arl4aa (LOC106605206)


Basic Information

Item Value
gene id arl4aa
gene name LOC106605206
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34692610 ~ 34695204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560237.2
TTTATACTATTGACCAATCAGTTTGAAAGTAAACAGATAAGGACGCATCATGGGGCGGCGCTGTTTAGCGTGTATCAAAACCCAAGCCAAGGAACATTGGACACACGaacacagcaacaacaaaaaaacggtCACTGTTGTCTTCTAATTGGAATATAATCAGTGCCAATCATCGTTGGAAAAGTAGACCAACCCTTTTATTCCACCTGTTGTTCCCCACATGAGAAAAGATGGGGAATAGATTATCAGAACCACAGACCTTCCTCTCAAGAATCCCCTTCTTTCAGTCATTCCATATCGCCATTTTGGGACTGGACTCTGCAGGTAAAACAACTGTCCTGTACAGGTTGCAGTTCAATGAGTTTGTCAACACAGTGCCTACCAAAGGCTTCAATGCAGAAAAGGTCAATGTGTCTTTGGGCGGCCACAGGACGGTGACCTTCCATTTCTGGGACGTGGGTGGTCAAGAGAAGTTGCGTCCATTGTGGAAGTCATACACACGCTGTACCGATGGAATTGTATTCGTGGTGGACTCTGTAGATGCCGAACGCATGGAGGAGGCTAAAACGGAGCTCCATAAGATCGCCAAGACCGGAGACAACCAGGGAGTGCCACTGCTGGTGGTGGCTAACAAGCAAGACCTGAGGCACTCTCTGAGCCTGGCGGAGATTGAAAAGGCACTAGCGTTGAAGGAACTGGGCCCTGGCACGCCTTGGCACCTGCAGCCCACCTGTGCCATCATAGGAGACGGACTGAAAGATGGCATGGAGAGACTCCATGACATGATCCTTAAACGGAGAAAGATGCTCCGCCAACAGAAGAAAAAGAGATGATCAAGGAGGGAACTGAATCTCTTGTTTTAAATGAAGGACAAAAAGGAGATGTTCTCGCACCTGGGTGGATATAGGAATTCTCCCATAGGCTCGGCACACTGAGTTATATCAGTCAATGTTAAACTAGGTTCTCGTGTCTCAGACAGCAAAGTCTCTTGCTTCATCTTCAGTATTTGTTGCTTTTTAGTGGTTGAGAAAGCACTATGAAGGTAAAGGATTTGGTGTTTCTGAATTTATATAGGAATTTGTAAATTGTCGTTACAAAGAATGGTTTTGATCCTTGATGTTAGACCATTAGTAATGGCTACTTCAAAATTGAACACCAAAAATGACATGTTTGATGAAGAACAGAAAATAATTAACTTCTCTCTACAAAGGTTAGTGGGAGGACAACAAACGTGGTCTTCCTCAAAGGGAACTTTTGAACCTTGTAAAGAGTGCCTAAGCTACTTTTAAATGTTGTacctttttggacatttttgttttacatgtttctttccttctcaaaAGGAAGGTACAGTCTTGCGCTTTTTGTCTGTCTAGTGTACCTCTACTGTCTGTTTGTTAATGCACTTTAGATGACCTTTTTTGATGGAGTTTACAGCCTTGAGGTTTCCCAATATAGCTTATTACTCAAAGAGTTTAGTTGCTTCAGAAGAAGCCAACTGTACTGGGTCCCTATTGGCCACATGGACAATAGATGGGATATGTGTTTCATGTTTTCATCTTTAATTAAAAAAACTTTTTGCAGCA
>XM_021560219.2
CGTTTGCTAGAACATGAGCAGGGTTTTCCACAAATTGCACTGCAGTATTATTCTATGGGAATGAAACCGTCTAGTAAAATAATAGGACGCTGCTGAGCTCGCGACAGTCATCAGAAGCTCTGTATTGTGAACATTGGATAACATGTTACTGGACCTCGTGAACACAGTTCCGCGTATTCAGAGTGGATAGATgtCACTGTTGTCTTCTAATTGGAATATAATCAGTGCCAATCATCGTTGGAAAAGTAGACCAACCCTTTTATTCCACCTGTTGTTCCCCACATGAGAAAAGATGGGGAATAGATTATCAGAACCACAGACCTTCCTCTCAAGAATCCCCTTCTTTCAGTCATTCCATATCGCCATTTTGGGACTGGACTCTGCAGGTAAAACAACTGTCCTGTACAGGTTGCAGTTCAATGAGTTTGTCAACACAGTGCCTACCAAAGGCTTCAATGCAGAAAAGGTCAATGTGTCTTTGGGCGGCCACAGGACGGTGACCTTCCATTTCTGGGACGTGGGTGGTCAAGAGAAGTTGCGTCCATTGTGGAAGTCATACACACGCTGTACCGATGGAATTGTATTCGTGGTGGACTCTGTAGATGCCGAACGCATGGAGGAGGCTAAAACGGAGCTCCATAAGATCGCCAAGACCGGAGACAACCAGGGAGTGCCACTGCTGGTGGTGGCTAACAAGCAAGACCTGAGGCACTCTCTGAGCCTGGCGGAGATTGAAAAGGCACTAGCGTTGAAGGAACTGGGCCCTGGCACGCCTTGGCACCTGCAGCCCACCTGTGCCATCATAGGAGACGGACTGAAAGATGGCATGGAGAGACTCCATGACATGATCCTTAAACGGAGAAAGATGCTCCGCCAACAGAAGAAAAAGAGATGATCAAGGAGGGAACTGAATCTCTTGTTTTAAATGAAGGACAAAAAGGAGATGTTCTCGCACCTGGGTGGATATAGGAATTCTCCCATAGGCTCGGCACACTGAGTTATATCAGTCAATGTTAAACTAGGTTCTCGTGTCTCAGACAGCAAAGTCTCTTGCTTCATCTTCAGTATTTGTTGCTTTTTAGTGGTTGAGAAAGCACTATGAAGGTAAAGGATTTGGTGTTTCTGAATTTATATAGGAATTTGTAAATTGTCGTTACAAAGAATGGTTTTGATCCTTGATGTTAGACCATTAGTAATGGCTACTTCAAAATTGAACACCAAAAATGACATGTTTGATGAAGAACAGAAAATAATTAACTTCTCTCTACAAAGGTTAGTGGGAGGACAACAAACGTGGTCTTCCTCAAAGGGAACTTTTGAACCTTGTAAAGAGTGCCTAAGCTACTTTTAAATGTTGTacctttttggacatttttgttttacatgtttctttccttctcaaaAGGAAGGTACAGTCTTGCGCTTTTTGTCTGTCTAGTGTACCTCTACTGTCTGTTTGTTAATGCACTTTAGATGACCTTTTTTGATGGAGTTTACAGCCTTGAGGTTTCCCAATATAGCTTATTACTCAAAGAGTTTAGTTGCTTCAGAAGAAGCCAACTGTACTGGGTCCCTATTGGCCACATGGACAATAGATGGGATATGTGTTTCATGTTTTCATCTTTAATTAAAAAAACTTTTTGCAGCA
>XM_021560228.2
GATGCCCTGCACGAAAGATGTCTGGCTGGACGGAACGGTTGTAGACTATTATAAAGATTTATGCCGCAATTTGAGAGCCTGGTATCAGGTCAAGTGGCGTTACTGGCTGTCAGCATCTGTATGCCTATCGACTTTATCTTAATTTACGCGCCTATCTTTGGCAATAGgtCACTGTTGTCTTCTAATTGGAATATAATCAGTGCCAATCATCGTTGGAAAAGTAGACCAACCCTTTTATTCCACCTGTTGTTCCCCACATGAGAAAAGATGGGGAATAGATTATCAGAACCACAGACCTTCCTCTCAAGAATCCCCTTCTTTCAGTCATTCCATATCGCCATTTTGGGACTGGACTCTGCAGGTAAAACAACTGTCCTGTACAGGTTGCAGTTCAATGAGTTTGTCAACACAGTGCCTACCAAAGGCTTCAATGCAGAAAAGGTCAATGTGTCTTTGGGCGGCCACAGGACGGTGACCTTCCATTTCTGGGACGTGGGTGGTCAAGAGAAGTTGCGTCCATTGTGGAAGTCATACACACGCTGTACCGATGGAATTGTATTCGTGGTGGACTCTGTAGATGCCGAACGCATGGAGGAGGCTAAAACGGAGCTCCATAAGATCGCCAAGACCGGAGACAACCAGGGAGTGCCACTGCTGGTGGTGGCTAACAAGCAAGACCTGAGGCACTCTCTGAGCCTGGCGGAGATTGAAAAGGCACTAGCGTTGAAGGAACTGGGCCCTGGCACGCCTTGGCACCTGCAGCCCACCTGTGCCATCATAGGAGACGGACTGAAAGATGGCATGGAGAGACTCCATGACATGATCCTTAAACGGAGAAAGATGCTCCGCCAACAGAAGAAAAAGAGATGATCAAGGAGGGAACTGAATCTCTTGTTTTAAATGAAGGACAAAAAGGAGATGTTCTCGCACCTGGGTGGATATAGGAATTCTCCCATAGGCTCGGCACACTGAGTTATATCAGTCAATGTTAAACTAGGTTCTCGTGTCTCAGACAGCAAAGTCTCTTGCTTCATCTTCAGTATTTGTTGCTTTTTAGTGGTTGAGAAAGCACTATGAAGGTAAAGGATTTGGTGTTTCTGAATTTATATAGGAATTTGTAAATTGTCGTTACAAAGAATGGTTTTGATCCTTGATGTTAGACCATTAGTAATGGCTACTTCAAAATTGAACACCAAAAATGACATGTTTGATGAAGAACAGAAAATAATTAACTTCTCTCTACAAAGGTTAGTGGGAGGACAACAAACGTGGTCTTCCTCAAAGGGAACTTTTGAACCTTGTAAAGAGTGCCTAAGCTACTTTTAAATGTTGTacctttttggacatttttgttttacatgtttctttccttctcaaaAGGAAGGTACAGTCTTGCGCTTTTTGTCTGTCTAGTGTACCTCTACTGTCTGTTTGTTAATGCACTTTAGATGACCTTTTTTGATGGAGTTTACAGCCTTGAGGTTTCCCAATATAGCTTATTACTCAAAGAGTTTAGTTGCTTCAGAAGAAGCCAACTGTACTGGGTCCCTATTGGCCACATGGACAATAGATGGGATATGTGTTTCATGTTTTCATCTTTAATTAAAAAAACTTTTTGCAGCA

