crppa (ispd)


Basic Information

Item Value
gene id crppa
gene name ispd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34913696 ~ 34946214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560368.2
GGGGCTTCCTTGACAGCGCGCATGTGCAGCACTGTGGCTACAATGTAGCAGGATACAAATCGAATCAATCACTGGTCTACGCGACTCCGCCCATAAAGGAATGAATGAAACTGTATATGGGGATACCGATAGGACGTATTCGTGACCTCAGATGTTAGTCCGTTTTAACTTCAAATCACTCAATTGCCCTGAAGCACGTAAAAGGATACGGGCGACATGGACAGGCCTGTTGAACCAGGACATTTCTCAGCATGCGAAGCCCGGTTGGACAAGCACATTGCGGGACGTTGCAGCGTGGATTTCCCGGTAGCTGTGGTTCTTCCAGCCGGTGGCAGTGGAGAAAGAACCGGGCTACTGACACCCAAACAGTTCTGCACGTTTCTCAACAGACCTCTGATAAGCTACACAATTCAAACTTTCGAGAGAGTGCCATGGATCCAAAGCATCGTTGTGGTGGTTGCCAAGGAGAGCTTAGATTTGATGATGGACATTATCCATCGCTTCCACCACAGAAATGTCCTAGTGGTACATGGTGGATCTACTCGCCACAGATCTATCTTTAATGGGGTCCGAGCCCTCAGTGAGGGAGAGGGTGGTACGGACCGCGTCAAACCAAAGGTGGTCATCATCCATGATGCAGTGCGGCCCTTTGTGGAAGAGGACTTCCTCCTCAAGATAACAATGGCTGCCAAAGAACAAGGGGCTGCTGGGGCTATCCGACCTCTGGTTTCCACAGTGATTGCTACCACATTGGAGGGCTACCTGGACCATTCTCTGGAGAGAGCCATGTACAGAGCCAGTGAGATGCCCCAGGGATTCATCTATGATGTCATCTACCAGGCTTATCAGAGGTGCAGTGAGTCGGACTTTGAGTTTGGCACCGAGTGCCTTCATCTGGCTCTGCAGTACTGTGGCACCAATGCCAAGCTCATCGAGGGCCCGCCAACCCTGTGGAAGGTGACCTACAAACGAGATCTGGCTGCAGCAGAGTCCGTTGTCAAAGAGACTCTCTCCCAGTCGGCCTGTGTTGTCACAGGTGGCTCTGCACAGGCTACAGAGCTGGCCAACGCTCTGCAGAGGAGCATGAGCGCTTTGGACATGGAGGTGGATGTGATCTCAGACTTGATGGGAGACGATGCCAAATCTCTGTCAAAAGAGTGGAACTTTATTCGAGTTTCTGTCAACAGTTCTTGCTTTTCTGAAGTTGGAAAAATGCTGAGTGCATTGGAGGAGGCAGACCGAGCACTCCTGCATCCAGTGGTCATTATTTGGGTTTATTTGAACGTGTCGGAGGACGGTTTGTCCGCCAGCGAGCCGATGGGAGGAGAGCCGGCGGCCATGATGGAGCTCGCCACAGGAGCCAAGCTCGGAAATATTTTAGTCTATGGCATCCAGCTTCATCACTCAAAGGAAGCTACACTTTGGGGGCGGTCAGTGGAGAAGGTGGCCCAGATGTCATGTGCTCTGATCCGGGACAGAAGCCCTGCCCTTACAGGACAGCTGCTCCAGGCGTGAGCCAACCCGGAAGAGCAGATCACTTTGTACAGCCTCGCCTCAGACCACCTTTATCACTACCCACCTACGGATTGGCCACAGGGTGTGTGTTTGAGAAACACTCCAAGCCTTCAAACTCTGTATGTCGTGAACTGCACTAGAAAAAGGAACAGTGTGATGGATAGGGAAGAGTTTAACATGAGACAGGGGTGTGTATGGAGACAGTTCGctatgcaagtgtgtgtgactgtctatAGCCCTATGGTCTGAGACTTCAAACAGTACTGTGTTTCATTCACATGaataaatactacagtttactatagaatactacagtacttactatataatTGTGTAGTAAACTCTAtaatatactacacactgtagtatccttCGATCATGTGTAGTCCTTACTATAGAATGCTGTAGTATgcagtagaatactatagtaaatactacagtaatgtcagcaaaaacactaTATTAAATACTACAATATTTAATTGGCATATACCGTGACCATTACCCtcccccatatcccaatttgtgccacctATAATTGTGTgtccctacaggttatagaaaagagcagaagctctgaactatccgttcagaccccagtcctacctacctacaggctATGGAAAATTAGCTCTCTTAGTGTTTCCCCAATAGATAAAGGAAAAAAGCCTCCACTTCTATGTTAAAGATAATAAAAcaagaatactatagtaaatactacagtaatgtctgcaaaaacactacagtaaatactattgtaaagtacagtctgcaaaaacactacagtaaatactacaatcTTCAAAAACACTTGcattaattactatagtatatactacacTTTTTCTTTTATGACGGTCtttatactatagttaactgtaaatgCTACAGGTTACTATAGTAAacacagtctgcaaaaacactacacttAATACTATAGTATATATACCATAGCATACTATAGTTTTTTAAAATGTGGGATGGTCTCTAGATCACTGGATAAAGGTGCTgctgaatggaggagaggagttgaCATCTACTGTATACATGTGTGATTTTTGTACTGCCATGTTTGAGTGGAGGTATAAAATGTTTGCTTTCATTAAAA
