LOC118939545 (LOC106582469)


Basic Information

Item Value
gene id LOC118939545
gene name LOC106582469
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35472123 ~ 35477382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947081.1
CTTACCTCCACCCTCTCTTCAGACGCCCCTGTCCTTCTGGAAGAGTCCAAGTGCACAGTGGTGAGGGAGGGAGTCCAGTGTGTTTGCATGGCTACGGGTAACCCTGAGCCCATCATCGAGTTCTACCTCCCCGACAAGAACATCACCATCAACGACACGGACGGCCGCTACAACTACTACACGCACACGGACGGCCACACGTCCACGGGCATGATAAAACTACGGGAGAAGGGCGAGCGCCTGGGCAACGGTGCTGTCAATGTGCACTGCAGCATCAGCAACATATACGGGTCGGAGAGCTTTCATCTGGAGTTACAGCAGGAGAAGAAGTACATGATGGCAGTGATTGTTGGCACCATCGGTGGAGTGGCTGTCATCGCCTTCATCATCGCAGCAGTGAGATATGTGGGCCATAACAACAAGAAAGAGAATGGCAACCCTGGGCAGGACCTGGTCTCTAAACTGGAGAAACAAGCGTTGTACTACAGCACAGTCAAGAAGGACAAACAATGTCTGAGGAAGAAAGTGCTTAAGACAGAGCTTCTGGGCTCAAAGTTTAACTCCATTCTAGAGGAGAGCACGGGAGAAGACGGGGATTATCAACCTGTGGGCTCTATGGCAGACCTGGAGAGGCAAGAGCTGAATTACGCCGCCCTGCAGTTTCTCGGGGGGCGCTCCAGGGATGGGGGGGCCTCAGGGAGGGGGGATGACGGCAGCGACTACACCGAGATCAAGGCCAAATGAATCGCGATCCTTCCCTGACCCATCGTCACCGCGGGACACAGTGGCAGCCATGTTGTCGCCCCCCTCCTCACGTCATTCGCCCCCTCTTCAAACGTCTTCCCCCCTCCCCCGTAGACTCCACCCCCAACCTTCACCGTCACACCAAGAACTCCCACCGTCTCCGCCCGTCCCTGAATCATCTCAAATGACGTCCCCGTTAGTCGACCCCCAAGCCTCCAAGGGGAACCCCAGTCACATCTCGCCACCCAGGACTGCTGGTAGCTACTTGCAGGGTCAGAACACGGCCCAGTGGACAATGTAAAAAGATCTTTGTATTATCAGCAGCTGTCGGTCTCCAGGCTCTTACTCTATTGTTCATAGTCAAACAATTCCCTCACAACAGGTGCAATGCgttagttactgtactgtatcatctAGATTCAATGTTGCTATTTCCATCTCTACACCATTAATTGTTGGCATTGCTTTTCTGGGGCTCCCCTTCTGTATGTCACCCTATATCATACTCATagctagcctggttaaaccagattGAACGCTGAGCTCACCAGTTTTCCTGTGAAACGCAGCGCAATCAGTTTGGATACCAGGCTAACTGTCTAGATCCATCCGTTATAGTTCTTCTCCACTGTGTCCGCTGCCAGTCGAAGTGTCAGGGAAAGGGGTGTGTTTTGTGCTTTTTCTTttcttatctctatttctgacccTGGATCTGGAGGAAATGAGggatctcttctctcttcctgatCCAGTGGTTGTCAACGCTGACCAGTGTTCAACAAACGTTAGGCCTGAtacacatccaattgaagccTGTCATCTTCATCTCACATATTCTGTTCCAACATATAGTTCAATAGTGATGTGTGCTGTGACTCTGTGGCTTTTGATGATGATGAGAAATGAATATTTCTTTGATTTTATATAAAGAGAGAAAATTGATACTCTTACAGGTTTGTGGAGCCTCGAACACAAGGTTCTGCTCGTGCAAGAAGTGGCCtgaatatttttgtttttatgcATTATAAGCACTGATTGCATTGTGTTTTGCTCTTGTGGAAATATGCCGGGGTAACACAGAATGTTCTATTTATTCCGTTGCCCATGATTTAATTACTAGTATTTTTGGACGATGTTTTGCTAAGGGTAAGTGTTAACTTATCCTTAAATGGGAACCAATGGATTAGAATACATTTTTGGATCAATCTGGCATACATGACTCCACTGTAACACTCGCACAGCAGGACAAAATGTATCTCGTtgagacaatgtgtgtgtgtgtgtatgtaaacagTGCTGAAAGATCAGCGAACACTGATCACTGTGGGTGTTTCAAAAGATCACTTTACCTGAGACCGCTTCTCACAAAATGTCTACTTCAATGGTTGTGAAGTGTGAAATCGATGCCTAATCCTATAGGGTTGTATCAGAGGAGGCATTTGAGTGGCACAACATTGAAGTTGTTATACCAGTTGGTTGTGCTATTCAAACATACTTGATCAACTCATGTAATGTAATCTCCAAGCTCACTAATGGCAACACTAGATAACAATGACTGTTAATACAATATTAATAAGCTGCATATGGATGGGTAAAAAGATACTAGTATACATTATGTAAATAAATACCCTGCATGACTATTATGCTGTCAGCCATATGTGTAGATACACTACGGTATGTACATGTTCACTATTGCAACAATGGTTTACACAGGCAAGTCGGATACAGGTTCGGTAACACTTTAACTGACTTCTCTGTCATAAGGGTGACATAACGctgtcataacataacacatgTCATTTTCGGTCATGAAAACTGATGTCAAAATACTGACAACCCTTTACACTGTCATGACACAAATGGGTATTTATGTAAATTAGTTGGCTAGCGGTATGCTAAGCCAATAACCTGACTGAAGCAAAGATTTGTGCCATGACGGTGTCAAGCTTATGTCAGCTGTCATGACTGTTTAATAACATATTTTATGTCATTGTTCTGACATGGTTAAGTCACTAGACCTAATGGCGGAGCGTTCAAGATGTGTTGCCCAACATTGAGACATGCCAATATGGACATCCGTTTAGTAACACTTACTGTCGTCAGTTCTCTTGAACGCCTCATGGGGGGGTTTATTTCTTTCTAAACCTGGGAACAAAATGGAGAAGCGTTGTTCATGTCTTCTCTAATTTGTTTGTCACATAGTGTGTTGTAAAGCAGATTTGTACTTTCTTTACTTTGTggtattcattattattattgtgatgattttttttttatatctttgACACAATAATTCCGATCAGAATTCTGCAATCCTTCTGCAAATTAGCACTGTTATTACTTAATGACAATAAGAGCTCTATGATGATGTTTGATCATTCTCTTTCTTTTACAAGTCTGTCCCGCCTCAAGCAAAGCCATCTTTCTTTGGGTCCAAACAACAAATAAATCAAGTAAACAACAGAGAA

