LOC110488474 (LOC106605235)


Basic Information

Item Value
gene id LOC110488474
gene name LOC106605235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35325276 ~ 35334443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560697.2
CACTCCAATATCTGAAAATAATATctataagaaacatttcaaaggaTTTTGCACTTTTCATTCATATACCTCCATACCCATTGCCTGTTGCACATGTCATACAGTTGCACAGTACCGACAGTGCACACTTGTTTACAGTAAAAAACTAGTGTAGGTTGCCAAGACTAACGAAGCCAAACATATCACCAAACCGCTCTCCCAAGGGTCCTTTGTTGTGACACAGCCGGTGACATGGCGACGTGGCTACAGTCAAAATGGCGCTACCTGTTCATGTTTCTGGGTGTCCAGCTGGTTGTCATGGCGCTGCTGTCCCGTGAGGGCTACCACAAGCGAGTGTCATACTTCATCAGGATTTTCCGCAAGCTGGAGACCACTGCGACGGGGACGTTCGGTGCCGGCTCTCTCCACGCAAGCAATCACACGGGCGGTGATGTCTACGCCAACTTGTCCCTCCTGGCCAAGGCCCACCACGGCCGGGGCGAGGAAATGCCCTACTGCCCCAAGACGTCTCCCCTGATAGGTGGACCAATCCACGTCATCTTCCCCTCCGGGTTGACACTGGCCCAAGTGGTGCGGAAGAATCCTTTGGTGGTCCGCGGGGGGCGCTACAGGCCGCCTGACTGTGAGGCGCGGCACCGCACCGCCATAATAATTCCCCACAGAAACAGGGAGCACCACCTGAAGTTCCTCCTCTACTACCTTCACCCATTCCTACAGCGACAGCAGCTCAACTACGGCATCTATGTCATCCACCAGGCTGGTAACTACACATTTAACCGGGCCAAGCTGATGAACGTTGGGTTCCGAGAGGCCATGCGGGAGGAGGACTGGGACTGCCTGTTCTTCCATGATGTGGACCTCATCCCTGAGGACGACCGCAACACCTACATGTGCGATGCCAACCCCAAGCACACCGCCATTGCCATGGACAAGTTTGGATACAAGCTGCCATACAAGATGTATTTCGGAGGGGTGTCAGCGTTGTCTCCACTGCACTACCTGAAGATGAACGGCTTCCCCAACAACTACTGGGGCTGGGGAGGAGAGGACGATGACATTGGAGTCAGAGTATCCCTAGGAGGGATGTTCATCTCTCGTCCATCGGTGAAGGTGGGCAGATACAAGATGATCAAACACAAGCTGGACAAGGGAAACGACGTGAACCCCAGGAGgTTCAACATGCTGGCCAAGACGCGTCAGACGTGGAAGCTGGACGGCATGAACACGGTGGAGTATGAGGTGCTGTCACGTGACTACTTCCCCCTCTACACCAACATCACTGTGCACATCGGCACAGAGGCAGGCCTGCATGCCACGGCTCCGTCCCCCAAGAGCCTTGCCAAAGCCCCAGCAAAGCCGCCAGTCGAAGCTCCCGCCAAACCTCCAACCAAGCTCCAACAGAAACACTGACTTGGACCAACTTTACCCACTCCACTCCCATCCTCCACCCTCCTGCCGCCGACTATCCCCTCCTAACTTATGCCTGGGAGCAGGGATGTGACAGAGGGGCCCTTGGCCCTTAAAGCGCTCCTTTCTTTGCCTTCACCCTTCAACTGAACCTCATATCAATGCCTACaggtggcagttagcctagtagttagagcgttgggccagtaaccgaaaggttgctagatcgaatccccgagctgacaaggtaaaaatatgttgttctgcccctgatcaagacagttaacccactgttcctaggccatcattgtaaataagaattagttcttaactgacttccagTCGGGAGAGGTGGGTGGCTCTCCCTATTGGACTAGAGGCCATGCCTTTTCCTTCTGTTCCTTCCTCTGATCTGATCAGCATTCTCAACTGAAACTTTATCAATAGTATAGCAGAGACTTTGAACTTGAAGACCAATGCTCTCCACTGCCTAGATAGAATCTGTGGGCCGAGGCTTTGTCTGTCTGAATGAATTACTGTAGCATTCTCCACCCTAGTTCTGATTTTCCAGCTATATCTCACCACTCCACTGACTTTGACTCTATGAAAGGGACTTAtggtagaggagaggaaaaaAGACGGACTCTATGAGTTTATAACGCTGCCGAAAACCCCCGTTGCCTTAGAAAACCTGTCTTGTTCTATTTTTCCTTTTTAGTAGAACTTCAGGTCGAGAGTTATGAATGAAACCGGTTTGTAGTGATAGATAGCGAGATTAGGGGAtagaataaataaatgaaaaaaacattttatgcTACTGATATTGCAATAGCATATGGGTCTTTCTGCCAATTAGGTGCCTTTTTTGAGTAGTGTGAAACTTGATTTCACCCAATTTTAACAATCTgccataaagagcacatgttcaaaaCACGTTTTCCCATCTtgaggttaaattaaataaatgatcatagtaagtgccaaataaagtaacagggttgaccgtaacagggttaaatcagccataaatccccttgtgacagagGAAATGGAAGCTTGTGGTGTGTGCAACAGAGAGGGGCAATTTAATGCAAATTAAATTGttcaaacatttctagcctgtctatatATGGGTAACAGGGTAGACGTGTTATGTTCAACCGGCTCTGTTTTCCACAAAAAAACACCAGAAATTttccaaaaagagtagaaccagctcacctgcttgtACGCTATGATTTGACTAGAGAAATATTTACAAAGGAATTTCATCATAgtaaaacgagagttcagtttttttttactttaaaatgaatcactaatcacatgaaataatgACCTCTTCAGAaattactttgtcaaagcaacaaaataactagggctttcaaatgaagtgggttaaaatcttcctagaagtcacaggaTGCTTAGAGGGaaatgtcaaaatgctgaattttggcaGTTTAAATGGTCTTTATTCATATTAAATCAGATTTATAAAAGGTTCCATGTTCCACTTAATATAACAGGCGTTTAATATTTGTAACTGGCACTAATTTCGGAACGACCCATATGTAACTGATTTTACAGTTTAATATTATACGAAGTGAAGCTGCTCTCCTGAATATTGACAGGGGTATGTGCTGTTTGCAGTTAGCATGGTAGTCACCCCCTGAGTAGgagtgcagatctaggatcaggttctcTGTGTTCATATTAAATTCATTATGACCTTAAAGGCAACCATGATCGTAGATCAGAACACCTAGTCTGAGGCACAATACAGGCCCTGAATATCAGGCTGATTTATTGAAGGATTTTCTCACAGTAGGTTCACAGTTCGGGCACAGCTTTTTGGTATGGTTGGGTTTCATCTTATCGCTACAATCAGAATGTGTATTTTCTCCAGTTATCTCCTTCAATCCCTAGATTGCGTTGATGTGGGGTTGCATTTTGCCTTGTGTCAAATAGAATAGTTGCGGGTGAAATGGTCAAATCACTGCCTTCAGGTGGGCTGGCTATATTCACATCAGATGGTTTGTCTTTTCAATTTGTGTTTTATGTATTATTGTTCATTACCTTATGGAGCTTTTATGTTGGTTTCCTATGATTGTCAATGTAGCTTAAAACTGAGGGATTCAAGTCCTAGTGGACTCTCCATAGTCAGAGACTTGGGATCTATCTCCATACTCTAAATTGGCTGAAAGGTTTGAAAACCAGGAACTTTGTCCATGGATGACCAGAAACCACTATAACTAATTAGGTCTATAAACGGAATCAGGCACTGGTAAGTGACATGAGAACTGATGCCTGTAGACTGTGTAGTACACTCATTGGTTGTACTGATTCTGCTGAACCACTGATTTAAAGATTGATATAGGTACACTGGGTTAGCATTTACAGCATTACCCCACTAGCCATTCTTTCATTTTGTGCTGTCTAAAATCTGTCACCCCTAGAATTCCCCAGTGCAATGTCCTCCTCACTGCATGGCTTGTCCTCTGACTTTCCTCTTTGCACACCGTCTCGACCCCCTGACCAATATGATTGTTTAATCTAGATCCCTACTGGGAATTGaacctctgtgtgtgtatcaCATAGAGGACTCATGCCACTTGGCTGAAACCAAAGATGGCTTAGAGAGAAAGCATTGGACGCCTGATAGTTGTGCTGGCGGATGCATGCTGACATGGGAATAGATGGGATTCCACTTACTCCGGGTATGctgagttttgtgtgtgtgtgtgctactatCTGATCTAGGAATCTCTTGGATGACCTTCTTCACTATGTAGGCTGTCTTTACCTTTTCTACTCCATATGAAGCCTGATTATGCATGACACACAGACCCTGTATTAGATGAGTGGGATGTACAGAGAACCACACACAGACCACTGACATGACTTCACATTTGAGTCTCCTGAAGCATGCTACAGTGTATGCTTGTGTAGTGATTCGTAAGACGTATGCTACATGCACCATGTACCTTTTTAACACTTCATGCAGTGGTTTATTATGTCATATCATGTCTATTTGTACTCTTCAGTTTGCTTCAGTTGATGTATAACTTGACTTTTACTCCATTATGATGTGGGAATGCTGTCCAGGGTGACTGCGCCAGGAGATGGAGCTCACCGCAGGGCATTGGAAATGTAACAAGGACAATGtgatactgtatttctgatttaaTTCCTCCTCTCTGAATGAAGTCTGCACAGTCCAGAGTGGCCTTATACAACGATTAATAAACAAAAAGATTAGTCAAACACTGGTGAAGTGGATAAA

