LOC110488311 (mgat1)


Basic Information

Item Value
gene id LOC110488311
gene name mgat1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35096514 ~ 35099521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560503.2
GCTTCCGGTAAAAATGTGCTATCCGGAAGTCTGCAGTCTTGTGAAAACATATGGCAAGAAATGAAGTTGATTTGATAACAAACACAATCAAAATTAAAGTGTGACATCGATACATTATTTCCCCTTCACTTGCTTATTGATCCTGCATACTGTCATCGAAGAGGTTAGTGAAACGAAGGAAGAAATGGCTACAGAGACCGAATGTGTTCTACGTTAAGAAGCTGGAGATTGACATGGAAGGTATGAACTGAAGAACAGCACTTTCATCCCCTAACCAGCTCGCTCACCCACCTCCTGTCCAAGATGAATCCAGCTCTCCCTCAATTTTTCCCTCATACCTTATACATCTTCCTTGTCTTTTTTTGACTCCGGCTTTATCTCATTCTATTTACTTGCTTATGTGTTCATTACTTTACTACAAGAATATTTAAACTAACTAAGTGACCTCTCCACATGTCCTTTTTGCGTTCTGCATTCCTTTGGCGCAACTTGTTTTTTACAAACCCAGTCTTACAAACTTCCTTTCCCTCCTAAGTTGTTTGGGCCATGCTCCGTAAGAGAGGTTCTGCTATTCTCTTTGGTGTTTTTCTCTTTGTCGCCTGGAATGCCATCGTGGTCCTCTATCTGTGGGGCCGACCCCTGTCTGgtcgagaggagagggagatggatggaggacgAGGAGGGGCTGATTTGGCTGGGGATGTGATCCACATGGCAGAAGCCTTTGAGGCAGAGCTTGAAATGCAGAGAAAAATCCTGCTTCAGATACAGGGTCATCGGTCACTATGGGAACAACCCAATGAGAATGGTGCCAGCAGAATTGGCCCCCCTCAAGTGGTCATTCCCATCTTAGTTATAGCCTGTAACAGGGTTACTGTCAAACGCTGCCTGGACAAACTCCTAGAGTACCGCCCCTCAGCTGAACTCTACCCAATTATAGTCAGCCAGGACTGTGGGCATGCAGAGACTGCACAGGTGATTGGTTCTTATGGCAGTCAGGTAACTCACCTGAAACAACCAGACCTGTCAGATATTGCCGTGAGACCAGAACACAAGAAGTTCCAGGGCTACTACAAAATCTCTAGGCACTATCGCTGGGCTCTCAACCAGGTGTTCAACTCTCTTTCACATTCCTCTGTTGTTATTGTGGAAGATGATTTGGAGGTGGCACCAGACTTCTTTGAGTACTTCAGATCCCTTCACCCAATCCTGAAATCTGACcggtctctgtggtgtgtgtctgcctgGAATGACAATGGCCGAGACGGCTACGTCGACCCTGGTAAAGCAGACCTCCTGTACAGGACAGACTTCTTCCCTGGGCTGGGTTGGATGATGCTCAAGGAACTCTGGGTAGAGCTGGAGCCCAAGTGGCCTGGTGCATTCTGGGACGACTGGATGCGTCAGCCAGATCAGCGCAGAGATCGAGCCTGTATTCGACCCGAAATATCCCGAACTTTAACCTTTGGGCGGAAAGGTGTGAGCCTAGGCCAATTTTATGACAAATACCTACGCTACATTAAACTGAATAGTGAATTTGTGCCTTTTACCAAGCTGGATCTGGCTTACTTGAAGGAGGAGAAATACAAGGAGATCTTTGAGAAGCAGGTTTACAGTGCGCATTTGGTCAAATATGAAGAGGTCCAACGGGGACAGTTAAAAGGAGCGGGTCCATTTTGTCTGCACTACTCAAGTAAAGATGGTTTCAAAGTGTTGGCCAAAAACCTGGGTGTGATGGAGGACTTGAAGTCAGGGGTCCCACGGACAGGGTATCGGGGAGTAGTCAGTTTCCTGTCAAGGGGAAGGAGAATCTTTCTGGCACCCCCTCCGGGATGGAGCAAATATGACCCAACCTGGAGTTGATGACAAACACAAAGGACTGAAGAGGAAAGGGCTCTGTACGTTACATCTAGTACTATGGCAACAGAAGTGAGACCAATGAATGCCAGATGTGGACCTTTGGCTTTAAGCTATAGTGAGACCGTTATGACAGATGCCTATCTTTTGTCTTCCATTTCCGATGTTTGATTTTCTCCCCATACTTCTCAGGTTTTTTCATACACTCAAATGAATATATTTTTGCAATGTGGGGTTGGGATAGTAGGGTAGGTAGAGATATGTCATTATTTTCAGagatttcttttttttatatactcTCATCATGCACATGAAATTCAATGCAACATCCACTTTGATTATTCTCAATCTTGTATGCAATTTCTGGGAGCCTATCTGTTACCAATTTGTCAGATGAAAAATATATCTGTGATGTGTTCAATAATGGTGGTGGTCAACTTGTGATTTGTCCTAAAGTATAATTGCTTCACAATATTTAGTTCATCTTTTGgagaactgttttttttttgtcatgtttTGACTATTTTAACCTGGTTATTATAGTGCTTAATGTTTTTCCCAAAGAGATGGCTACTGaagtatgtatttatttaaatgcAAGACACACATCACAAATGCTGTATGTTATGTAATTTTGGGAATTAAATTCTACCAATCACCTCT

