembrane protein 106B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560187.2 True 2382 mRNA 0.41 8 34626361 34634974

Neighbor

gene id symbol gene type direction distance location
LOC110488114 LOC106582161 coding upstream 161768 34432779 ~ 34464593 (+)
LOC110488092 LOC106605261 coding upstream 194137 34423390 ~ 34432224 (+)
LOC110534788 NA coding upstream 220476 34398314 ~ 34405885 (+)
LOC110488078 LOC106605262 coding upstream 229773 34384506 ~ 34396588 (+)
LOC110488056 LOC106605265 coding upstream 260073 34350218 ~ 34366288 (+)
vwde LOC106605201 coding downstream 9461 34644435 ~ 34646777 (+)
si:dkey-30e9.6 LOC106605205 coding downstream 53135 34687955 ~ 34692286 (+)
arl4aa LOC106605206 coding downstream 57636 34692610 ~ 34695204 (+)
LOC110488257 LOC106605215 coding downstream 326397 34961371 ~ 34964552 (+)
LOC110488281 apom coding downstream 349974 34984948 ~ 35000555 (+)
G135380 thsd7a non-coding upstream 70996 34554573 ~ 34555365 (+)
G135341 LOC106582184 non-coding upstream 114648 34510480 ~ 34511713 (+)
G135316 NA non-coding upstream 156163 34468889 ~ 34470198 (+)
G135295 LOC106582155 non-coding upstream 217884 34408152 ~ 34408477 (+)
G135261 NA non-coding upstream 259317 34366732 ~ 34367044 (+)
G135671 NA non-coding downstream 103308 34738282 ~ 34738494 (+)
G135685 NA non-coding downstream 121657 34756631 ~ 34757180 (+)
G135861 NA non-coding downstream 260305 34895279 ~ 34895499 (+)
G135865 NA non-coding downstream 266586 34901560 ~ 34901780 (+)
G135873 NA non-coding downstream 278752 34913726 ~ 34914891 (+)
G134735 LOC100136012 other upstream 663703 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 811878 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 1129076 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1456983 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2738789 31834170 ~ 31887572 (+)
G135916 NA other downstream 336666 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 337475 34972449 ~ 34972801 (+)
lypc LOC106584559 other downstream 516786 35151760 ~ 35153650 (+)

Expression


Co-expression Network