LOC110488257 (LOC106605215)


Basic Information

Item Value
gene id LOC110488257
gene name LOC106605215
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34961371 ~ 34964552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560410.2
CTGGACTGGGCCCTCCTTGCAATCCTACCCACCTGTAAAACGCCACAGGCACTGTTTGTCATTCTATGATAAGACTTAACTACTTTTCAACTCGGAGACGTTTGAGTCTGAGAATTGCTTTGTTCGAGAGGATAAAAAACGAATATCGACAATGGTTTGCGGAGGATTTGTTTGCACGAAGAATTCCCTATGCGCTCTGAACATACTTTATGTTATGGTGAGCTTGCTGCTGATTGGAGTAGCTGCTTGGGGGAAATGGTTTGGCCTGGTCTCAAGTTTTCGGGTGGTGGCTGGAATCATTGGTGTGGGCATCTTCCTGTTATTTGTGGCCTTCGTGGGCCTCTGTGGTGCCCTGAAGCACCACCAGGTCCTGCTGTTCTTTTACATGATTATCCTGTTCCTGGTGTTCATGGTTCAGCTGTCAGTGTCTGCCGCATGTCTGGCTATCAATAAAGAGCAGCAGAAAGAACTCCTAGAGGTGGGCTGGAACAAGTCCGAGGCCACTCAGAAGGATGTGGAGAAAAGTTTAAACTGCTGTGGCTTCTTCCATCCGAACTATAATGGCACCTGTGACGCGgactgtttctccAACCCATTATCCTGCAACCCTTGTGGTCCAATCATCCAAAGTCATGCTGAGGAGGTTTTACGCTTTGTGGGTGGGATTGGATGCTTCTTCAGCTTCACAGAGATCCTGGGAGTGTGGCTAACGCACAGATACAGAAATCAGAAGGATTCCCGTCCAAACTCTGGTGCATTTCTATAACTAGCTTGTTCATAAACTCAACTTTGCACTGTCATGCATTTGTATTTAGATCCTGTGTGACTTTTATCTTATGATTATTATATGTTTCCTATTTGGATATTTTCATTGCTGTGATAATATAACTATGCGTTGATATATCTAA

Function

NR:

description
tetraspanin-13-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560410.2 True 908 mRNA 0.45 6 34961371 34964552

Neighbor

gene id symbol gene type direction distance location
arl4aa LOC106605206 coding upstream 266167 34692610 ~ 34695204 (+)
si:dkey-30e9.6 LOC106605205 coding upstream 269085 34687955 ~ 34692286 (+)
vwde LOC106605201 coding upstream 314594 34644435 ~ 34646777 (+)
LOC110488146 tmem106b coding upstream 326397 34626361 ~ 34634974 (+)
LOC110488114 LOC106582161 coding upstream 496778 34432779 ~ 34464593 (+)
LOC110488281 apom coding downstream 20396 34984948 ~ 35000555 (+)
lt-b2 lt-b2 coding downstream 40028 35004580 ~ 35009706 (+)
tnf-alpha tnf-alpha coding downstream 58455 35023007 ~ 35025008 (+)
LOC110533739 ppt2a coding downstream 158251 35122803 ~ 35127514 (+)
LOC110488331 LOC106582353 coding downstream 163418 35127970 ~ 35141476 (+)
G135907 NA non-coding upstream 7951 34953079 ~ 34953420 (+)
G135914 NA non-coding upstream 8516 34952517 ~ 34952855 (+)
G135913 NA non-coding upstream 8860 34952139 ~ 34952511 (+)
G135873 NA non-coding upstream 46480 34913726 ~ 34914891 (+)
G135865 NA non-coding upstream 59591 34901560 ~ 34901780 (+)
G135919 LOC106605214 non-coding downstream 9056 34973608 ~ 34973832 (+)
G136015 NA non-coding downstream 62634 35027186 ~ 35027532 (+)
G136018 NA non-coding downstream 69353 35033905 ~ 35034771 (+)
G136019 NA non-coding downstream 70467 35035019 ~ 35035261 (+)
G136020 LOC106605218 non-coding downstream 71918 35036470 ~ 35038923 (+)
G134735 LOC100136012 other upstream 998713 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 1146888 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 1464086 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1791993 33167438 ~ 33169378 (+)
G135916 NA other downstream 7088 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 7897 34972449 ~ 34972801 (+)
lypc LOC106584559 other downstream 187208 35151760 ~ 35153650 (+)
LOC110488391 LOC106582385 other downstream 216127 35180650 ~ 35184002 (+)

Expression


Co-expression Network