lypc (LOC106584559)


Basic Information

Item Value
gene id lypc
gene name LOC106584559
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35151760 ~ 35153650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946906.1
ACTGTAGATACCAGCAATATACTTGTGTATCTTCCTTGCAATACACACTATTTAACTGAATACTCAGATAGTTTGTTTCTACTTGAGTGTTTATGCAGACTCCAGTGCAAACTTCACAATCAGCTGTGGCGGAGGAGTGACTTCAGTCTTATCACTGGGCGGCTAATGTCCTAATTGAATCAGATGTGTTGGGGTGGGGAGATGTTTGGAGATATTTAAGGTAGTATCAAGGAAAAACGAGAGGCGATCTTCAGATCTGTGCAGACGATGCATGAAGAGAGGGAAGACTAAAAGCACTGGCATAATACCATAAGTTTGTACAGACGCATCCCCAGAAAGGACGATATCAACACATTTTACTGGATAAGAGAAGGTTGCAACAAGTAATTGTTTTTTAGATGATCATTTATCTAGACTAACTAGATAAGGAGAAGACAGAAAGGTCGTGAGGAGCTGGGAAAGCAGTCAAATCAAAGGGAAAACAGGATATTGTCTGTTTGGAGAGAGACAAAAAAACAAGTGATGTCGCAGCTTCTATGCCATCTGCTTTTACTGTGTCTGGTACCATCTGTGGTTCCTCTGTTTTGCTTCACCTGTGTCTTCCCTGCCATCTCCCCACTGGACTGTATCAAGTTCCCTCAGAAGTGTCCTCCAGGTCAGCAATGTCTGTCCAGCAAAGCTGTGGGGAAGCGCGGAGAGTTCAGTGTGACACTGTATGAGAAGAGCTGTGTCCTCTCCGCCCTGTGTGGCCTGACTGGTGAGAAGTACGCCATGGGCCTCAACTTCACCTTTACCAATGAATGCTGTTCCACCCACCTGTGTAATGGAGCTGCAGCCCCCTCTGCCCTCTACTGGACTGGCTctgctctcgctctcctctcatTCACACTCTCACTGTGATTTACCCACCTTTTAAAGATAATGCTACTTTTGCTAAATTCATAAGGAAAACATGACCACATTCAGATGCCTAGCATTGGTCGAAACCTTTCAGATATAAATGTGATGAACAGAGCTGGCATGATTCCTTGTTGTAATTGTTGGAGGCATGTTTGTTATAATGTACATAGCTTATCTGTCAGTTCCAACACTTTCTATCAGTTCCAAAACGTTGTATTCTGCTGAACGTGGCCCAGGTGTTTAACACAGTAAATGTGTGCTTTCTGTACATGAAATATGGACAGATGAGATCATTTTCATTGAATTGACCATTTCTTAGAGATGAGCAAAGCACACACATGGTTTTCCTCAagtaatgtaaaataatgtgctTAACACTTTCTTTTACATCTAGGCATGGCATTAACAATATCCCACATTTATCTGTCATCAAAGTTGAAAATGAGAGCTAACAACGTATAAAGCATCCACTGTATGGATAATA
>TU156680
AGGATCACTGTATAAAGGCCCTCGATACACGGCAAAGCAGTACTGTAGATACCAGCAATATACTTGTGTATCTTCCTTGCAATACACACTATTTAACTGAATACTCAGATAGTTTGTTTCTACTTGAGTGTTTATGCAGACTCCAGTGCAAACTTCACAATCAGCTGTGGCGGAGGAGTGACTTCAGTCTTATCACTGGGCGGCTAATGTCCTAATTGAATCAGATGTGTTGGGGTGGGGAGATGTTTGGAGATATTTAAGGTAGTATCAAGGAAAAACGAGAGGCGATCTTCAGATCTGTGCAGACGATGCATGAAGAGAGGGAAGACTAAAAGCACTGGCATAATACCATAAGTTTGTACAGACGCATCCCCAGAAAGGACGATATCAACACATTTTACTGGATAAGAGAAGGTTGCAACAAGTAATTGTTTTTTAGATGATCATTTATCTAGACTAACTAGATAAGGAGAAGACAGAAAGGTCGTGAGGAGCTGGGAAAGCAGTCAAATCAAAGGGAAAACAGGATATTGTCTGTTTGGAGAGAGACAAAAAAACAAGTGATGTCGCAGCTTCTATGCCATCTGCTTTTACTGTGTCTGGTACCATCTGTGGTTCCTCTGTTTTGCTTCACCTGTGTCTTCCCTGCCATCTCCCCACTGGACTGTATCAAGTTCCCTCAGAAGTGTCCTCCAGGTCAGCAATGTCTGTCCAGCAAAGCTGTGGGGAAGCGCGGAGAGTTCAGTGTGACACTGTATGAGAAGAGCTGTGTCCTCTCCGCCCTGTGTGGCCTGACTGGTGAGAAGTACGCCATGGGCCTCAACTTCACCTTTACCAATGAATGCTGTTCCACCCACCTGTGTAATGGAGCTGCAGCCCCCTCTGCCCTCTACTGGACTGGCTctgctctcgctctcctctcatTCACACTCTCACTGTGATTTACCCACCTTTTAAAGATAATGCTACTTTTGCTAAATTCATAAGGAAAACATGACCACATTCAGATGCCTAGCATTGGTCGAAACCTTTCAGATATAAATGTGATGAACAGAGCTGGCATGATTCCTTGTTGTAATTGTTGGAGGCATGTTTGTTATAATGTACATAGCTTATCTGTCAGTTCCAACACTTTCTATCAGTTCCAAAACGTTGTATTCTGCTGAACGTGGCCCAGGTGTTTAACACAGTAAATGTGTGCTTTCTGTACATGAAATATGGACAGATGAGATCATTTTCATTGAATTGACCATTTCTTAGAGATGAGCAAAGCACACACATGGTTTTCCTCAagtaatgtaaaataatgtgctTAACACTTTCTTTTACATCTAGGCATGGCATTAACAATATCCCACATTTATCTGTCATCAAAGTTGAAAATGAGAGCTAACAACGTATAAAGCATCCACTGTATGGATAATACATTGTCTGGATATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946906.1 False 1384 mRNA 0.42 3 35151801 35153635
TU156680 True 1440 TUCP 0.45 3 35151760 35153650

