LOC110488356 (ccdc105)


Basic Information

Item Value
gene id LOC110488356
gene name ccdc105
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35150511 ~ 35151707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946911.1
ACAGCGGGATATGCTTTCCAGAGAGAAACTGAACAGGCCTATAGTAAACGTTTACCACAGACACCCTGGGACCCAGTTACCTGAGGCTGCTCATCTCATACAGGGTAGTTCTGTGTTGAGACGCTGCCTGCTGTCCTCTAAAGAGGAGCTCTTCAGGCTACAGGGCACATGTCTGGAGCGGGTGGACAACCTGCACAGCAAGAGGGCCGCAGAGCAGGTGGACTCTGCCGTGGTCAGGCTGCGGCGGCAGCTGGTCGAAAGACGAGCAATGCCCACTTTCCTCCAACAGGGGTTGCACTAAACTCATTATGTAGTGCATGACCCAATTCATCTTTCTTCATTGTTTCCTCTCTCCTTGGTTCCTTCTCAAAAATGCATTGGAGGAGAAGAAAGATAAAAGGTTCCTCCCCTCTGATCTTCTCCTCCAATGCATTTTGAGAAGTAGATgagaggaatcaaggaaagagAAGAGCCCCTATCTATAGTTGTATACAAacggtatgtgtgtgttttatcctGGATATGAAGCGAAAGAGGGACCAATGTGCTGAAAAGGGACCATTTAAACAAGATGATTAGGAAGGTATGTTTAACCTAGTCATGTGTGGCATCCCAACTCTCAATTAACCACATTTCTGCATTACACCATTAACGTGTACTTGAAATAAACATAAACAGTATTTCTCTGCAAACTCAGCCCCATTGCTTATTGTATGGGAGTCCCTTAGAGCATAAATGTGCATGGGTTTCATTCGCCTGTACTTGATCTCCTTGTCATACTGCCATTTTGTACAGGTTGGCATCTATAATATGAATTGAATATGTTCAGCATTGACTGCATTAGAATCACAAACCGTGTACTGTTTATGTTCAACTTCACCTCTGAATAAATGTACACCGTTATAAAGTCCAGTCTCCATCGCCCCCCCTCCTCTTCAGTCCGAGTCATAAGACTGCAAGTCACTTGACAGTCCTCCCTCTAAACTTCATGTGTTT

Function

symbol description
ccdc105 Orthologous to human CCDC105 (coiled-coil domain containing 105).

NR:

description
coiled-coil domain-containing protein 105

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946911.1 True 996 mRNA 0.45 2 35150511 35151707

Neighbor

gene id symbol gene type direction distance location
LOC110488331 LOC106582353 coding upstream 9035 35127970 ~ 35141476 (+)
LOC110533739 ppt2a coding upstream 22997 35122803 ~ 35127514 (+)
tnf-alpha tnf-alpha coding upstream 125503 35023007 ~ 35025008 (+)
lt-b2 lt-b2 coding upstream 140805 35004580 ~ 35009706 (+)
LOC110488281 apom coding upstream 150526 34984948 ~ 35000555 (+)
lypc LOC106584559 coding downstream 94 35151760 ~ 35153650 (+)
LOC110488375 LOC106605227 coding downstream 20867 35172574 ~ 35180466 (+)
LOC110488391 LOC106582385 coding downstream 28943 35180650 ~ 35184002 (+)
dnajc28 dnajc28 coding downstream 36118 35187825 ~ 35195853 (+)
LOC110534843 LOC106605230 coding downstream 53474 35205181 ~ 35239245 (+)
G136079 NA non-coding upstream 5065 35143735 ~ 35145446 (+)
G136055 NA non-coding upstream 48436 35101843 ~ 35102075 (+)
G136044 LOC106605219 non-coding upstream 61179 35087279 ~ 35089332 (+)
G136021 LOC106582320 non-coding upstream 101557 35042312 ~ 35048954 (+)
G136086 NA non-coding downstream 6125 35157832 ~ 35158037 (+)
G136097 NA non-coding downstream 47635 35199342 ~ 35200486 (+)
G136144 NA non-coding downstream 137670 35289377 ~ 35289644 (+)
G136199 NA non-coding downstream 239361 35391068 ~ 35391284 (+)
G135920 LOC106605214 other upstream 177710 34972449 ~ 34972801 (+)
G135916 NA other upstream 178580 34971640 ~ 34971931 (+)
si:dkey-30e9.6 LOC106605205 other upstream 459565 34687955 ~ 34692286 (+)
G134735 LOC100136012 other upstream 1187853 33962417 ~ 33962658 (+)
LOC110488639 LOC106605005 other downstream 633984 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 703442 35855149 ~ 35865269 (+)
G136994 NA other downstream 831125 35982832 ~ 36037741 (+)

Expression


Co-expression Network