LOC110488299 (LOC106582320)


Basic Information

Item Value
gene id LOC110488299
gene name LOC106582320
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35036471 ~ 35086561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560477.2
GAATTAGCTGGAGATTGTAGGGAGAGAGCAAAAGGGAGGGAGTGTGAGGATTCGGTGTTCGTCGTACATGGGGAAGAGATTGTACATAGTGcgtgtatttatatgtacattttTCGTTTCCGACTTTTCACCATACGAAATTGAAGTAGATGGCAATAGACTGATTAATACGGTTGTTTTTGACATTCAATGAATACGCTATGCACGGGGACCGGGTTGCCATTTATAGCCATACAAACATAGCCATACAATACGTTGCAACGAAACACATTTTACCAAATAATTCGACATTTGGGTGATCTCAAACGAGTCGCAACCGATGTACATACGGTCATCTTGACTGAGCGCGTCGAAAGTATTTatcCAGTAATGGCACAGCTATTGTTTCTTATAATTCTGTATGCTCTGCCATCTCTTGTTGTGGCCATACATAATTCAACAACTGGAGGCTGTGCCATCATCCGTCCTCCCAGAGATGGAGGCATCCGCTACAGAGGCCTGACACAAGAACAGATTCGCAATGTGCAGATCCTACCAGTGGACTACGAGATAGAGTACATCTGCAGGGGGAACAGGGTCATAGTGGGCCCTAAGGTCAGGAAGTGCCTTCCCAACGGCACATGGACTGATATCACACAGCACAGCAGGTGTCTGCTGCTGTGCCCTCGTGTGTGGACATCCCTGGAGAATGGGAGGGTGGCGCTGAAGCCCCCTGGGCCACCGGTGGAGGGCACCGTGCTGCACTACAGCTGCCATGCTGGCTTCATGCTGGAGGGCAGGAACATCACACACTGCACCAAGCTGGGCAAGTGGGACTCACCCAAACCGGTCTGCCTCTATGACAGAAACTACAAAGGCAAGAAGAAACTCTACATCGGAGCTCTCTTCCCCATGAGCGGCGGTTGGCCGGGCGGCCAAGCATGTCTCCCCTCTGCGCAGATGGCTTTGGATCTGGTAAACAACCGGACGGATATTCTGCCGGATTACGAACTGGAGCTGATATACTATGACAGTATGtgtGACCCAGGGGAGTCCACCAAGTTGCTCTATGATCTGCTCTACACAGAGCCCATCAAGACAGTCCTGATGCCCGGCTGCAGCTCCGTATCCACACTGGTAGCAGAGGCTGCTCGCATGTGGAACCTCATAGTGctgTCCTATGGCTCCAGCTCTCCAGCCTTGTCCAACAGGAACCGCTTCCCCACCTTCTTCCGCACCCACCCCTCGGCCACCCTCCACAACCCCACCAGGGTACGCCTCTTCCAGAAGTGGAAGTGGACAAAGATCGCTACCATCCAGCAGACCACAGAGGTCTTCACTTCGaCTCTGGATGATCTGGAGCAGAGGGTGAAGGAGGCTGGGATTGAGATCAGTGTGAGACAGAGCTTCCTCACCGACCCGGCTGTCGCTGTCAAGAACCTCAAGCGTCAGGATGCCAGAATCATTGTGGGGCTCTTCTATGAGACGGAAGCCAGGAAAGTGTTTTGCGAGgTATTTAAGGAGAAACTGTATGGGAAGAAATATGTGTGGTTTCTGATTGGTTGGTATGCTGACAACTGGTTCAAGATCAAAGACCCGTCCatcaactgcaccatcgagaacatgaCAGAGGCGGTGGAGGGCCACGTTACCACGGAGATCGTCATGCTCAACCCCGAGACCGTCCGCGGAGCCTCCAACCTGACCTCTCAGGAGTTCCTGGGGGCGTTGATGAACCGGCTGGGGGGTAAGAACCCGGAAGAGACAGGGGGCTTCCAGGAGGCCCCTCTGGCCTACGACGCTGTCTGGGCCCTGGCCCTGGCCCTCAACAAGACTGTGGCCCCTCTGAAGGCCAAAGGCCGCAGGCTGGAGGACTTCAACTACAACAACCatgacatcacagcagagatCTACCGCGCCCTCAACACCAGCTCATTTGAAGGCGTGTCTGGCCATGTGGTGTTTGATGCCCAGGGTTCCAGGATGGCGATGACCCTTATTGAGCAACTGCAAGGAGGCAGTTATAAGAAGATTGGATACTACGACAGCTCTCAGAAGAATCTCTCCTGGTTCGGCAACGATGTGTGGATAGgtgCCGGGCCCCCGGCTGACTCGACGATAGTCATTGAGGAGTTTAGGTACCTCTCTCAGAAGCTGTTTGCTGCTGTGTCTGTCTTCGCTGGTCTGGGCATCCTGCTGGGCATCGTCTGTCTGACCTTCAACATCTACAACAGCAACGTCCGGTACATCCAGAACTCCCAGCCCTACCTGAACAACATGACGGCAGTGGGTTGTATGATGGCCCTGGCTGCTGTGTTTCCCCTGGGGATCGACGGACACCACATCCACAGGTCCCAGTTCCCTGTGGTCTGTCAGTTCCGTCTGTGGCTGCTCGGCCTGGGCTTCAGTCTGGCATATGGCAGCATGTTCACTAAGATTTGGTGGGTACACAATCTCTTCAcaaagaaggaggagaagaaggagaagaggaagCACCTGGAGCCATGGAAACTCTATGCAACAGTTGGAGTGTTACTAGCCATAGACATCCTGTCACTCATGATTTGGCAGATTGTGGATCCTTTACACATCACAGTGGAGAAGTTCACTAGGGAGGCCCCTAAAGGAGACTTGGATGTCCTGATTCAGCCCCTCCTGGAGCACTGCACCTCAGAGAAGATGAACACATGGCTCGgtgtagtgTATGGCTACAAGGGACTACTGCTGTTGCTGGGGATATTTCTAGCCTACGAGACCAAGTCTGTTTCCACGGAGAAGATCAATGACCATCGAGCCGTGGGGATGGCTATTTACAACGTGGCTGTGTTGTGCATGATCACGGCTCCCGTCACTATGATCCTCACGTCACAGCAGGACGCTTCCTTTGCCTTTGCCGCTCTGGCCATAGTGTTCTCTGTCTACATCACGCTGGTGGTGCTCTTTGTGCCCAAGatGCGCAGGCTGATTACGCGTGGTGAGTGGCAGTCGGAGCAGCAGGACACGCTGAAGACCGGCTCGTCCACCAACAACAACGACGAGGAGAAGTCTcgccagctggagagagagaaccGTGAGCTGCAGAAGATCATACAGGAGAAAGAGCAGAGGGTATCGGAGCTCCGCAACCAGCTGGTTGAGAGACAGGCCCTGCGCAACCGACGACGGCCCTCATCCGGCACCAATCAGAACCACAGCAACCCGTCCCCGCCCTCTTCCCAGCCAGACCCCAAGTCTCTCCTGCCTCCACCCGGTTACCCCAACCCCGCGTCGGACAATCACTCCTCCTTACCCCCCTCCTTCTCCAACTCCTCCAACCTGTACCAGGCGGACAGCAAGATAAGTCGCAACCACTGTCACAACAGCCAGATCCCCCTGCTCTACAAGtgaagggggtggggggagggctGGAAGAGCGCAGAGCACATGGAGGAACGAACACACATGGAGGCACTGTGACTTTCACTTGTTATGGAAAAAGAGCACAAGCTACTGACATTGACAGAGTGAGTGGAGGCACACGACGGCAGAGGACTTTTCCATTCACTACAGGCTGCTGTGAGGCGAGTCACCCGGGGTAACACCAGTCTTTCTCACAGTCAATCTCACTGTGGGGACCTGAAGCACTTATGACTAGTAATATGAGTTATTGAATAAGAGACGAGCACATCCCAGAGTAACCCTCAGTCTACTTGTGGAGACAAGAAAATGGACAGATCTCCCCTTTTCACTTCCCTTTGTTTGTTTTCTCGTTCTGTTGTGCAGATGTATCCAGGATCTCCGGGAGGActttgtgtactgtgtgtgtttgctccTTTTTGACTCCCGTCTCTATTTGTCTCTTTTTGACTCCCGTCTCTGCCTATTTGTCTTCTGTTTGTTGAAATAGCGAAGCACCTGGTAATTGATTAATATTGTTATTGCataatgtatgatatgttatgtcaTGGATTCAGTGTTGTGCCCTATATCTATTTAGTtcaatcgttttttttttgtgggggggctAAAGGGGTGGAAACTGTTCAAATGCAATTACAGTGGAAAAAACAGCACAGTTTCCCTGTGGATTCAATATCAAGACGCCATCTAAACTCAGTGTAAAGTCATCCTAACTGACAGTGAATTGCCAACATTATAGCCATATGCAGTAGAGGGTTTTGGAATGTGCACCCACATTTTGGGACAATAGCAAGAGATTTGTGGATGTTTTGCTGTATACATATTCAAGTACAGCTTTGTATCTTCAATCACATGTTTGCTGTTATATGCTCTTGAATAGATGAAACCCATTTGATAAGAAACGAGTGTAATGTGATATGTAACCTAATACATTTTCTATGGATCATCTTTTTGAACGTTTTCAATTGGACTTGTTATGACTTGATATGTTCCGGCGATTTGAACTTTCTTGGACACATCAGAGATATTCAAAGGTAGCTCAACCTCCTACAGATTTTAAACGCCATATGTATTAtgcatcagtcttccaagcctttttGATTTTCTTTGTCTTTAGGGGAAAACAGATTTTAGTGACAATCTGTATATAAATGTAAATGTGAGGGTACATGCCTGTCACCTGTCACCCGGTCTTATATTTGACGTTTCTTTCCGAATTGTCCCTCCAATTTTAGCTTTGTACAACCACATTTGTGAATGTGATGACGAAGAGTATATGTAAAGGATTCTGACATGCGTCTACGACAGTTAATATATATATGTACAATCTCATTCGTTAGCAATTCGTCCAAATGTATGAAGCAATGATATAACACAGCTTTATTGGCAAGTTACGCAAGTGACGATACTTTTCCAAATAGCATTATCTCATGTTGCACTATAGTTCAAGACGTAACAAGGTTTCAGGTCAGGATTTTGTTGACGTTCTAATGACATACTGTAGCTCAGGGTATAGGAAAGTGAGATATACAACCTCTCCATAGGAAGTTATTGGATGAAATAGTCCCTATTTATTAACTGTACATGGACGACATTGGGTAATATTGTTATATATGTATGTGAAGATTATTTAGAGAAATATACTCTTGCACATGtatgaatatacactgagtgtacaaaacattaggaacaccttcctactattgagGTTGcagccccttttgccctcaggacGGCCTCAAGTCGTCGGGGCACGGTCTCAAGCTGgggtgcctggcacctactaccacaccctgttcaaaggcactttgtcttgcccattcaccctctgaacggttcacatacacaatccatgtttcaatggtctccaggcttaaaaaaaaatccttctcctccccttcatctacactgattgaagtggattgaacaggtgacatcaataagggatcatagctttcacctggattcacttgttcagtctatgtcatggaaaaagcaggtattcttaatgttttgtacactctgtctATACAACTGGATTTTAAGATATTTGTATACACTATATTTACAATTTTAAATGTTGATATATTTCAGATTATATGTATTCAAATATATGGATAATCATAGTAAAATAAACCCATTGTTTTTCACTGAA
>XM_036946845.1
GAATTAGCTGGAGATTGTAGGGAGAGAGCAAAAGGGAGGGAGTGTGAGGATTCGGTGTTCGTCGTACATGGGGAAGAGATTGTACATAGTGcgtgtatttatatgtacattttTCGTTTCCGACTTTTCACCATACGAAATTGAAGTAGATGGCAATAGACTGATTAATACGGTTGTTTTTGACATTCAATGAATACGCTATGCACGGGGACCGGGTTGCCATTTATAGCCATACAAACATAGCCATACAATACGTTGCAACGAAACACATTTTACCAAATAATTCGACATTTGGGTGATCTCAAACGAGTCGCAACCGATGTACATACGGTCATCTTGACTGAGCGCGTCGAAAGTATTTttttttttctctctctccccagatcCAGTAATGGCACAGCTATTGTTTCTTATAATTCTGTATGCTCTGCCATCTCTTGTTGTGGCCATACATAATTCAACAACTGGAGGCTGTGCCATCATCCGTCCTCCCAGAGATGGAGGCATCCGCTACAGAGGCCTGACACAAGAACAGATTCGCAATGTGCAGATCCTACCAGTGGACTACGAGATAGAGTACATCTGCAGGGGGAACAGGGTCATAGTGGGCCCTAAGGTCAGGAAGTGCCTTCCCAACGGCACATGGACTGATATCACACAGCACAGCAGGTGTCTGCTGCTGTGCCCTCGTGTGTGGACATCCCTGGAGAATGGGAGGGTGGCGCTGAAGCCCCCTGGGCCACCGGTGGAGGGCACCGTGCTGCACTACAGCTGCCATGCTGGCTTCATGCTGGAGGGCAGGAACATCACACACTGCACCAAGCTGGGCAAGTGGGACTCACCCAAACCGGTCTGCCTCTATGACAGAAACTACAAAGGCAAGAAGAAACTCTACATCGGAGCTCTCTTCCCCATGAGCGGCGGTTGGCCGGGCGGCCAAGCATGTCTCCCCTCTGCGCAGATGGCTTTGGATCTGGTAAACAACCGGACGGATATTCTGCCGGATTACGAACTGGAGCTGATATACTATGACAGTATGtgtGACCCAGGGGAGTCCACCAAGTTGCTCTATGATCTGCTCTACACAGAGCCCATCAAGACAGTCCTGATGCCCGGCTGCAGCTCCGTATCCACACTGGTAGCAGAGGCTGCTCGCATGTGGAACCTCATAGTGctgTCCTATGGCTCCAGCTCTCCAGCCTTGTCCAACAGGAACCGCTTCCCCACCTTCTTCCGCACCCACCCCTCGGCCACCCTCCACAACCCCACCAGGGTACGCCTCTTCCAGAAGTGGAAGTGGACAAAGATCGCTACCATCCAGCAGACCACAGAGGTCTTCACTTCGaCTCTGGATGATCTGGAGCAGAGGGTGAAGGAGGCTGGGATTGAGATCAGTGTGAGACAGAGCTTCCTCACCGACCCGGCTGTCGCTGTCAAGAACCTCAAGCGTCAGGATGCCAGAATCATTGTGGGGCTCTTCTATGAGACGGAAGCCAGGAAAGTGTTTTGCGAGgTATTTAAGGAGAAACTGTATGGGAAGAAATATGTGTGGTTTCTGATTGGTTGGTATGCTGACAACTGGTTCAAGATCAAAGACCCGTCCatcaactgcaccatcgagaacatgaCAGAGGCGGTGGAGGGCCACGTTACCACGGAGATCGTCATGCTCAACCCCGAGACCGTCCGCGGAGCCTCCAACCTGACCTCTCAGGAGTTCCTGGGGGCGTTGATGAACCGGCTGGGGGGTAAGAACCCGGAAGAGACAGGGGGCTTCCAGGAGGCCCCTCTGGCCTACGACGCTGTCTGGGCCCTGGCCCTGGCCCTCAACAAGACTGTGGCCCCTCTGAAGGCCAAAGGCCGCAGGCTGGAGGACTTCAACTACAACAACCatgacatcacagcagagatCTACCGCGCCCTCAACACCAGCTCATTTGAAGGCGTGTCTGGCCATGTGGTGTTTGATGCCCAGGGTTCCAGGATGGCGATGACCCTTATTGAGCAACTGCAAGGAGGCAGTTATAAGAAGATTGGATACTACGACAGCTCTCAGAAGAATCTCTCCTGGTTCGGCAACGATGTGTGGATAGgtgCCGGGCCCCCGGCTGACTCGACGATAGTCATTGAGGAGTTTAGGTACCTCTCTCAGAAGCTGTTTGCTGCTGTGTCTGTCTTCGCTGGTCTGGGCATCCTGCTGGGCATCGTCTGTCTGACCTTCAACATCTACAACAGCAACGTCCGGTACATCCAGAACTCCCAGCCCTACCTGAACAACATGACGGCAGTGGGTTGTATGATGGCCCTGGCTGCTGTGTTTCCCCTGGGGATCGACGGACACCACATCCACAGGTCCCAGTTCCCTGTGGTCTGTCAGTTCCGTCTGTGGCTGCTCGGCCTGGGCTTCAGTCTGGCATATGGCAGCATGTTCACTAAGATTTGGTGGGTACACAATCTCTTCAcaaagaaggaggagaagaaggagaagaggaagCACCTGGAGCCATGGAAACTCTATGCAACAGTTGGAGTGTTACTAGCCATAGACATCCTGTCACTCATGATTTGGCAGATTGTGGATCCTTTACACATCACAGTGGAGAAGTTCACTAGGGAGGCCCCTAAAGGAGACTTGGATGTCCTGATTCAGCCCCTCCTGGAGCACTGCACCTCAGAGAAGATGAACACATGGCTCGgtgtagtgTATGGCTACAAGGGACTACTGCTGTTGCTGGGGATATTTCTAGCCTACGAGACCAAGTCTGTTTCCACGGAGAAGATCAATGACCATCGAGCCGTGGGGATGGCTATTTACAACGTGGCTGTGTTGTGCATGATCACGGCTCCCGTCACTATGATCCTCACGTCACAGCAGGACGCTTCCTTTGCCTTTGCCGCTCTGGCCATAGTGTTCTCTGTCTACATCACGCTGGTGGTGCTCTTTGTGCCCAAGatGCGCAGGCTGATTACGCGTGGTGAGTGGCAGTCGGAGCAGCAGGACACGCTGAAGACCGGCTCGTCCACCAACAACAACGACGAGGAGAAGTCTcgccagctggagagagagaaccGTGAGCTGCAGAAGATCATACAGGAGAAAGAGCAGAGGGTATCGGAGCTCCGCAACCAGCTGGTTGAGAGACAGGCCCTGCGCAACCGACGACGGCCCTCATCCGGCACCAATCAGAACCACAGCAACCCGTCCCCGCCCTCTTCCCAGCCAGACCCCAAGTCTCTCCTGCCTCCACCCGGTTACCCCAACCCCGCGTCGGACAATCACTCCTCCTTACCCCCCTCCTTCTCCAACTCCTCCAACCTGTACCAGGCGGACAGCAAGATAAGTCGCAACCACTGTCACAACAGCCAGATCCCCCTGCTCTACAAGtga

