LOC110488316 (LOC106605221)


Basic Information

Item Value
gene id LOC110488316
gene name LOC106605221
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35103868 ~ 35106886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560525.2
GTACGACTGGTCAGacgagagggagtgagaggtcGCAGATGGAaaagggagggatgagggaggaatATAAAGAGGAAATACCGTACACAGATTTACAGAtcgagagagaagggaaagaagaGACAGCTAAGAGACGAGGGGGAAAACTGGAGGAATAAGGTCCACTTGGCATGTTATTGTCTCAATGGAGATGCAAGGGACTCACTGAATGGGATTTTCTCCACTGGGAAAGTACTCTATGAAGGAACGTCTCTGACGGAcagCTCctctggagagacgtgaaaaACCAGAACTTCCTGTCACTCTCCATCTGACTCAAGCCATCACAGCTACGTCTACCAGAGCACCTCTGCATATCTCTGTCCACCATGAGTGATGACAGGGAAAGACAGGGTGCCGATGGAGGCTGCGGGGCCAAACAGCCGCCCAACGTCAAACCCAAACCTGACAGCAAAGATAGCATCAAGAAGGAGAAAAAGGAGAAATCCACCAAGGTGCGTAGGTCCATGAGCACTgactcagagagaggaggggaatctgggagaaggagggagcgaaagagagacaAAGGTTCGAGGAGAGAGCGTGGTAGAAGCGAGGAGAACAGGAGGCAAGACAGGGATGGAGATGACAGCAACCGAAAGGAGTCTGACCCCCAGGAAAATGACATGGAGGACACTGAGTGCGTGGTTTGCTTCTGCGAATACAACAACGTCTTTAAAACCCCCAAGCTGCTCTCCTGCGGGCACACCTTCTGTCTGGAGTGCCTGGCCCGGATCAACGTGACCTCCTTAGAGCTCAAGTCTCTTTCCTGCCCTGTGTGTCGAGAGCTCACCAAGCTGCCCCATGGCCGCAACCTGCCCCAGCTGGGCAACAACCAGGACATCTTCCGCAAACTCCCTCCAGAGATGCAGAGGGCGCTGTCCGTGCGCTTCAAGCGCAGCAAGGGCAAGCTGGTCCTCAAGAAGCCCCCTCCTGGTACTACTAGCCTGGCCAAGTCCAGCCTCACCCTGCCCACTCTCAAGAAGCAGGACCGACAGGCCTCCAGCGACCTCCAGCTGGGCACCATGGACCAGGGCCTCGCCACTGTCGTGGATGTGGGTCGCCCCCCTAGCAGGGTCAGAGGTCGCCTGCGCAGGATGTTCCGCTCGGACCAGTGCTACTACACCGTGATGGCGTCCATCATCACCATCGCCGTGGCGCTGATGCTGATGGGCATCCTGGCCTTCATGGTCATGCCCAATGTGGTCCTCCACAACGGCAGCAAACCGCAGCAGGGGAATTCCAGCCAACCACAGGCCGGTTAACCAGGGGGTCAAATACCCTAAGGAAAAGAGGGGATGGTGGTGGGATGAATGGAAGTAAGACCAGAGGAGATAATCACTCTGATGTTTTGAGAGGACAAAGATTGTCAGTGACCCTAGTATCTGCCATTTCATTTTCTTTACTAATACTCAGTTACGAGGAAAATGTGAAAGAACTGAAAAGAAAGGTGACCCTGAAAGCACTAGAGAACACTCAACTGGGGTCAATACATAACAAGGACCATGTTGTTTATGAAGGACTGATACACAACAACTACTAATGGGAAAAGTGTATCAAGAGTTATTTTTTTATCTACCATTTTGTCTTCCTTCCTGCAGTATACACATCATGAACAAGGAACATTTACCCAAATGTGAACGGGACAGCTATTGCAGTGAAGTGAGAGTGGACAATGGATGTTGTCTGGGGAAATGTAATTCATTAAAAAGTTGTGTATTATGTAATTGCACTGAAGTCTGCCATGGAGAATTATTTGATTACACTGAGCATTATCTTATTCTTTACATCGCAAAGTAAATATGTTCCGCTCATGATTTTGTTTTACATTCTTTGATGTCTAACTAATGTATGTTTACGTACAAAATATGAATATACATATGGAGTTCAAAAAAgaataatatataaaaaaatataaaaaataacaatGGAATAGGTCTCTCTTGCCATAGCAGAGGTATCCTACCACCCTGAAAAAAACGATTACATTTCCAATAGGCCCAGTGCCATGTTACATGCCGTTGCCTTACAGTAAAACCAAATGTGCTGATTTGATTTCTGATAAGATCTTTGTCTGGCGTAACGTTCCATGACATGTGCACCTTGGTCGCACCTTCCTCTTTTAGTCCCATTAGAGAATCATTTTCTTTtagttttcttttcttttcttgaATATACTATTTCCTGACAggttcagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgttttaACATTTTACTGAAAGCtatgagtatacaaaacattaaaaacacccgctctttcaatgacatagactgactaggtgaatagaggtgaaatctatgatcctttattgatg

Function

NR:

description
probable E3 ubiquitin-protein ligase RNF183

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560525.2 True 2395 mRNA 0.47 2 35103868 35106886

Neighbor

gene id symbol gene type direction distance location
LOC110488311 mgat1 coding downstream 4347 35096514 ~ 35099521 (-)
LOC110488304 LOC106605219 coding downstream 8093 35087176 ~ 35095775 (-)
LOC110488299 LOC106582320 coding downstream 17307 35036471 ~ 35086561 (-)
LOC110488264 LOC106605214 coding downstream 121075 34966907 ~ 34982793 (-)
ankmy2a ankmy2 coding downstream 143619 34953061 ~ 34960249 (-)
LOC110534832 dhx16 coding upstream 1321 35108207 ~ 35122317 (-)
LOC110488360 LOC106605226 coding upstream 51597 35158483 ~ 35174193 (-)
si:ch211-225p5.8 LOC106605232 coding upstream 92458 35199344 ~ 35205128 (-)
LOC110488446 LOC106582421 coding upstream 133662 35240548 ~ 35265648 (-)
LOC118939540 NA coding upstream 200856 35307742 ~ 35324682 (-)
G136280 NA non-coding downstream 2885 35100165 ~ 35100983 (-)
G136002 NA non-coding downstream 86673 35016714 ~ 35017195 (-)
G135983 NA non-coding downstream 119703 34983524 ~ 34984165 (-)
G135982 NA non-coding downstream 129278 34974365 ~ 34974590 (-)
G136317 NA non-coding upstream 20904 35127790 ~ 35128022 (-)
G136318 NA non-coding upstream 33522 35140408 ~ 35141438 (-)
G136319 NA non-coding upstream 34664 35141550 ~ 35141729 (-)
G136332 NA non-coding upstream 68760 35175646 ~ 35176189 (-)
G135575 NA other downstream 499390 34604215 ~ 34604478 (-)
G134668 NA other downstream 1237931 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1878766 33208500 ~ 33225125 (-)
G134102 NA other downstream 2315747 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 2352290 32738829 ~ 32756992 (-)
G136399 psmc4 other upstream 199481 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 567412 35674291 ~ 35700846 (-)
G137479 NA other upstream 1263118 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1527307 36634193 ~ 36639005 (-)
G138080 NA other upstream 1718980 36825792 ~ 36828397 (-)

Expression


Co-expression Network