Function

symbol description
mgat1 Enables alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Involved in protein N-linked glycosylation via asparagine. Located in Golgi membrane.

NR:

description
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00726 MGAT1; alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560503.2 True 2520 mRNA 0.44 3 35096514 35099521

Neighbor

gene id symbol gene type direction distance location
LOC110488304 LOC106605219 coding downstream 739 35087176 ~ 35095775 (-)
LOC110488299 LOC106582320 coding downstream 9953 35036471 ~ 35086561 (-)
LOC110488264 LOC106605214 coding downstream 113721 34966907 ~ 34982793 (-)
ankmy2a ankmy2 coding downstream 136265 34953061 ~ 34960249 (-)
LOC110488240 LOC106582291 coding downstream 147003 34946899 ~ 34949511 (-)
LOC110488316 LOC106605221 coding upstream 4347 35103868 ~ 35106886 (-)
LOC110534832 dhx16 coding upstream 8686 35108207 ~ 35122317 (-)
LOC110488360 LOC106605226 coding upstream 58962 35158483 ~ 35174193 (-)
si:ch211-225p5.8 LOC106605232 coding upstream 99823 35199344 ~ 35205128 (-)
LOC110488446 LOC106582421 coding upstream 141027 35240548 ~ 35265648 (-)
G136002 NA non-coding downstream 79319 35016714 ~ 35017195 (-)
G135983 NA non-coding downstream 112349 34983524 ~ 34984165 (-)
G135982 NA non-coding downstream 121924 34974365 ~ 34974590 (-)
G135980 NA non-coding downstream 144434 34951846 ~ 34952080 (-)
G136280 NA non-coding upstream 644 35100165 ~ 35100983 (-)
G136317 NA non-coding upstream 28269 35127790 ~ 35128022 (-)
G136318 NA non-coding upstream 40887 35140408 ~ 35141438 (-)
G136319 NA non-coding upstream 42029 35141550 ~ 35141729 (-)
G135575 NA other downstream 492036 34604215 ~ 34604478 (-)
G134668 NA other downstream 1230577 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1871412 33208500 ~ 33225125 (-)
G134102 NA other downstream 2308393 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 2344936 32738829 ~ 32756992 (-)
G136399 psmc4 other upstream 206846 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 574777 35674291 ~ 35700846 (-)
G137479 NA other upstream 1270483 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1534672 36634193 ~ 36639005 (-)
G138080 NA other upstream 1726345 36825792 ~ 36828397 (-)

Expression


Co-expression Network