Function

NR:

description
gamma-aminobutyric acid type B receptor subunit 1-like

GO: NA

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560477.2 False 5533 mRNA 0.48 24 35036471 35086561
XM_036946845.1 True 3388 mRNA 0.54 24 35038638 35086561

Neighbor

gene id symbol gene type direction distance location
LOC110488264 LOC106605214 coding downstream 53678 34966907 ~ 34982793 (-)
ankmy2a ankmy2 coding downstream 76222 34953061 ~ 34960249 (-)
LOC110488240 LOC106582291 coding downstream 86960 34946899 ~ 34949511 (-)
crppa ispd coding downstream 90257 34913696 ~ 34946214 (-)
meox2a meox2 coding downstream 141359 34881733 ~ 34895112 (-)
LOC110488304 LOC106605219 coding upstream 615 35087176 ~ 35095775 (-)
LOC110488311 mgat1 coding upstream 9953 35096514 ~ 35099521 (-)
LOC110488316 LOC106605221 coding upstream 17307 35103868 ~ 35106886 (-)
LOC110534832 dhx16 coding upstream 21646 35108207 ~ 35122317 (-)
LOC110488360 LOC106605226 coding upstream 71922 35158483 ~ 35174193 (-)
G136002 NA non-coding downstream 19276 35016714 ~ 35017195 (-)
G135983 NA non-coding downstream 52306 34983524 ~ 34984165 (-)
G135982 NA non-coding downstream 61881 34974365 ~ 34974590 (-)
G135980 NA non-coding downstream 84391 34951846 ~ 34952080 (-)
G136280 NA non-coding upstream 13604 35100165 ~ 35100983 (-)
G136317 NA non-coding upstream 41229 35127790 ~ 35128022 (-)
G136318 NA non-coding upstream 53847 35140408 ~ 35141438 (-)
G136319 NA non-coding upstream 54989 35141550 ~ 35141729 (-)
G135575 NA other downstream 431993 34604215 ~ 34604478 (-)
G134668 NA other downstream 1170534 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1811369 33208500 ~ 33225125 (-)
G134102 NA other downstream 2248350 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 2284893 32738829 ~ 32756992 (-)
G136399 psmc4 other upstream 219806 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 587737 35674291 ~ 35700846 (-)
G137479 NA other upstream 1283443 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1547632 36634193 ~ 36639005 (-)
G138080 NA other upstream 1739305 36825792 ~ 36828397 (-)

Expression


Co-expression Network