Function

NR:

description
ADP-ribosylation factor-like protein 4A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560237.2 False 1586 mRNA 0.43 2 34692610 34695204
XM_021560219.2 False 1648 mRNA 0.43 2 34693092 34695204
XM_021560228.2 True 1623 mRNA 0.43 2 34693290 34695204

Neighbor

gene id symbol gene type direction distance location
si:dkey-30e9.6 LOC106605205 coding upstream 324 34687955 ~ 34692286 (+)
vwde LOC106605201 coding upstream 45833 34644435 ~ 34646777 (+)
LOC110488146 tmem106b coding upstream 57636 34626361 ~ 34634974 (+)
LOC110488114 LOC106582161 coding upstream 228017 34432779 ~ 34464593 (+)
LOC110488092 LOC106605261 coding upstream 260386 34423390 ~ 34432224 (+)
LOC110488257 LOC106605215 coding downstream 266167 34961371 ~ 34964552 (+)
LOC110488281 apom coding downstream 289744 34984948 ~ 35000555 (+)
lt-b2 lt-b2 coding downstream 309376 35004580 ~ 35009706 (+)
tnf-alpha tnf-alpha coding downstream 327803 35023007 ~ 35025008 (+)
LOC110533739 ppt2a coding downstream 427599 35122803 ~ 35127514 (+)
G135380 thsd7a non-coding upstream 137245 34554573 ~ 34555365 (+)
G135341 LOC106582184 non-coding upstream 180897 34510480 ~ 34511713 (+)
G135316 NA non-coding upstream 222412 34468889 ~ 34470198 (+)
G135295 LOC106582155 non-coding upstream 284133 34408152 ~ 34408477 (+)
G135261 NA non-coding upstream 325566 34366732 ~ 34367044 (+)
G135671 NA non-coding downstream 43078 34738282 ~ 34738494 (+)
G135685 NA non-coding downstream 61427 34756631 ~ 34757180 (+)
G135861 NA non-coding downstream 200075 34895279 ~ 34895499 (+)
G135865 NA non-coding downstream 206356 34901560 ~ 34901780 (+)
G135873 NA non-coding downstream 218522 34913726 ~ 34914891 (+)
G134735 LOC100136012 other upstream 729952 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 878127 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 1195325 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1523232 33167438 ~ 33169378 (+)
G135916 NA other downstream 276436 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 277245 34972449 ~ 34972801 (+)
lypc LOC106584559 other downstream 456556 35151760 ~ 35153650 (+)
LOC110488391 LOC106582385 other downstream 485475 35180650 ~ 35184002 (+)

Expression


Co-expression Network