LOC110488375 (LOC106605227)



Basic Information


Item Value
gene id LOC110488375
gene name LOC106605227
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35172574 ~ 35180466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021560615.2
CTATATGTTGTAATAGCTGTAGGATATGAAGAAAAGTAATGATAATTTCGTTATACGTTTCTGGAAGTGATTTGACTTCAGTGGACAAGAAACAGGATGGACACCTGCAATGCGTGAAAGGGAACGGGGAGTCACGAAGCAAGATGACACATTCCTTTGCGCCGGGGAGCAGGCACGCCCCTCCAAGCTCTGCTGCTTTATAACGGGACTGGGCCGGGCAGAGGGAGACTACACAATTGTAACTCTGAACTCCAAGTGAAAGCAACTGTTCCAGTCAAAGATGTACTGGGATACCATCCTGAAATCCAACGAGAGAAACATAGATACCAGAGACTCTAAAATAAAGATGGAGATATACCAAGCTGGATATTATAGGGAAGACTTCAGAACACAGGAAGTCCCTGCTGGTTTGGACTTTGCATCATATGACAGTAAAGGACCAgggcagcagcaacagtatccaGAGAGTTATGGAGAGCTGCAGAAGAATCCACGTCCGTACGACAACAAAGTAACCTCAAGTGACTCTGTCCTGTTCAACCTGGATTCATACCCAGAGTTTAACTGTTGGGCGTCATACCCAAGTGATGGGCTGACTTTGGGCCAGTCTCAAGCGGGGTTCCAGGATTCCACCCAGACGTACCACAGCCTTGTGCCCCTGTGTTCCCCAGCCCAGAGTGGACAGTTCAGCCCGGGCATGGAAGATGCCAGCACCAGCAACTCTTTCCTCCCTGGAAAAGGAACGAGCCACAGAGGGACCCCCAGCACTGTCAGCCTGGACCACCTCAATGAATCTGAGCAAAGCTACACCCGTCACTCAGGTGAAAAACTGTATGACTCAGAAGCACAGAAGACCTCCTTCTGGCCGGACTACCCCTCTCCCAGCTATAGCGCATCCCTGCCGCCCCCTCACCACCCTCCATCTTGTTCCTCAATCCCTGGACCACAGCAGCCCTCAGAGCTGTACTGCCCCCGTGTGGCCAAACGCAAAAGTGCACACTCCCAAAGACCCGAGAGGGAAGGAGGACAAGTGATGGGAATGTCAGTTTATCCAGGATCAGGGCCCATCCAATTGTGGCAGTTCTTACTGGAGCTGCTTCTAGACTCCTCCTGCTGTACCTTCATCTGCTGGACAGGAGACGGTTGGGAGTTCAAGATGTCCGACCCAGCAGAGGTGGCCAAGCGCTGGGGTCAGTGTAAGAACAAGCCCAAGATGAACTATGAGAAGCTGAGCCGCGGCCTGCGCTACTACTACCACAAGAACATTATCCACAAAACGACGGGCAAGCGCTACGTCTACCGCTTCGTCTGCGACGTGCAGGGGATGCTGGGAAAGACGGCACAGGAGGTCCTAGCCAGCCTGAACATTTTACCCACGAGTACAGAGTCAGCCTGGCAAGGCCAGGGGGCACCAGTATTATCGCCAGAGTCCAGCGAAGCATGGGCGTCGCAGTAGGGGGAGTGTACCAGCAGCTACATCACTAATatgctatgtagaacaaacatgcctcttaGACATGTAGAAAATGAATCACATTGGCTCTATTTATGGCATTTCTATCTGCACCATTAGACAATGTTTGGTGTAAGACTTTTATTACCAAGTGATACAGTAGTAGCCATAGAtgtgggaagtaggggtgcttcACTCCTGAAAATCAGAATAAACAAATTCTGTTGTAGCCTTCAATTAGATTTCATTTTAGTGTATGACTTACCTCCTATTAACATCAGCAGAATAAGAGCTCAATGAAACTGTAAGCCCAGCTGTCTCCAATACTGATGCTCTTTATGTTAATTACATGGTTAGTGATTAACAACCCCCCTCCATCCTCAAGTACTTCTTGCCTCTAAAATAATGGGTGCATGACACCACTTCTTACCACCCATGCTGTTGAACAATGTTCAACATTAACTTTGACTGTGAGGATCTATTTTTATACCCTAACATATCTACCTCTTTTATTGCTGACAAAGTAAAGCTAAGAGGGACCATGCTTGTTCTGTTGAATATAATGTGTATGATTTACATGATTTAGGGAACAATATTGTTTGTAAAATGTTTGTAAATAAACTGTACATAACTTGAAAATACTA