Function

NR:

description
beta-1,4-galactosyltransferase 3-like

GO: NA

KEGG:

id description
K07968 B4GALT3; beta-1,4-galactosyltransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560697.2 True 4693 mRNA 0.45 6 35325276 35334443

Neighbor

gene id symbol gene type direction distance location
LOC110488465 psmc4 coding upstream 17824 35294099 ~ 35307452 (+)
LOC110534843 LOC106605230 coding upstream 86031 35205181 ~ 35239245 (+)
dnajc28 dnajc28 coding upstream 129423 35187825 ~ 35195853 (+)
LOC110488391 LOC106582385 coding upstream 141274 35180650 ~ 35184002 (+)
LOC110488375 LOC106605227 coding upstream 144810 35172574 ~ 35180466 (+)
LOC110488522 lsr coding downstream 61892 35396335 ~ 35405972 (+)
LOC110488530 LOC106605238 coding downstream 72476 35406919 ~ 35431905 (+)
LOC118936739 LOC106605239 coding downstream 107698 35442141 ~ 35444030 (+)
LOC118936740 LOC106582469 coding downstream 110658 35445101 ~ 35454058 (+)
LOC118939544 LOC106605239 coding downstream 131823 35441730 ~ 35470406 (+)
G136144 NA non-coding upstream 35632 35289377 ~ 35289644 (+)
G136097 NA non-coding upstream 124790 35199342 ~ 35200486 (+)
G136086 NA non-coding upstream 167239 35157832 ~ 35158037 (+)
G136079 NA non-coding upstream 179830 35143735 ~ 35145446 (+)
G136199 NA non-coding downstream 56625 35391068 ~ 35391284 (+)
G136201 LOC106584099 non-coding downstream 58865 35393308 ~ 35393788 (+)
G136202 NA non-coding downstream 60301 35394744 ~ 35395183 (+)
lypc LOC106584559 other upstream 171626 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 324721 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 352475 34972449 ~ 34972801 (+)
G135916 NA other upstream 353345 34971640 ~ 34971931 (+)
LOC110488639 LOC106605005 other downstream 451248 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 520706 35855149 ~ 35865269 (+)
G136994 NA other downstream 648389 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 765168 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 1047449 36354883 ~ 36405310 (+)

Expression


Co-expression Network