lt-b2 (lt-b2)


Basic Information

Item Value
gene id lt-b2
gene name lt-b2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35004580 ~ 35009706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124425.1
TTTGTGGTACGTGTGTGTTTCCCAGAGGATGAAGAGCCAACAGCACACCTCCAGATACCTGCTGCTACATGTGTGGTGCGGGTTTCTCACAGTCGCTATGGGGATTATGGTCGCAGTTCTCACAACAGTGCAAATAAACTCATCTGACAAGAGTCATTTACCTGAATCAAAGGAGGAAAACCAGCCCCCTATAAATGGCAGTTTTTTGGCTCAATTGAATTCATCAAAGGCTCCCCGTCCCTCTTATATCCAGCTGACCATGGGAACATTATCTTGGGAGAATGACCATGATGCCACCGTCTGTGGCTCTTGTTCCCTCGTCCTCCGCGACAACTCTGTCTACATCACATCTGAAGGCTTCTACTACATCTATGTCCAAGTCACCTTCACTAGGCACAccgggggagaggagaagaggaaggtgaCTCTGTTCAAAAATGGCATTCAGAATAAGACCCAACGAAGGAGACTGAGTGAAGCCGTGTATcacggagagaaagagggaactgTATTCATGTCCAGGATGGTTAAGCTCCAACAAGGTAACAGTCTCAGCCTTGAGATAACATCCAAGAATAATAGTTTTAGGTATGGGGTAGAGAATACCCACTGGGGGGCATATCAGCTCCCCCCATATTGAGCCAACAGACATTTGTATTGAGACTTAGTTCAAGATTGAACCAAAAAAAGCTGTTAAAACATAGTTTTAAAAAAGTGTGTGGTAGTTACTAAACTGAATTTATTTTGTGGAAACTGTAACTGTTATGCATTGTATGTTTTGCTGAACAGATTTGATTACATAATGAGATAACAGAATA

Function

NR:

description
lymphotoxin beta 2

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124425.1 True 818 mRNA 0.44 5 35004580 35009706

Neighbor

gene id symbol gene type direction distance location
LOC110488281 apom coding upstream 4595 34984948 ~ 35000555 (+)
LOC110488257 LOC106605215 coding upstream 40028 34961371 ~ 34964552 (+)
arl4aa LOC106605206 coding upstream 309376 34692610 ~ 34695204 (+)
si:dkey-30e9.6 LOC106605205 coding upstream 312294 34687955 ~ 34692286 (+)
vwde LOC106605201 coding upstream 357803 34644435 ~ 34646777 (+)
tnf-alpha tnf-alpha coding downstream 13301 35023007 ~ 35025008 (+)
LOC110533739 ppt2a coding downstream 113097 35122803 ~ 35127514 (+)
LOC110488331 LOC106582353 coding downstream 118264 35127970 ~ 35141476 (+)
LOC110488356 ccdc105 coding downstream 140805 35150511 ~ 35151707 (+)
lypc LOC106584559 coding downstream 142095 35151760 ~ 35153650 (+)
G135919 LOC106605214 non-coding upstream 30748 34973608 ~ 34973832 (+)
G135907 NA non-coding upstream 51160 34953079 ~ 34953420 (+)
G135914 NA non-coding upstream 51725 34952517 ~ 34952855 (+)
G135913 NA non-coding upstream 52069 34952139 ~ 34952511 (+)
G135873 NA non-coding upstream 89689 34913726 ~ 34914891 (+)
G136015 NA non-coding downstream 17480 35027186 ~ 35027532 (+)
G136018 NA non-coding downstream 24199 35033905 ~ 35034771 (+)
G136019 NA non-coding downstream 25313 35035019 ~ 35035261 (+)
G136020 LOC106605218 non-coding downstream 26764 35036470 ~ 35038923 (+)
G136021 LOC106582320 non-coding downstream 32606 35042312 ~ 35048954 (+)
G135920 LOC106605214 other upstream 31779 34972449 ~ 34972801 (+)
G135916 NA other upstream 32649 34971640 ~ 34971931 (+)
G134735 LOC100136012 other upstream 1041922 33962417 ~ 33962658 (+)
LOC110488391 LOC106582385 other downstream 170973 35180650 ~ 35184002 (+)
LOC110488639 LOC106605005 other downstream 775985 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 845443 35855149 ~ 35865269 (+)
G136994 NA other downstream 973126 35982832 ~ 36037741 (+)

Expression


Co-expression Network