Item | Value |
---|---|
gene id | LOC110488281 |
gene name | apom |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048566.1 |
NCBI id | CM023220.2 |
chromosome length | 103806877 |
location | 34984948 ~ 35000555 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
apom | Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in liver. |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XR_002468376.2 | False | 1573 | mRNA | 0.40 | 6 | 34984948 | 34997219 |
XR_002468377.2 | False | 1460 | mRNA | 0.41 | 7 | 34984948 | 34997219 |
XR_002468378.2 | False | 1055 | mRNA | 0.43 | 7 | 34984948 | 34997219 |
XR_002468380.2 | False | 942 | mRNA | 0.44 | 8 | 34984948 | 34997219 |
XR_005036519.1 | False | 1502 | mRNA | 0.40 | 5 | 34984948 | 34997219 |
XR_002468381.2 | False | 2588 | mRNA | 0.42 | 7 | 34984948 | 34999985 |
XR_005036520.1 | False | 2070 | mRNA | 0.44 | 8 | 34984948 | 34999985 |
TU156464 | False | 1126 | TUCP | 0.43 | 6 | 34984972 | 34996796 |
TU156467 | True | 2136 | TUCP | 0.48 | 2 | 34998396 | 35000555 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110488257 | LOC106605215 | coding | upstream | 20396 | 34961371 ~ 34964552 (+) |
arl4aa | LOC106605206 | coding | upstream | 289744 | 34692610 ~ 34695204 (+) |
si:dkey-30e9.6 | LOC106605205 | coding | upstream | 292662 | 34687955 ~ 34692286 (+) |
vwde | LOC106605201 | coding | upstream | 338171 | 34644435 ~ 34646777 (+) |
LOC110488146 | tmem106b | coding | upstream | 349974 | 34626361 ~ 34634974 (+) |
lt-b2 | lt-b2 | coding | downstream | 4595 | 35004580 ~ 35009706 (+) |
tnf-alpha | tnf-alpha | coding | downstream | 23022 | 35023007 ~ 35025008 (+) |
LOC110533739 | ppt2a | coding | downstream | 122818 | 35122803 ~ 35127514 (+) |
LOC110488331 | LOC106582353 | coding | downstream | 127985 | 35127970 ~ 35141476 (+) |
LOC110488356 | ccdc105 | coding | downstream | 150526 | 35150511 ~ 35151707 (+) |
G135919 | LOC106605214 | non-coding | upstream | 11116 | 34973608 ~ 34973832 (+) |
G135907 | NA | non-coding | upstream | 31528 | 34953079 ~ 34953420 (+) |
G135914 | NA | non-coding | upstream | 32093 | 34952517 ~ 34952855 (+) |
G135913 | NA | non-coding | upstream | 32437 | 34952139 ~ 34952511 (+) |
G135873 | NA | non-coding | upstream | 70057 | 34913726 ~ 34914891 (+) |
G136015 | NA | non-coding | downstream | 27201 | 35027186 ~ 35027532 (+) |
G136018 | NA | non-coding | downstream | 33920 | 35033905 ~ 35034771 (+) |
G136019 | NA | non-coding | downstream | 35034 | 35035019 ~ 35035261 (+) |
G136020 | LOC106605218 | non-coding | downstream | 36485 | 35036470 ~ 35038923 (+) |
G136021 | LOC106582320 | non-coding | downstream | 42327 | 35042312 ~ 35048954 (+) |
G135920 | LOC106605214 | other | upstream | 12147 | 34972449 ~ 34972801 (+) |
G135916 | NA | other | upstream | 13017 | 34971640 ~ 34971931 (+) |
G134735 | LOC100136012 | other | upstream | 1022290 | 33962417 ~ 33962658 (+) |
G133760 | LOC106605274 | other | upstream | 1170465 | 33814033 ~ 33814483 (+) |
lypc | LOC106584559 | other | downstream | 151775 | 35151760 ~ 35153650 (+) |
LOC110488391 | LOC106582385 | other | downstream | 180694 | 35180650 ~ 35184002 (+) |
LOC110488639 | LOC106605005 | other | downstream | 785706 | 35785691 ~ 35788114 (+) |
LOC100653444 | LOC106584591 | other | downstream | 855164 | 35855149 ~ 35865269 (+) |
G136994 | NA | other | downstream | 982847 | 35982832 ~ 36037741 (+) |