LOC110488446 (LOC106582421)


Basic Information

Item Value
gene id LOC110488446
gene name LOC106582421
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35240548 ~ 35265648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560672.2
CCGGTCCCAAAGAGTGATATAGCCTAAATAGGCTGCAGCCTTCCGAAGACCATGTAATTTCGCGGACTCATCCGTTTTCTCCTCGGCGCTCTGGTCGCCTATTCAATAGCAAATTATGTTGAAAAATAGCCTGTTCGTAGGCCTACTGTGGATATTATTTGAAAGTGCCTAGAATGGGATTTTTCgctttttatttgtaaaattctGTGCCACGTTTTACTCGCCGCAGCAGATCTCTCAAACGCACGGACTTGCCTGGGAGGCAACAGTCGTCCGAAAACCTTGGAGTAGACGCAATGGAGAATATAATCTAAAGAGGAACACATGGGGAAAGAAAATAAGGAATAGGAGGGTACCGTACATAACGACAGATATTGCTCATAAGCGCAGCATATCTTTTTAAAATGTGAAGTGGCCAGAATCAGAGAAAGTCACGAATTTTATTCGGTTTTTAATGAGGCATTTTGATTAATTAATTTTGTGCTTTGTATAGTCATATCCAATAATATACCGGAATGTAGCTTTGCAGGGTATGTGTATGACCACTGCTATAATAACAAATGGTAAAACGCTAGATAGGTCAATAAGGCCTATTGTAAAGTTATTTCTACATGCCCTCTTGGCCACAATCAACCTTAATTGTTGTGTATGGAATGACCTGTTATCCTGACCAAAAGGGTTCAGTGTTACCATGCAGGAGTGTATTGGTTTGAACAAGAACAAACATGTAAGCACTAAGAAGGCCTACTGTAAGTCCTCTGGATAAgcgcatctgctaaatgacaaaaatgtcaagTAAAAACCTCAATTATCATAAGTGTTGTGGAATGATGTTTATTTTTGCAAATATAACACTTTCTTATGTTGAATGGTGCATTGCATCTCTCAAACTCATTGCACAATTATCTGTCTTCCGTGAAATGCACAAATTCTATCAGACACACTAATGTTGTCTTCTACTTTCTGAGCCTAAACTCAACATGTCTTCCCGAACAATCTCACCACAAAGAATCATTGATCATATCAGCTGCTAGTCTATTTACCACGTTGCTTTTTTTTCTGTGCACACCCAGTCACATTGCCAACCAACGCGTCCAGATTATAAATAGTTGAACAAAAGCTTTAAACGAGCAGCCAGGGTTACTGAAACCGAAGGCGCAGGGCATTATTTCTTCATCATTAGTTACTGAATACGGTTGTGTGGAGACTGTGAATTCTGTAGACTATCAGCTGGACAGGCACCAGTCTGATTTAGAACGGAGGCCGGTAAAGGTAAGGAGGAGGCTGCTTATTCCTGACGCTGAAGGGGCACTGACAAGGACGCAGCCTAGAGCTGACATCCACCTCACCTGGCCACTCGTCCcactcccccccccacacagggACACCCCCTAGGCCGAGCACCAGCTGAAGAGGAGGACAAAAAATGTTCTCTGACTGTGAGCTGCATCTCACCAGAAGAGGTCCTGCCTCAGATCTCCTCCCCCAGACTGGTTGAGACGCTCCGGTTGTGTTTTGATATTTTTCCCTTGAGTTTTTTTGTACTAATCCTCACTGGAGTGAGAGAGTGAAGACATTTTGAAGACCCAGAGGTTTTTGCTGTGGGAGCACCTTTACTTGGAGTAGCTGCTAATAGACGGAGACCTCCAGTCTTTCTTTGTCTTTCCCTGTCTgtggtgtttgtggtgtgtgtgagagtgtgagagtgctTGTCGGTTGGCATCGGTGAGAGCCGTCTCCCTTCCCTCCGTCAGGATGTTTGCAGTTCAGCTGCTGCTGGTCCCGCTGGCGCTGTGGGCTCTGCAAGCGTCTCTATGCCATGGAGCGTGTGTGGAGGTGGACTCTGACACTGACGCAGTGGTCAATGAAGGCTTTAAGCTGGGCTGTATTTCCTGTAAGATGAGGGGCGAGGTGCCCGCCGAGGCCACTGTTGAATGGTCCTTCATGCCCAAAGGAGAGAGCGAGTTCACAAAAATCTACAGCTACGAGGACCTAATGAGCGACATTCCGGACGAGCGCTTCTACGAGCGTCTGGACTGGAACGGCAGCAAGAAGACCAAGGACCTGCAGGACGGCTCCATCTACATCCTGAACGTGACGTGGAACGACACGGGCACCTACCGCTGCATCTTCAACCGCACCCTCACCTTCACCTCCTACGAGTTCCACACCAACGCCACCAAGATCGTCCAGCTCAACGTGGTGCCAAGACTGACCAGGGGGATAGCGTCCATCTTGTCTGAGGTGATGATGTATGTCACCATCATTGGGCTGCAGGTATGGCTGGTGGTAGAGATGATTTACTGCTACAGGAAGATATCAGCACAAGGCGAGGAAGCATTGAGAGAGAGCGCggcGGAGTACTTAGCTATAGCTTCGGAGAGTAAAGAGAACTGTGCAATGGTGGCAGTGACAGAATAACACTGGTTAAAGAATGGCTCCAAACGACGAATAGCTCTCGATAGCCCTTCGACACTTCACCCCTTCTTCCAGACTTCCATTATGACACCATCTCATTACCCCATCCAGGAGGAGCAGCCAAGAGGCTTGTCCAGAGAACAGATGGATGAGAAGTGAAACAGCcaatgaaaaatgacttgtgttgaAAAGCAAATATACAGCACGAGTGTACTATCTAGCAGTACTATAATATCAAGGAGAGTTGTAAATACAGTACGTGTGCTTAATTATGCAATCCAAAATCCTCATTGTAATACTGATACATTATAATAAGTTAGTTCACACATAGCATTGTACATTAAGTAGAGCTGCATGTTTACTGATACATCATAACTAATGGCGTTAATGTTTCTTAAAGGGTCATTGTCAGGATTCTAAAGTGTGCTTGTATGAGAGCAATTAGAGGTCAGAACTCAACTGTGATCTTGCCCAATGGCTTTAGTAGCCTGTCTTGATCAGACCTTCCATGGCTATTTATGTGCAGGTCCAGACTAGCCTAGCGGTATATTCAAAAACATTCCAAGAAAACTTGAGGTTATGCATTCAGGTGAATGAAATGAGTACCCTGAGGAGTAGTAGCCTAACACGGTTGACTAGCTGGGAGTAATGGATTGTACACACCCAGAGCAACTATTTCTGGTTTGACAGCATTTGTCTACCTGTTAAAAAGGTTAATGCTTTATTTGCTAGATTTTCCTTATCATATTTACAACAACCAAGGGCTTGTGATATTAGCTACCATTTTCCTGCCGTGGGAAACTACCATAATTTGTCCAGTGTGCCTGTGAGCAGGTATGTCTGACTGGTCAAAGACCAATCCCTAAGGAGCAGAATACAGTTAGCTGctattgaaaaaaaaatactGGACATCCCTGTCATTCCTGTTTGGCAGTCAATTCTGTATTATACCTCTAGGGGCAGCATAACACTGCCTAATGTGGACTGCAATCTTGCACACATACTTTCTTATACAATTTCATTGGGATCTGGGTTTAACTACTAAGGGGTCTGGGTTTTCTACCTTTGAAGTACGGAAAAGTGAAAGAATAATAGGATTGTTATGGCATGATAACTGCCACACGTGAACAAATTGTAATTAATGTTCAAGATTCGGAATGATTCAAAATTCCCTTTAAAAAACCTTGAAGCTGGTTTGGTCAGATTAGAGATTCTAGTCACCTTTCACAGAACTTCTACATTGAATAGCGGAATATATGTTGGAAAAAAAACAACAGGGAATAATCGACTTCTGCTGTAATTcactgaagaagagagagagagaaagagagatccaGCACACACTACTGTGGAAATGTTGCTTGCCAAAACAGTCAGCTTTATACCTTAATATAATTGTCATGTGAGAATGGAGTAGGCTTTATGTCTGGTTTATTAAATCAAAACAATTTCTACCTTG