Neighbor

gene id symbol gene type direction distance location
LOC110488356 ccdc105 coding upstream 94 35150511 ~ 35151707 (+)
LOC110488331 LOC106582353 coding upstream 10325 35127970 ~ 35141476 (+)
LOC110533739 ppt2a coding upstream 24287 35122803 ~ 35127514 (+)
tnf-alpha tnf-alpha coding upstream 126793 35023007 ~ 35025008 (+)
lt-b2 lt-b2 coding upstream 142095 35004580 ~ 35009706 (+)
LOC110488375 LOC106605227 coding downstream 18939 35172574 ~ 35180466 (+)
LOC110488391 LOC106582385 coding downstream 27015 35180650 ~ 35184002 (+)
dnajc28 dnajc28 coding downstream 34190 35187825 ~ 35195853 (+)
LOC110534843 LOC106605230 coding downstream 51546 35205181 ~ 35239245 (+)
LOC110488465 psmc4 coding downstream 140464 35294099 ~ 35307452 (+)
G136079 NA non-coding upstream 6355 35143735 ~ 35145446 (+)
G136055 NA non-coding upstream 49726 35101843 ~ 35102075 (+)
G136044 LOC106605219 non-coding upstream 62469 35087279 ~ 35089332 (+)
G136021 LOC106582320 non-coding upstream 102847 35042312 ~ 35048954 (+)
G136086 NA non-coding downstream 4197 35157832 ~ 35158037 (+)
G136097 NA non-coding downstream 45707 35199342 ~ 35200486 (+)
G136144 NA non-coding downstream 135742 35289377 ~ 35289644 (+)
G136199 NA non-coding downstream 237433 35391068 ~ 35391284 (+)
LOC110488281 apom other upstream 151246 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 179000 34972449 ~ 34972801 (+)
G135916 NA other upstream 179870 34971640 ~ 34971931 (+)
si:dkey-30e9.6 LOC106605205 other upstream 460855 34687955 ~ 34692286 (+)
G134735 LOC100136012 other upstream 1189143 33962417 ~ 33962658 (+)
LOC110488639 LOC106605005 other downstream 632056 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 701514 35855149 ~ 35865269 (+)
G136994 NA other downstream 829197 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 945976 36099611 ~ 36100277 (+)

Expression


Co-expression Network