LOC118936739 (LOC106605239)


Basic Information

Item Value
gene id LOC118936739
gene name LOC106605239
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35442141 ~ 35444030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933778.1
ATATCCAATGTGTATTGCTATATGTTGTTATTCTCACAACACCATTTCATATTGTATTTCACACTCGTCTCCTGCTCCATACcagtagacacagacagagatagtgaccattagacaaagaggagaaagaggagagacccCGGTGTTGTGGTTGATTCATCGAGGCAGTAGAGGCAGGATGTGGGTCCTCATCTGGGCagctctacttctctctctgacagagaGAACCACATGCCAAAAGAAGGCCCCTGCAGCAGCATACAACATCACCTTCAGTCCAGCAGAGATAACACCACAGACTGGACTATGTGCTGTTATTCCATGTTTGTTCACTCACCCTGATGACTTCCTTGCTAGCATAGCAATGTGGCTTAAATGCCCTGATGCACGATGTTCTATTAAAGTCGAAACTGACTCTATTTTCCACTCAAGAAATTCCTCTATAGCTCAGGAGGGTTATAGAAGGCGAGTAGCACTACTGGAGACAGACCTGACAAAGAAGAACTGCAGTATGATCATCAACGACATCACTAAGACTGATGACGGAGACTATCAATTAAGACTGTCCGGAAAATTGAACACTGGCAATATAAGTCAATTTACATACCAGACGAAACTGAAAATGGCAGTGAAAGCTCTGACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAGCGACCCTGACCTGCACCGCCCCGGGAATCTGCTCTGGAACTCCTCCTAACATCACATGGAcatggagagggacaggagacaacatcactgagctcagagacaacaccactacacAAAGGAGAGAGGATCTGACCAGAGTCACAAGAACCCACTTCTCAACTTTGACCTTTACACCTTCAGCAGAGCACCACACCACCAAGGTCACGTGCCAAGTGACATTCAAAGGGAACATCACCACTGAGGAGACAGTGACTTTGAATGTGACTCATGTGAAGGAACCCAAGATCTCTGGTAGTAACACAGTGAGAGAGGGTGATACCCTGAATCTGTCTTGCTTTGTTGACAGctacccaccaccaccatctatcaCCTGGAGTAAGAATGGGACAACAGCTTTGGAAGAGAATAACTCTGGACTGGCCTCTCTCACCATCTCCAACATGACAAGAGAACATACTGGGGAGTATGTGTGTAAAGCTCATCAACTCAACAGGACGACTCTGACAGCTTCCATTGTTGTCACTGTGATGTGTGAGTACAAACAACACAAAATAGCTTGA

Function

NR:

description
sialic acid-binding Ig-like lectin 5

GO: NA

KEGG:

id description
K24329 SIGLEC14; sialic acid binding Ig-like lectin 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933778.1 True 1249 mRNA 0.46 4 35442141 35444030

Neighbor

gene id symbol gene type direction distance location
LOC110488530 LOC106605238 coding upstream 10236 35406919 ~ 35431905 (+)
LOC110488522 lsr coding upstream 36169 35396335 ~ 35405972 (+)
LOC110488474 LOC106605235 coding upstream 107698 35325276 ~ 35334443 (+)
LOC110488465 psmc4 coding upstream 134689 35294099 ~ 35307452 (+)
LOC110534843 LOC106605230 coding upstream 202896 35205181 ~ 35239245 (+)
LOC118936740 LOC106582469 coding downstream 1071 35445101 ~ 35454058 (+)
LOC118939544 LOC106605239 coding downstream 22236 35441730 ~ 35470406 (+)
LOC118939545 LOC106582469 coding downstream 28093 35472123 ~ 35477382 (+)
LOC118939546 LOC106582469 coding downstream 48787 35492817 ~ 35498083 (+)
LOC110488566 LOC106605239 coding downstream 62627 35506657 ~ 35512190 (+)
G136202 NA non-coding upstream 46958 35394744 ~ 35395183 (+)
G136201 LOC106584099 non-coding upstream 48353 35393308 ~ 35393788 (+)
G136199 NA non-coding upstream 50857 35391068 ~ 35391284 (+)
G136144 NA non-coding upstream 152497 35289377 ~ 35289644 (+)
LOC110488573 LOC106605190 non-coding downstream 104518 35548120 ~ 35554239 (+)
G136554 NA non-coding downstream 130094 35574124 ~ 35574329 (+)
G136561 NA non-coding downstream 133928 35577958 ~ 35578281 (+)
G136573 NA non-coding downstream 141999 35586029 ~ 35586280 (+)
G136583 NA non-coding downstream 150505 35594535 ~ 35594840 (+)
LOC110488391 LOC106582385 other upstream 258145 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 288491 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 441586 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 469340 34972449 ~ 34972801 (+)
G135916 NA other upstream 470210 34971640 ~ 34971931 (+)
LOC110488639 LOC106605005 other downstream 341661 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 411119 35855149 ~ 35865269 (+)
G136994 NA other downstream 538802 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 655581 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 937862 36354883 ~ 36405310 (+)

Expression


Co-expression Network