LOC110488304 (LOC106605219)


Basic Information

Item Value
gene id LOC110488304
gene name LOC106605219
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35087176 ~ 35095775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560492.2
AAATGTTAACAGGCTGCCTGGGCAGGTTGGAGACTTCTAAAAGCAAGTCTGGCTACGGAACCTTTATGAGTTCAAACCTAAGATGAGGCATGGCTACGGAACCAATAAGAGTTCAAACCAAAGGACGAGGGAAGCGTTCTCTATTTACCTTTTGTTTTGCTAGCTAAGAACAGATCCGAGGTTAGCTAGCAAGCAaacagtggagggagagatggagagactacTGGTGATGAAAAAACATTATTTGTTGTCAATTAGATTTCATTTCAATGTCCATTATTTGCAGTCAATTtattttaaataatgttttttttcatGCAACGTAAGGTAGCTTTATagagctagctactgtactggtAGTATCGTCACGTCGTTAGTCTCCTGTGTTGTGGCTAAACGAGCGGGATTGAATGATAGTCTGGTTTTGCTGTCTCTCAAACTAGTTTTCCCCCTATGGTCCTAATCAAATTCTCACACATACAAAACGCAGTTAGTAACTGGCTAGAACACATAGCTAGTTGGCTAAAAAGAGAAGCAACTTTACCGTTatttggctagctaacgttagcttgctaactgGGCCTGGAATGGAGCCAGGTGATTTGCGTGTGAGCCCAGCCGGCTCCGGAGACCCCGAAGTGGGCGAATTGAGGGAAGAGACGCCTGGTGCGGATGCTGAGGTGAAGGGCGGGGAACCAAATGACAAGGAAATTAATGGAGATACAGCTGAAACGGTGCTAAAAGAGAAAGACACCTGCGAGGGAGAAGAGtgtacagagaaagagaagaacgAAGGTGAACTACACAGCCCATATGAAGAGGAATTGGATCCCAGAATTCAGGAGGAGTTGGAACACCTCAACGAGGCCAGTGTAAAAATCAACCAACTAGAACTGCACTTGGATGATGCCAGATCGGGTTATAGGAAGATCCTCACAGACTCAGCCAGAAAACTGAACGCCCACAGCTCCCAGCTTGGTACCTGCATCGAGAAGGCCAGGCCCTACTATGAGGCTCGTCGACTTGCCAAGGAGGCTCAACAGGAGACCCAGAAGGCGGCGCTGAGCTATGAGCGGGCCGTCTCCATGCACACGGCTGCCAGGGAGATGGTGTACGTGGCAGAGCAGGGCCTCATGGCCGATGGCAGGAACACCCTGGACCCCACCTGGCAGGAGATGCTCAACCATGCTACCTCCAAGGTGAACGAGGCAGAGGAGGAGCGCCTACGCAGCGAACGGGAGCACATGCGTGTCACCCACTCTTGTCAGACGGCAGAGGCTCGAGTCCAGACCCTGCAGAAATCTCTCAAGAGGGCCATCGTTAAGTCCAAACCTTACTTCGAGCTCAAGGCCCAGTTCAACTACATACTTGAGGAGCACAAAACCAAAGTGATGCAGCTGGAGGAGCATGTGACCAAAGTGAAAAACCGCTACTCTGTCGCCTTGCACAACCTGGAGCAAATCAGCGAGGCCATCCATGCTCAGCGGGGGCGGAACCAAACCGATGGTGGACAAACCATGGCCTGTGGTGGGCGGAGTCCCCCTATTGGGGCGGAGTCggacagtgtggtgtgtggtgtcgaGGGCGGGGCATGTGAAGGAGGGGCAATGGAGACCGATAGGGTGAACAGAAGCGGCGTGGCGGATAAGAAAATTGGGCTGGTGGAGAAATAcagggagagcgggggagagaggcCCGAGACgcatggagagagagcagggtcaGATTCCCTTTCCGTCTTCAGTCTGCAGACCATCGCTTCTGACCTGGAGAAATGCGATTCCATCGAACACCTCGGAGAATTTAGCGATGTGGGCAGTCTGCctggggaggatggagagaatgagagagggggaggaagggaaagaaGGGATGGGCAAATGCAGCGCCAACAGCAGTTCCTGAAGCAACATCACAGGAGCTTCAGCTTGTGAGAGCTGTCCTTATCGCTTATAGTTTATCAATTAAAAATAAGTGTCCGGTCGAGCTAGCTCATTATCCTGGCAAAAGaccaaaatataaaatatgaggaAAATCAGATCTGCTGTATCTAAAGTAACACATTTTAAACAGGGGGGTATGATATTCAGTAGTAGCGAAGCACAGGTACGTTGACAAGACCTGAAAATATAAGGAGCCTGACAGGTTTTGCATCATATTACAACACTACTGAAACTCCTAGACTGTACATGCCTCTGAGATTAGCTGCTTTACTTCCTTTATTCTGGCAATAACAAAACCTTAGACACATATGTCCTAGTGCATGAAGGAACAATCAAAGTAAGAGACTACAATAAACATGACAACTGGGAGCCCTATTCAATCTAAACGGTAGTAACTGAATTTCTGGTGTAAGATAAAATCAATGTTCTTTTGCAACAAAAAAGTAAGTGTGAATTCATATGTACGCTCCATTTTTGTTTCATACTGTAGATATGGTTTATTTTAGTACATAAATGTAAACGCGTATTGTAAAAAGTGCAAGAACAATTAGTTTTTTTGTACTTATTCTGAAAACCTGGTTTCAGGGTTCTAGTCAATAGGACCCCAAAACAAACTAGAGAGTTACAAACTCCATTCTGACAACTTGCTTGATGACAGAAAGCACTCCAGACTATTTATTTTGACTTTTATTATATGTGTATTAGTATTCAGGTCTAACTAAACATTTTTATAAATTGTTCATAAAATATTACGCTGGCATAATATTATGTTTTACTTGTTTAAATTTTAATAATTTTAAgatcctttgtttttgtatttttttaaataaaataatttcccTATATATTGTTTCTGTAGAGCCTCCTAGGTCGTAAACTGAAATGTGCCTTGTCCTTGACACAGTACTACGCAAACAAAGACAGCATAGCACTGGCTACAACAACACACTGTTCAGATCTGTGTATACAGTATTAAACTGTGGTCAACAGTTGAGAAATACTCCCATGAAGGACATGCTTTTGACCATATGTTTAATTTTAAATGTGAATCATCTATGAGTCATCCTAACTCTGTTTTGCCTGGACTTGtgatatttattttattaatttgaaTATGTTGTCTGTGTactgctttggcaaagtggaggGTACAAGAAATGTAGTCAATGGATTAAATGTAAGTTTGTGTATAATTACACCATTTATAGAGAAAATAATGAAATGTACAGATTTATTTGAATGTCTTTGTATAGTTATTTTAAAGGGATCTTATTTAATGCTGGTTATCTGCTGTATTCCTGAATCGACCTCCGTCTTTGTCCCGCTCTTTACATACTTCCAATAtatccatctcttcccctcattctctcagccatagaaatagaatgactagcaATTGTATTTCTATGCTTTCAACCCTTCAATCATTGTCCATTTGATGTCTTCCTCTTTATTTATTCATAAAGTGGTGCAGTAGTGTGATGTCACCCAGCTATATAGTACAGTTCACTGTTGTTATTTACATGTATGCAATATCAAACAGATAAACAATAAAATAAGAGGAATCTTGACTTTGCCATTTTAAGACCCAA