Function

NR:

description
sodium channel subunit beta-1-like

GO: NA

KEGG:

id description
K04845 SCN1B; voltage-gated sodium channel type I beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560672.2 True 3877 mRNA 0.44 6 35240548 35265648

Neighbor

gene id symbol gene type direction distance location
si:ch211-225p5.8 LOC106605232 coding downstream 35420 35199344 ~ 35205128 (-)
LOC110488360 LOC106605226 coding downstream 66355 35158483 ~ 35174193 (-)
LOC110534832 dhx16 coding downstream 118231 35108207 ~ 35122317 (-)
LOC110488316 LOC106605221 coding downstream 133662 35103868 ~ 35106886 (-)
LOC110488311 mgat1 coding downstream 141027 35096514 ~ 35099521 (-)
LOC118939540 NA coding upstream 42094 35307742 ~ 35324682 (-)
LOC110488508 LOC106605236 coding upstream 82195 35347843 ~ 35357991 (-)
LOC110488492 LOC106605237 coding upstream 101184 35366832 ~ 35380061 (-)
LOC118939553 LOC106582593 coding upstream 341893 35607541 ~ 35609429 (-)
LOC110534863 LOC106605168 coding upstream 343981 35609629 ~ 35610797 (-)
G136340 NA non-coding downstream 48877 35191088 ~ 35191671 (-)
G136332 NA non-coding downstream 64359 35175646 ~ 35176189 (-)
G136319 NA non-coding downstream 98819 35141550 ~ 35141729 (-)
G136318 NA non-coding downstream 99110 35140408 ~ 35141438 (-)
G136317 NA non-coding downstream 112526 35127790 ~ 35128022 (-)
G136433 LOC106605238 non-coding upstream 157218 35422866 ~ 35538723 (-)
G136432 LOC106582469 non-coding upstream 160590 35426238 ~ 35426969 (-)
G136435 NA non-coding upstream 163351 35428999 ~ 35477440 (-)
G136437 NA non-coding upstream 228169 35493817 ~ 35498313 (-)
G136539 LOC106605190 non-coding upstream 287400 35553048 ~ 35572904 (-)
G135575 NA other downstream 636070 34604215 ~ 34604478 (-)
G134668 NA other downstream 1374611 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 2015446 33208500 ~ 33225125 (-)
G134102 NA other downstream 2452427 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 2488970 32738829 ~ 32756992 (-)
G136399 psmc4 other upstream 40719 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 408650 35674291 ~ 35700846 (-)
G137479 NA other upstream 1104356 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 1368545 36634193 ~ 36639005 (-)
G138080 NA other upstream 1560218 36825792 ~ 36828397 (-)

Expression


Co-expression Network