>XM_021560376.2
GGGGCTTCCTTGACAGCGCGCATGTGCAGCACTGTGGCTACAATGTAGCAGGATACAAATCGAATCAATCACTGGTCTACGCGACTCCGCCCATAAAGGAATGAATGAAACTGTATATGGGGATACCGATAGGACGTATTCGTGACCTCAGATGTTAGTCCGTTTTAACTTCAAATCACTCAATTGCCCTGAAGCACGTAAAAGGATACGGGCGACATGGACAGGCCTGTTGAACCAGGACATTTCTCAGCATGCGAAGCCCGGTTGGACAAGCACATTGCGGGACGTTGCAGCGTGGATTTCCCGGTAGCTGTGGTTCTTCCAGCCGGTGGCAGTGGAGAAAGAACCGGGCTACTGACACCCAAACAGTTCTGCACGTTTCTCAACAGACCTCTGATAAGCTACACAATTCAAACTTTCGAGAGAGTGCCATGGATCCAAAGCATCGTTGTGGTGGTTGCCAAGGAGAGCTTAGATTTGATGATGGACATTATCCATCGCTTCCACCACAGAAATGTCCTAGTGGTACATGGTGGATCTACTCGCCACAGATCTATCTTTAATGGGGTCCGAGCCCTCAGTGAGGGAGAGGGTGGTACGGACCGCGTCAAACCAAAGGTGGTCATCATCCATGATGCAGTGCGGCCCTTTGTGGAAGAGGACTTCCTCCTCAAGATAACAATGGCTGCCAAAGAACAAGGGGCTGCTGGGGCTATCCGACCTCTGGTTTCCACAGTGATTGCTACCACATTGGAGGGCTACCTGGACCATTCTCTGGAGAGAGCCATGTACAGAGCCAGTGAGATGCCCCAGGGATTCATCTATGATGTCATCTACCAGGCTTATCAGAGGTGCAGTGAGTCGGACTTTGAGTTTGGCACCGAGTGCCTTCATCTGGCTCTGCAGTACTGTGGCACCAATGCCAAGCTCATCGAGGGCCCGCCAACCCTGTGGAAGGTGACCTACAAACGAGATCTGGCTGCAGCAGAGTCCGTTGTCAAAGAGACTCTCTCCCAGTCGGCCTGTGTTGTCACAGGTGGCTCTGCACAGGCTACAGAGCTGGCCAACGCTCTGCAGAGGAGCATGAGCGCTTTGGACATGGAGGTGGATGTGATCTCAGACTTGATGGGAGACGATGCCAAATCTCTGTCAAAAGAGTGGAACTTTATTCGAGTTTCTGTCAACAGTTCTTGCTTTTCTGAAGTTGGAAAAATGCTGAGTGCATTGGAGGAGGCAGACCGAGCACTCCTGCATCCAGTGGTCATTATTTGGGTTTATTTGAACGTGTCGGAGGACGGTTTGTCCGCCAGCGAGCCGATGGGAGGAGAGCCGGCGGCCATGATGGAGCTCGCCACAGGAGCCAAGCTCGGAAATATTTTAGTCTATGGCATCCAGCTTCATCACTCAAAGGATCCTcacagtgtctctctgtctgtatgtggaTGCTGCAGGAAGCTACACTTTGGGGGCGGTCAGTGGAGAAGGTGGCCCAGATGTCATGTGCTCTGATCCGGGACAGAAGCCCTGCCCTTACAGGACAGCTGCTCCAGGCGTGAGCCAACCCGGAAGAGCAGATCACTTTGTACAGCCTCGCCTCAGACCACCTTTATCACTACCCACCTACGGATTGGCCACAGGGTGTGTGTTTGAGAAACACTCCAAGCCTTCAAACTCTGTATGTCGTGAACTGCACTAGAAAAAGGAACAGTGTGATGGATAGGGAAGAGTTTAACATGAGACAGGGGTGTGTATGGAGACAGTTCGctatgcaagtgtgtgtgactgtctatAGCCCTATGGTCTGAGACTTCAAACAGTACTGTGTTTCATTCACATGaataaatactacagtttactatagaatactacagtacttactatataatTGTGTAGTAAACTCTAtaatatactacacactgtagtatccttCGATCATGTGTAGTCCTTACTATAGAATGCTGTAGTATgcagtagaatactatagtaaatactacagtaatgtcagcaaaaacactaTATTAAATACTACAATATTTAATTGGCATATACCGTGACCATTACCCtcccccatatcccaatttgtgccacctATAATTGTGTgtccctacaggttatagaaaagagcagaagctctgaactatccgttcagaccccagtcctacctacctacaggctATGGAAAATTAGCTCTCTTAGTGTTTCCCCAATAGATAAAGGAAAAAAGCCTCCACTTCTATGTTAAAGATAATAAAAcaagaatactatagtaaatactacagtaatgtctgcaaaaacactacagtaaatactattgtaaagtacagtctgcaaaaacactacagtaaatactacaatcTTCAAAAACACTTGcattaattactatagtatatactacacTTTTTCTTTTATGACGGTCtttatactatagttaactgtaaatgCTACAGGTTACTATAGTAAacacagtctgcaaaaacactacacttAATACTATAGTATATATACCATAGCATACTATAGTTTTTTAAAATGTGGGATGGTCTCTAGATCACTGGATAAAGGTGCTgctgaatggaggagaggagttgaCATCTACTGTATACATGTGTGATTTTTGTACTGCCATGTTTGAGTGGAGGTATAAAATGTTTGCTTTCATTAAAA

