LOC110534832 (dhx16)


Basic Information

Item Value
gene id LOC110534832
gene name dhx16
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35108207 ~ 35122317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933765.1
AATTCCGCTTCCAGTTGTTGCTCCACAAGTGTCATTGTAAGCAACAGGATTGTTGTTAGTAATGAGAGGGCTAATTTGAACTTCACTCGTTAGTTAAACGTCCACATATTAGTCAGGCGTGAAGCAAATTAACCTAAACTGACAAAGTTTTTGCTAAACTTGCTAGCTGTTGCGTGTTGTGCTGTTTTCATATATCACCCCATGTTCATTGCAGTTTAAAAACAAGTAAAAAATGGCAAACCTAGAGCAATGGGTGAGCGACAGTCTGCACGACATCCTCGCCCTTAGTGACAGATATGTCGCCCAGTTCATGATCGGCTCTGCGCGTAAATCCTTGAGCGCTCAAGACTTTGTGGCCCACCTCAAGTCGATGGGCACCATCGACATTAATCAGAGAGTGATCGCCTTTGCACAGGAACTGTATGAAAAGATTCCTCGTAAACAAGTCGTTGAAAAGCCAGCCAGAGCGATAGAGCGACGTGTCATGGAGATTGAGAGGAAGAATCGAAATTACACCCTACTGTCGGACAGCGAGAGTGACGGAGAGGcggtgagggagaaggagaagaagaaaagtAAAGACCGAGGCGATAAGAGGAAGCACCTCAGGAAAAGGGAGGAGAGTCAATCATCTAGTGAAGAGGAGACCCGTAAAAGCTGCTACTCCTCTTTTCTAAAAGGCCCTTCATCTTTCTCAGTAGTAAGCTGGGCCATGGCGACCAGAAGTCCAGTAagaaggatgaagaggaggaggcatCTCTCGTACACTAAGGCTCCTGAGGCAGACTACCTGGAGGCCTGTGTTGTGTCGGTGCTACAGATCTACGTCACACAGCCCCCCGGAGACTGTCTGGTCTTCCTCACTGGACAGGAGGAGATCGAGACTTGCTGTGAGCTGCTGCAGGAGAGATGCAGGCGTCTGGGCTCTAAGATATCTGAGCTCCTGGTGCTTCCCATCTACGCCAACCTACCTTCCGACATGCAGGCCAAGATCTTCAGCCCCACACCACCTGGCTCACGCAAGGTGGTGGTGGCCACTAACATTGCAGAGACCTCTCTAACCATCGATGGGATCATATACGTCATAGATCCAGGCTTCTGCAAGCAGAAGAGCTATAACGCCCGCACTGGGATGGAGTCTCTGATTGTcacgccttgctcaaggGCCTCAGCCAATCAGCGAGCAGGTCGTGCAGGCAGAGTGGCTGCTGGGAAGTGTTTCCGTCTCTACACTGCGTGGGCGTTTAAACACGAGATGGAGGAGTCCACCGTGCCCGAGATCCAGCGAACCGACCTGGGCAACGTAGTGCTACTGCTCAAGAGCTTGGGAATTAATGACCTTATCCACTTTGACTTCATGGACCCGCCCCCTCACGAGACCCTGGTGTTAGCTCTGGAGCAGCTGTACGCACTGGATGCACTCAACCACCTCGGAGAGCTCACCAAGTTGGGCCGCAGGATGGCTGAGCTGCCGGTGGACCCTATGCTGAGCAAGATGATCCTGGCCTCAGAACAgTATAAGTGTTCTGAGGAGGTTTTGACCATTGCTGCTATGCTGTCTGTGAACAACTCCATCTTCTACCGGCCCAAAGACAAGGTGGTTCACGCTGACAACGCCAGGCAGAACTTTGTGGTCCCCGGAGGAGACCATATGGTGCTGCTCAACGTCTACACACAGTGGCTGGAGAGTGGCTACTCCACCCAGTGGTGCTATGAGAACTTCATCCAGTTCCGCTCCATGAAGCGGGCGCGGGATGTCAGGGAGGGCCTGATGGACAGGATCGAGGTGGAGGTGTGCAGCTCAGGCGGCGACATTGTGCCCATCCGCAAGGCAGTGACGGCGGGGTACTTCTACCACACGGCGCGGCTTAGCAAGGGGGGCTACAAGACGGTGAAGCACCAGCAGACAGTCTACGTCCACCCCAACAGCTCCCTGTTCGAGGAGCAGCCCCGTTGGCTCATCTACCACGAGCTGGTCTTCACTACCAAGGAGTTCATGAGACAGGTGATTGAGATAGACAGCAGCTGGCTGCTGGAGGTGGCTCCCCACTACTACAAGAACAAGGAGCTGGAGGACAGCAGCAGTAAGAAGATGCCTCGCAAACAGGGCAAGGCCAAGGAAGAGCTGGGCTAAGGACAGGAACTAGAAAAGACTCCGATACTTTCTCCCCTCAGAGATAAGACAGCCAAGCAGGGCTGCCATAAGGaacagagatttttttttttttactttgaggCCCTTGAGCCAAAAAAAAAAGGTACTGGATAAAAACTTGCATGGTTGTGGGCTTATTTATCATAAACCACCTATCGGAGCTAGACGAGCTTGATGATAAGGAAATGTTATGCACTTGGACTGTCAGTTTCCTGTGTCTGGTATGATGCAGGGtccagggtgaagtttccccaaagtacagatctaggatcagcttcccctccccatgTCCTAACCATTAGGGGGGATGCAAAACTGAACCAATTATCAGTGTCTAGGTGTAACTTCACCCTGCTCCATGATGCAGAAACAAGCAGCAAGACAGATGAAAACAAATGGCTACTGCTTTGTATGTAATGGCCAATGACCAGCAGAGAGTTAGCATATTTACTTTCCCTAAATAGTTCACTTTTTTTGCCCAATGTCTGGATGTTGTTGGGGTTGTACATGTATTTTCTTGTCCCAATTTACACCTAACAGACGGACAGCCAACAATGCTGTGTGTATTTGACTCCAGTATGGTTCCACTATCTCTTTCATTTTCTATTGGAATAAACTTTTTTACAGGCA
>TU156945
GCTTAGCAAGGGGGGCTACAAGACGGTGAAGCACCAGCAGACAGTCTACGTCCACCCCAACAGCTCCCTGTTCGAGGAGCAGCCCCGTTGGCTCATCTACCACGAGCTGGTCTTCACTACCAAGGAGTTCATGAGACAGGTGATTGAGATAGACAGCAGCTGGCTGCTGGAGGTGGCTCCCCACTACTACAAGAACAAGGAGCTGGAGGACAGCAGCAGTAAGAAGATGCCTCGCAAACAGGGCAAGGCCAAGGAAGAGCTGGGCTAAGGACAGGAACTAGAAAAGACTCCGATACTTTCTCCCCTCAGAGATAAGACAGCCAAGCAGGGCTGCCATAAGGaacagagatttttttttttttactttgaggCCCTTGAGCCAAAAAAAAAAGGTACTGGATAAAAACTTGCATGGTTGTGGGCTTATTTATCATAAACCACCTATCGGAGCTAGACGAGCTTGATGATAAGGAAATGTTATGCACTTGGACTGTCAGTTTCCTGTGTCTGGTATGATGCAGGGtccagggtgaagtttccccaaagtacagatctaggatcagcttcccctccccatgTCCTAACCATTAGGGGGGATGCAAAACTGAACCAATTATCAGTGTCTAGGTGTAACTTCACCCTGCTCCATGATGCAGAAACAAGCAGCAAGACAGATGAAAACAAATGGCTACTGCTTTGTATGTAATGGCCAATGACCAGCAGAGAGTTAGCATATTTACTTTCCCTAAATAGTTCACTTTTTTTGCCCAATGTCTGGATGTTGTTGGGGTTGTACATGTATTTTCTTGTCCCAATTTACACCTAACAGACGGACAGCCAACAATGCTGTGTGTATTTGACTCCAGTATGGTTCCACTATCTCTTTCATTTTCTATTGGAATAAACTTTTTTACA

