LOC110488240 (LOC106582291)


Basic Information

Item Value
gene id LOC110488240
gene name LOC106582291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34946899 ~ 34949511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560389.2
GAGCGGTTGCCAAAACAAGACTCGGacaggcctatataaaaacaAGCTCAGAACGTAGTATCTCTGCCGCAGACATCAGAGGCACAGAATCAATTTACATGACACGGGATCTGCTTATTCCCTACCTCCCCAGAAGCAATATGCACTTGAGCGCATGCAAGTCGTGCCACCTGCTATTCTTGTTTTGTATTCTTGTGAGGAGTTGCCAGGCGTTCAAGAATGATGCTACGGAGATCCTATACTCGCACGTGGGTACTCCTGTGCAGGATGCCCCGAGCAATGTCTCTTTAAATCGGGCAAGAAACGGCGGGAGAGGCGCGGGAAATACTGCTGGGAACGATAGAGTTGACCAGAGAAGCCAAGTTGGTTGTAGAGAGCTGAGGTCCACCAAGTACATCTCTGATGGCCAATGCACAAGCATCAACCCCATAAAGGAGCTAGTATGTGCTGGTGAGTGCCTCCCCGCTCAGATGCTCCCCAACTGGATCGGCGGCGGCTACGGCAGAAAGTTCTGGAGTCGGAGGAACAGTCAGGACTGGCGCTGCGTCAACGACAAGACGCGCACCCAACGCATCCAGCTGCAGTGTCAGGACGGCAGCACAAGAACGTACAAAATCACTGTGGTCACCTCGTGCAAGTGTAAGAGGTACTCCCGGCAACACAACGAGTCGAGCCATATGAAGTTTGAGGAGCCTGCCTTGCCTCAGCCCCAGCATCTCCACAAGCACAAAGCCAAAGCCAAAAGGAGGCTAGGGAAGATCAAGCTAAATGAGAATTGGCATGAAGCAGAGCCCTAAGGCAGGACTGCAGAATGCCTCAGTGACTGTGGTCTTGGATTATCTTTTATTGGGACTGGCTTGTTATGAGGAGGACCACTGAAAGTGACTTTGTAAAAGCGAATGGCATTGGTTGCTTGCTACATCTGAGGACCAATGAGCACCATTGACTCATTAGCTAATAAGATGAAATGAACCTAAATGGGGTCATCATGACCAATAGAACTGTCTGGAACTTTAAGATAATTCGCATCATTCAAGTTCTTGTATGACAATGTAAACCTGCTCTTCACTCCCTTATACAAACACAGTTTTACAGCCAATATAATGTAAAAAAGTAAGCTCTGCATGAAAAGGGGTTTCCCATCACAAAAGCACCACAAATACACAATGTAAATATGTGTACATATATAGTATGATATCACATGTCCTCTGAAGTATGGTAACATATGTATAAACGTTTTCTATAAGATGTATATGATGTAATATATATGTTGTATTGCTATTCATTTGATAAACCTTTTTAACATGCATCGCACACATTTAGCAAGAAGCTGTCATTGCTCATATtttcatttgaaaaaaaaaagaataaatgttaaaaaaaatgtcaC

Function

NR:

description
sclerostin domain-containing protein 1-like

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560389.2 True 1390 mRNA 0.45 2 34946899 34949511

Neighbor

gene id symbol gene type direction distance location
crppa ispd coding downstream 685 34913696 ~ 34946214 (-)
meox2a meox2 coding downstream 51787 34881733 ~ 34895112 (-)
LOC110488219 agmo coding downstream 97685 34824933 ~ 34849214 (-)
dgkb dgkb coding downstream 131725 34762165 ~ 34815174 (-)
etv1 etv1 coding downstream 187754 34740495 ~ 34759145 (-)
ankmy2a ankmy2 coding upstream 3550 34953061 ~ 34960249 (-)
LOC110488264 LOC106605214 coding upstream 17396 34966907 ~ 34982793 (-)
LOC110488299 LOC106582320 coding upstream 86960 35036471 ~ 35086561 (-)
LOC110488304 LOC106605219 coding upstream 137665 35087176 ~ 35095775 (-)
LOC110488311 mgat1 coding upstream 147003 35096514 ~ 35099521 (-)
G135950 NA non-coding downstream 41815 34904844 ~ 34905084 (-)
G135850 NA non-coding downstream 68684 34877738 ~ 34878215 (-)
G135668 NA non-coding downstream 210865 34735621 ~ 34736034 (-)
G135522 NA non-coding downstream 345448 34600883 ~ 34601451 (-)
G135406 NA non-coding downstream 482311 34464322 ~ 34464588 (-)
G135980 NA non-coding upstream 2335 34951846 ~ 34952080 (-)
G135982 NA non-coding upstream 24854 34974365 ~ 34974590 (-)
G135983 NA non-coding upstream 34013 34983524 ~ 34984165 (-)
G136002 NA non-coding upstream 67203 35016714 ~ 35017195 (-)
G135575 NA other downstream 342421 34604215 ~ 34604478 (-)
G134668 NA other downstream 1080962 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1721797 33208500 ~ 33225125 (-)
G134102 NA other downstream 2158778 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 2195321 32738829 ~ 32756992 (-)
G136399 psmc4 other upstream 356856 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 724787 35674291 ~ 35700846 (-)
G137479 NA other upstream 1420493 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1684682 36634193 ~ 36639005 (-)
G138080 NA other upstream 1876355 36825792 ~ 36828397 (-)

Expression


Co-expression Network