>XM_021560610.2
TATATGTTGTAATAGCTGTAGGATATGAAGAAAAGTAATGATAATTTCGTTATACGTTTCTGGAAGTGATTTGACTTCAGTGGACAAGAAACAGGATGGACACCTGCAATGCGTGAAAGGGAACGGGGAGTCACGAAGCAAGATGACACATTCCTTTGCGCCGGGGAGCAGGCACGCCCCTCCAAGCTCTGCTGCTTTATAACGGGACTGGGCCGGGCAGAGGGAGACTACACAATTGTAACTCTGAACTCCAAGTGAAAGCAACTGTTCCAGTCAAAGATGTACTGGGATACCATCCTGAAATCCAACGAGAGAAACATAGATACCAGAGACTCTAAAATAAAGATGGAGATATACCAAGCTGGATATTATAGGGAAGACTTCAGAACACAGGAAGTCCCTGCTGGTTTGGACTTTGCATCATATGACTACAGTGATGAAGACCTGTCTTTTCTATTAGACAGTAAAGGACCAgggcagcagcaacagtatccaGAGAGTTATGGAGAGCTGCAGAAGAATCCACGTCCGTACGACAACAAAGTAACCTCAAGTGACTCTGTCCTGTTCAACCTGGATTCATACCCAGAGTTTAACTGTTGGGCGTCATACCCAAGTGATGGGCTGACTTTGGGCCAGTCTCAAGCGGGGTTCCAGGATTCCACCCAGACGTACCACAGCCTTGTGCCCCTGTGTTCCCCAGCCCAGAGTGGACAGTTCAGCCCGGGCATGGAAGATGCCAGCACCAGCAACTCTTTCCTCCCTGGAAAAGGAACGAGCCACAGAGGGACCCCCAGCACTGTCAGCCTGGACCACCTCAATGAATCTGAGCAAAGCTACACCCGTCACTCAGGTGAAAAACTGTATGACTCAGAAGCACAGAAGACCTCCTTCTGGCCGGACTACCCCTCTCCCAGCTATAGCGCATCCCTGCCGCCCCCTCACCACCCTCCATCTTGTTCCTCAATCCCTGGACCACAGCAGCCCTCAGAGCTGTACTGCCCCCGTGTGGCCAAACGCAAAAGTGCACACTCCCAAAGACCCGAGAGGGAAGGAGGACAAGTGATGGGAATGTCAGTTTATCCAGGATCAGGGCCCATCCAATTGTGGCAGTTCTTACTGGAGCTGCTTCTAGACTCCTCCTGCTGTACCTTCATCTGCTGGACAGGAGACGGTTGGGAGTTCAAGATGTCCGACCCAGCAGAGGTGGCCAAGCGCTGGGGTCAGTGTAAGAACAAGCCCAAGATGAACTATGAGAAGCTGAGCCGCGGCCTGCGCTACTACTACCACAAGAACATTATCCACAAAACGACGGGCAAGCGCTACGTCTACCGCTTCGTCTGCGACGTGCAGGGGATGCTGGGAAAGACGGCACAGGAGGTCCTAGCCAGCCTGAACATTTTACCCACGAGTACAGAGTCAGCCTGGCAAGGCCAGGGGGCACCAGTATTATCGCCAGAGTCCAGCGAAGCATGGGCGTCGCAGTAGGGGGAGTGTACCAGCAGCTACATCACTAATatgctatgtagaacaaacatgcctcttaGACATGTAGAAAATGAATCACATTGGCTCTATTTATGGCATTTCTATCTGCACCATTAGACAATGTTTGGTGTAAGACTTTTATTACCAAGTGATACAGTAGTAGCCATAGAtgtgggaagtaggggtgcttcACTCCTGAAAATCAGAATAAACAAATTCTGTTGTAGCCTTCAATTAGATTTCATTTTAGTGTATGACTTACCTCCTATTAACATCAGCAGAATAAGAGCTCAATGAAACTGTAAGCCCAGCTGTCTCCAATACTGATGCTCTTTATGTTAATTACATGGTTAGTGATTAACAACCCCCCTCCATCCTCAAGTACTTCTTGCCTCTAAAATAATGGGTGCATGACACCACTTCTTACCACCCATGCTGTTGAACAATGTTCAACATTAACTTTGACTGTGAGGATCTATTTTTATACCCTAACATATCTACCTCTTTTATTGCTGACAAAGTAAAGCTAAGAGGGACCATGCTTGTTCTGTTGAATATAATGTGTATGATTTACATGATTTAGGGAACAATATTGTTTGTAAAATGTTTGTAAATAAACTGTACATAACTTGAAAATACTA