Function

symbol description
dhx16 Predicted to enable RNA binding activity. Acts upstream of or within endodermal cell differentiation. Orthologous to human DHX16 (DEAH-box helicase 16).

NR:

description
PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933765.1 False 2785 mRNA 0.50 16 35108207 35122317
TU156945 True 915 lncRNA 0.41 2 35108211 35112819

Neighbor

gene id symbol gene type direction distance location
LOC110488316 LOC106605221 coding downstream 1321 35103868 ~ 35106886 (-)
LOC110488311 mgat1 coding downstream 8686 35096514 ~ 35099521 (-)
LOC110488304 LOC106605219 coding downstream 12432 35087176 ~ 35095775 (-)
LOC110488299 LOC106582320 coding downstream 21646 35036471 ~ 35086561 (-)
LOC110488264 LOC106605214 coding downstream 125414 34966907 ~ 34982793 (-)
LOC110488360 LOC106605226 coding upstream 36166 35158483 ~ 35174193 (-)
si:ch211-225p5.8 LOC106605232 coding upstream 77027 35199344 ~ 35205128 (-)
LOC110488446 LOC106582421 coding upstream 118231 35240548 ~ 35265648 (-)
LOC118939540 NA coding upstream 185425 35307742 ~ 35324682 (-)
LOC110488508 LOC106605236 coding upstream 225526 35347843 ~ 35357991 (-)
G136280 NA non-coding downstream 7224 35100165 ~ 35100983 (-)
G136002 NA non-coding downstream 91012 35016714 ~ 35017195 (-)
G135983 NA non-coding downstream 124042 34983524 ~ 34984165 (-)
G135982 NA non-coding downstream 133617 34974365 ~ 34974590 (-)
ankmy2a ankmy2 non-coding downstream 154755 34953061 ~ 34960249 (-)
G136317 NA non-coding upstream 5473 35127790 ~ 35128022 (-)
G136318 NA non-coding upstream 18091 35140408 ~ 35141438 (-)
G136319 NA non-coding upstream 19233 35141550 ~ 35141729 (-)
G136332 NA non-coding upstream 53329 35175646 ~ 35176189 (-)
G136340 NA non-coding upstream 68771 35191088 ~ 35191671 (-)
G135575 NA other downstream 503729 34604215 ~ 34604478 (-)
G134668 NA other downstream 1242270 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 1883105 33208500 ~ 33225125 (-)
G134102 NA other downstream 2320086 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 2356629 32738829 ~ 32756992 (-)
G136399 psmc4 other upstream 184050 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 551981 35674291 ~ 35700846 (-)
G137479 NA other upstream 1247687 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1511876 36634193 ~ 36639005 (-)
G138080 NA other upstream 1703549 36825792 ~ 36828397 (-)

Expression


Co-expression Network