Function

symbol description
ispd D-ribitol-5-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

NR:

description
isoprenoid synthase domain-containing protein-like isoform X2

GO: NA

KEGG:

id description
K21031 ISPD; D-ribitol-5-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560368.2 False 2623 mRNA 0.46 10 34913696 34946214
XM_021560376.2 True 2664 mRNA 0.46 10 34913696 34946214

Neighbor

gene id symbol gene type direction distance location
meox2a meox2 coding downstream 18584 34881733 ~ 34895112 (-)
LOC110488219 agmo coding downstream 64482 34824933 ~ 34849214 (-)
dgkb dgkb coding downstream 98522 34762165 ~ 34815174 (-)
etv1 etv1 coding downstream 154551 34740495 ~ 34759145 (-)
LOC110534811 LOC106582196 coding downstream 236041 34646955 ~ 34677655 (-)
LOC110488240 LOC106582291 coding upstream 685 34946899 ~ 34949511 (-)
ankmy2a ankmy2 coding upstream 6847 34953061 ~ 34960249 (-)
LOC110488264 LOC106605214 coding upstream 20693 34966907 ~ 34982793 (-)
LOC110488299 LOC106582320 coding upstream 90257 35036471 ~ 35086561 (-)
LOC110488304 LOC106605219 coding upstream 140962 35087176 ~ 35095775 (-)
G135950 NA non-coding downstream 8612 34904844 ~ 34905084 (-)
G135850 NA non-coding downstream 35481 34877738 ~ 34878215 (-)
G135668 NA non-coding downstream 177662 34735621 ~ 34736034 (-)
G135522 NA non-coding downstream 312245 34600883 ~ 34601451 (-)
G135406 NA non-coding downstream 449108 34464322 ~ 34464588 (-)
G135980 NA non-coding upstream 5632 34951846 ~ 34952080 (-)
G135982 NA non-coding upstream 28151 34974365 ~ 34974590 (-)
G135983 NA non-coding upstream 37310 34983524 ~ 34984165 (-)
G136002 NA non-coding upstream 70500 35016714 ~ 35017195 (-)
G135575 NA other downstream 309218 34604215 ~ 34604478 (-)
G134668 NA other downstream 1047759 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1688594 33208500 ~ 33225125 (-)
G134102 NA other downstream 2125575 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 2162118 32738829 ~ 32756992 (-)
G136399 psmc4 other upstream 360153 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 728084 35674291 ~ 35700846 (-)
G137479 NA other upstream 1423790 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1687979 36634193 ~ 36639005 (-)
G138080 NA other upstream 1879652 36825792 ~ 36828397 (-)

Expression


Co-expression Network