tnf-alpha (tnf-alpha)


Basic Information

Item Value
gene id tnf-alpha
gene name tnf-alpha
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35023007 ~ 35025008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124357.1
GCAAAACACAGGACACCTATCAAGCTACAACTCTGTCAAATCAAAAAAAGATATTTAGGAGATATTCGGGCAAATATTCAGTCGCTAGACTTTTTCACTGCCACCAAGAGCCAAGAGTTTGAACCTTGTTCAACAGCAGTATGGAGGGGTATGCGATGACACCTGAAGACATGGAGAGGGGCCCTGTGTACAACACAACGGTGACAGCTGTTGCTGAGGGAAAGGCCTCCAGAGGTTGGCTATGGAGGCTGTGTGGGGTCCTCTTAATAGCAGTTCTATGTGCGGCAGCAGCCCTACTCTTTGCTTGGTGTCAGCATGGAAGACCGTCAACGATGCAGGATGAAATGGAGCCTCAACTGGAGATACTCATTGGTGCAAAAGATACCCACCATACATTGAAGCAGATTGCCGGCAATGCAAAAGCAGCCATCCATTTAGAGGGTGAATACAATCCTAATCTTTCCGCTGACACCGTGCAGTGGAGAAAGGATGACGGCCAGGCTTTTTCCCAGGGCGGGTTCGAGCTACAGGGGAACCAAATCCTCATCCCACACACTGGGCTCTTCTTCGTTTACAGCCAGGCTTCGTTTAGGGTCAAGTGCAATAGCCCGGGCGAGCATACCACTCCTCTGAGTCACATTATTTGGCGCTATTCGGACTCCATCGGGGTTAATGCTAATCTTCTTAGCGGGGTAAGGTCAGTTTGTCAACAAAACTACGGTGATGCTGAGTCCAAAATTGGCGAAGGCTGGTACAATGCAGTTTACCTTGGTGCGGTGTTTCAGCTGAATGAAGGGGACAAACTGTGGACTGAGACCAATCGACTGACCGACGTGGAGCCTGAGCAGGGCAAGAACTTCTTTGGTGTGTTTGCACtgtgatgagagagaggcaggccagAGATGAAtatttgttaaaacagttttatGTTAAAACTCTTATTTTAGTGTTGCAATTTTATGGTAACTGAGCCATCTCAAAGGAGATTGGTCTAATCTTAATGGTTATTTTTGTAAACTGCAACAGTTTGAGAAATGATTATTGTTTGTCCACACATGATTGTCCATTCTCTCTATTGTAGATTTTGCACCAAATAATATTATGACTTCGGGTTATTTATATTAACTTAAAAAACAGGATATTTACTATTTATTTGAAAATACAATAGGCTACTGTGGAGTACTGTAGTATAAGTTATCTTGATTCACATAAGTCTAGCAGTAGCCTATACTAGGCCTATCAGAATACAGTACTACAATATTAAGTTATTTTATTTAATGTACTGATGTACTAATGTTTATTTAAATGTGATTGTgttgtattttatttgtcacatattcAGAGTGCTTGAATCAACTAATAAATTCCAAATCTTCTCAA

Function

NR:

description
tumor necrosis factor alpha

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
K03156 TNF, TNFA; tumor necrosis factor superfamily, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124357.1 True 1380 mRNA 0.42 4 35023007 35025008

Neighbor

gene id symbol gene type direction distance location
lt-b2 lt-b2 coding upstream 13301 35004580 ~ 35009706 (+)
LOC110488281 apom coding upstream 23022 34984948 ~ 35000555 (+)
LOC110488257 LOC106605215 coding upstream 58455 34961371 ~ 34964552 (+)
arl4aa LOC106605206 coding upstream 327803 34692610 ~ 34695204 (+)
si:dkey-30e9.6 LOC106605205 coding upstream 330721 34687955 ~ 34692286 (+)
LOC110533739 ppt2a coding downstream 97795 35122803 ~ 35127514 (+)
LOC110488331 LOC106582353 coding downstream 102962 35127970 ~ 35141476 (+)
LOC110488356 ccdc105 coding downstream 125503 35150511 ~ 35151707 (+)
lypc LOC106584559 coding downstream 126793 35151760 ~ 35153650 (+)
LOC110488375 LOC106605227 coding downstream 147566 35172574 ~ 35180466 (+)
G135919 LOC106605214 non-coding upstream 49175 34973608 ~ 34973832 (+)
G135907 NA non-coding upstream 69587 34953079 ~ 34953420 (+)
G135914 NA non-coding upstream 70152 34952517 ~ 34952855 (+)
G135913 NA non-coding upstream 70496 34952139 ~ 34952511 (+)
G135873 NA non-coding upstream 108116 34913726 ~ 34914891 (+)
G136015 NA non-coding downstream 2178 35027186 ~ 35027532 (+)
G136018 NA non-coding downstream 8897 35033905 ~ 35034771 (+)
G136019 NA non-coding downstream 10011 35035019 ~ 35035261 (+)
G136020 LOC106605218 non-coding downstream 11462 35036470 ~ 35038923 (+)
G136021 LOC106582320 non-coding downstream 17304 35042312 ~ 35048954 (+)
G135920 LOC106605214 other upstream 50206 34972449 ~ 34972801 (+)
G135916 NA other upstream 51076 34971640 ~ 34971931 (+)
G134735 LOC100136012 other upstream 1060349 33962417 ~ 33962658 (+)
LOC110488391 LOC106582385 other downstream 155671 35180650 ~ 35184002 (+)
LOC110488639 LOC106605005 other downstream 760683 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 830141 35855149 ~ 35865269 (+)
G136994 NA other downstream 957824 35982832 ~ 36037741 (+)

Expression


Co-expression Network