LOC110488465 (psmc4)


Basic Information

Item Value
gene id LOC110488465
gene name psmc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35294099 ~ 35307452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560689.2
TGTCGCTTGGGTCCTTACGTAGTACGTCGCATGATAGGGAATTTAACATGGAGGACATTGGAGTAACTGTTGAAAAAATTCAGGACGAAGTGCCTGCCATGCTGAACTCACGACCCCAGACGGGGCTTTCTTTCTTGGCCCCAGAACCAGAAGATCTTGAAGACCTTTACAGCAGATATAAGAAGCTGCAGCAGGAGCTGGAGTTTCTGGAGGTGCAGGAGGAGTACATCAAAGATGAACAGAAGAACCTGAAGAAGGAGTTCCTCCACGCCCAGGAGGAGGTGAAGAGGATACAGAGTATCCCCCTGGTCATCGGGCAGTTCCTTGAGGCTGTGGACCAAAACACAGCCATTGTGGGCTCCACCACAGGCTCAAACTACTATGTGCGTATCCTAAGCACCATCGACAGAGAGCTGCTGAAGCCCAATGCGTCGGTGGCCCTGCACAAGCACAGCAATGCCCTGGTGGATGTGCTCCCCCCAGAGGCTGACAGCAGCATCATGATGCTCACATCAGACCAAAAGCCGGATGTGATGTATGCTGACATCGGAGGGATGGATATCCAGAAGCAGGAAGTGAGGGAAGCAGTGGAGCTTCCACTCACACACTTTGAGCTTTACAAACAGATTGGCATTGACCCGCCCAGGGGGGTTCTGATGTATGGGCCTCCTGGCTGTGGGAAGACCATGCTAGCCAAGGCTGTGGCTCACCACACAACAGcggcGTTCATCCGCGTGGTAGGCTCCGAGTTTGTGCAGAAGTACCTGGGCGAGGGCCCCCGCATGGTGCGTGACGTCTTCCGGCTGGCCAAGGAAAACGCACCCGCCATCATCTTCATCGATGAGATCGATGCCATCGCTACCAAGCGTTTTGATGCACAGACTGGAGCGGACAGGGAGGTGCAGAGGATTCTGCTGGAGCTTCTTAACCAAATGGACGGCTTTGACCAGACCGTCAACGTCAAGGTGATCATGGCCACTAACAGGGCAGACACCCTGGACCCCGCCCTCCTGCGCCCGGGCCGTCTGGACAGAAAGATTGAGTTTCCCCTACCTGACCGCCGGCAGAAACGCCTGGTCTTCTCCACCATCACCAGCAAGATGAACCTCTCTGAGGAGGTGGACCTGGAGGACTATGTGGCCAGACCAGACAAGATCTCCGGAGCAGACATCAACTCTATCTGCCAGGAGGCTGGCATGCTGGCTGTCCGTGAAAATAGGTACATCGTCCTGGCCAAGGACTTTGAGAAGGCCTACAAGACTGTTATCAAGAAGGATGAGCAGGAGCATGAGTTCTACAAGTAGAAAGTAACCCCACCCCCACttctccattaaaaaaaaaaaaggcatttaGACACACA

Function

symbol description
psmc4 Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Predicted to be active in synapse. Orthologous to human PSMC4 (proteasome 26S subunit, ATPase 4).

NR:

description
26S protease regulatory subunit 6B-like

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03063 PSMC4, RPT3; 26S proteasome regulatory subunit T3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560689.2 True 1360 mRNA 0.54 10 35294099 35307452

Neighbor

gene id symbol gene type direction distance location
LOC110534843 LOC106605230 coding upstream 54854 35205181 ~ 35239245 (+)
dnajc28 dnajc28 coding upstream 98246 35187825 ~ 35195853 (+)
LOC110488391 LOC106582385 coding upstream 110097 35180650 ~ 35184002 (+)
LOC110488375 LOC106605227 coding upstream 113633 35172574 ~ 35180466 (+)
lypc LOC106584559 coding upstream 140464 35151760 ~ 35153650 (+)
LOC110488474 LOC106605235 coding downstream 17824 35325276 ~ 35334443 (+)
LOC110488522 lsr coding downstream 88883 35396335 ~ 35405972 (+)
LOC110488530 LOC106605238 coding downstream 99467 35406919 ~ 35431905 (+)
LOC118936739 LOC106605239 coding downstream 134689 35442141 ~ 35444030 (+)
LOC118936740 LOC106582469 coding downstream 137649 35445101 ~ 35454058 (+)
G136144 NA non-coding upstream 4455 35289377 ~ 35289644 (+)
G136097 NA non-coding upstream 93613 35199342 ~ 35200486 (+)
G136086 NA non-coding upstream 136062 35157832 ~ 35158037 (+)
G136079 NA non-coding upstream 148653 35143735 ~ 35145446 (+)
G136199 NA non-coding downstream 83616 35391068 ~ 35391284 (+)
G136201 LOC106584099 non-coding downstream 85856 35393308 ~ 35393788 (+)
G136202 NA non-coding downstream 87292 35394744 ~ 35395183 (+)
LOC118939544 LOC106605239 non-coding downstream 134278 35441730 ~ 35470406 (+)
LOC110488281 apom other upstream 293544 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 321298 34972449 ~ 34972801 (+)
G135916 NA other upstream 322168 34971640 ~ 34971931 (+)
LOC110488639 LOC106605005 other downstream 478239 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 547697 35855149 ~ 35865269 (+)
G136994 NA other downstream 675380 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 792159 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 1074440 36354883 ~ 36405310 (+)

Expression


Co-expression Network