Function

NR:

description
SH3 domain-binding protein 5-like

GO: NA

KEGG:

id description
K23739 SH3BP5; SH3-domain binding protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560492.2 True 3535 mRNA 0.43 6 35087176 35095775

Neighbor

gene id symbol gene type direction distance location
LOC110488299 LOC106582320 coding downstream 615 35036471 ~ 35086561 (-)
LOC110488264 LOC106605214 coding downstream 104383 34966907 ~ 34982793 (-)
ankmy2a ankmy2 coding downstream 126927 34953061 ~ 34960249 (-)
LOC110488240 LOC106582291 coding downstream 137665 34946899 ~ 34949511 (-)
crppa ispd coding downstream 140962 34913696 ~ 34946214 (-)
LOC110488311 mgat1 coding upstream 739 35096514 ~ 35099521 (-)
LOC110488316 LOC106605221 coding upstream 8093 35103868 ~ 35106886 (-)
LOC110534832 dhx16 coding upstream 12432 35108207 ~ 35122317 (-)
LOC110488360 LOC106605226 coding upstream 62708 35158483 ~ 35174193 (-)
si:ch211-225p5.8 LOC106605232 coding upstream 103569 35199344 ~ 35205128 (-)
G136002 NA non-coding downstream 69981 35016714 ~ 35017195 (-)
G135983 NA non-coding downstream 103011 34983524 ~ 34984165 (-)
G135982 NA non-coding downstream 112586 34974365 ~ 34974590 (-)
G135980 NA non-coding downstream 135096 34951846 ~ 34952080 (-)
G136280 NA non-coding upstream 4390 35100165 ~ 35100983 (-)
G136317 NA non-coding upstream 32015 35127790 ~ 35128022 (-)
G136318 NA non-coding upstream 44633 35140408 ~ 35141438 (-)
G136319 NA non-coding upstream 45775 35141550 ~ 35141729 (-)
G135575 NA other downstream 482698 34604215 ~ 34604478 (-)
G134668 NA other downstream 1221239 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1862074 33208500 ~ 33225125 (-)
G134102 NA other downstream 2299055 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 2335598 32738829 ~ 32756992 (-)
G136399 psmc4 other upstream 210592 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 578523 35674291 ~ 35700846 (-)
G137479 NA other upstream 1274229 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1538418 36634193 ~ 36639005 (-)
G138080 NA other upstream 1730091 36825792 ~ 36828397 (-)

Expression


Co-expression Network