Function

NR:

description
myelin-associated glycoprotein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947081.1 True 3212 mRNA 0.45 5 35472123 35477382

Neighbor

gene id symbol gene type direction distance location
LOC118939544 LOC106605239 coding upstream 1717 35441730 ~ 35470406 (+)
LOC118936740 LOC106582469 coding upstream 18065 35445101 ~ 35454058 (+)
LOC118936739 LOC106605239 coding upstream 28093 35442141 ~ 35444030 (+)
LOC110488530 LOC106605238 coding upstream 40218 35406919 ~ 35431905 (+)
LOC110488522 lsr coding upstream 66151 35396335 ~ 35405972 (+)
LOC118939546 LOC106582469 coding downstream 15435 35492817 ~ 35498083 (+)
LOC110488566 LOC106605239 coding downstream 29275 35506657 ~ 35512190 (+)
LOC110534853 NA coding downstream 48704 35526086 ~ 35540448 (+)
LOC110488573 LOC106605190 coding downstream 70738 35548120 ~ 35554239 (+)
LOC110488583 LOC106582465 coding downstream 89820 35567202 ~ 35573160 (+)
G136202 NA non-coding upstream 76940 35394744 ~ 35395183 (+)
G136201 LOC106584099 non-coding upstream 78335 35393308 ~ 35393788 (+)
G136199 NA non-coding upstream 80839 35391068 ~ 35391284 (+)
G136554 NA non-coding downstream 96742 35574124 ~ 35574329 (+)
G136561 NA non-coding downstream 100576 35577958 ~ 35578281 (+)
G136573 NA non-coding downstream 108647 35586029 ~ 35586280 (+)
G136583 NA non-coding downstream 117153 35594535 ~ 35594840 (+)
LOC110488391 LOC106582385 other upstream 288127 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 318473 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 471568 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 499322 34972449 ~ 34972801 (+)
G135916 NA other upstream 500192 34971640 ~ 34971931 (+)
LOC110488639 LOC106605005 other downstream 308309 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 377767 35855149 ~ 35865269 (+)
G136994 NA other downstream 505450 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 622229 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 904510 36354883 ~ 36405310 (+)

Expression


Co-expression Network