Function


NR:

description
protein C-ets-2-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021560615.2 False 2097 mRNA 0.47 9 35172574 35180466
XM_021560610.2 True 2129 mRNA 0.47 9 35172575 35180466
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Neighbor


gene id symbol gene type direction distance location
lypc LOC106584559 coding upstream 18939 35151760 ~ 35153650 (+)
LOC110488356 ccdc105 coding upstream 20867 35150511 ~ 35151707 (+)
LOC110488331 LOC106582353 coding upstream 31098 35127970 ~ 35141476 (+)
LOC110533739 ppt2a coding upstream 45060 35122803 ~ 35127514 (+)
tnf-alpha tnf-alpha coding upstream 147566 35023007 ~ 35025008 (+)
LOC110488391 LOC106582385 coding downstream 184 35180650 ~ 35184002 (+)
dnajc28 dnajc28 coding downstream 7359 35187825 ~ 35195853 (+)
LOC110534843 LOC106605230 coding downstream 24715 35205181 ~ 35239245 (+)
LOC110488465 psmc4 coding downstream 113633 35294099 ~ 35307452 (+)
LOC110488474 LOC106605235 coding downstream 144810 35325276 ~ 35334443 (+)
G136086 NA non-coding upstream 14537 35157832 ~ 35158037 (+)
G136079 NA non-coding upstream 27128 35143735 ~ 35145446 (+)
G136055 NA non-coding upstream 70499 35101843 ~ 35102075 (+)
G136044 LOC106605219 non-coding upstream 83242 35087279 ~ 35089332 (+)
G136097 NA non-coding downstream 18876 35199342 ~ 35200486 (+)
G136144 NA non-coding downstream 108911 35289377 ~ 35289644 (+)
G136199 NA non-coding downstream 210602 35391068 ~ 35391284 (+)
G136201 LOC106584099 non-coding downstream 212842 35393308 ~ 35393788 (+)
LOC110488281 apom other upstream 172019 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 199773 34972449 ~ 34972801 (+)
G135916 NA other upstream 200643 34971640 ~ 34971931 (+)
si:dkey-30e9.6 LOC106605205 other upstream 481628 34687955 ~ 34692286 (+)
LOC110488639 LOC106605005 other downstream 605225 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 674683 35855149 ~ 35865269 (+)
G136994 NA other downstream 802366 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 919145 36099611 ~ 36100277 (+)

Expression


LOC110488375(LOC106605227) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110488375(LOC106605227) Expression in each Bioproject

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LOC110488375(LOC106605227) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network