LOC110488583 (LOC106582465)


Basic Information

Item Value
gene id LOC110488583
gene name LOC106582465
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35567202 ~ 35573160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560852.2
CAGCACCAGGTTGGAGGGAGAAGTAACAGACTGAGGACATGAAGTGACAGCTCACACCCATCAGAGACTCACACAGGGCTCACAGTCAACAGGAAGagagagcacacagagagagAGCTGTGGACACAGACAAGGAGACCATAGAAAGAGGTGAAAGAGGACACATCCTGGTGTTGTGGGTGATTAATCGAGGCAGTGGAGGCAGCATGTGGGTCCTCATCTGGGCAGCTCTACTCTTCTCTCTGGCAGAGAGAGCAACATGTCAAAGACAGGTCCCTACTGCAGCAGCTCCATCAGCTGCAAACACAAACAGCATCATCTTCAGTCCAGAAGAAATAACAGCACAGACTGGCCTATGTGCTGTTATTTCATGTACTTTCAATCACTCTGATAGAGTCAAGCAGAACGCAGCAGTATGGTACAAATACCCTGCAAATGGCAAACGTAAAAAGGTTAATCATATAATTTTCCACTCCAAAAATTCCTCTAAAGCTCAGGAGGGTTATAACCACAGAGTGTATCTACTGGAGCCAGACCTGACAAAGGGGAACTGTAGCGTGATCATCAACGACATCAGAGAGAATGATGCTGGACAGTATCAATTCAAAATTAAAGGAAGAACATTTAAACTCACAGTAACAGCTCTGACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAGCGACCCTGACCTGCACCGCCCCGGGGATCTGCTCTGGAACTCCTCCTAACATCACATGGAcatggagagggacaggagacaacatcactgagctcagagacaacaccactacacAAAGGAGAGAGGATCTGACCCGCGTCACAACAACCCACTTCTCAACTTTGACCTTTACCCCCTCAGCTAAGCATCACGGCAACAAGGTCACGTGTCTGGTGACCTTCAATGGAGGCGTCACCACCAAGAAGACACTGAAATTGAATGTGACACAGGAAGTATCTAAAGACATCTTGGCTATGCTGTTGAACCCACCACTGATTACTGCATTTGTGATTGGTGCAGCCTGCTCAGCCACCATCGGTTGTATCATCCTGTGTTTCACAGGGAAAAATAAAAAGCGCAAAGAGAGGACCCCAAAGAACTCAGACTCCAAAAGCCCTTTCACGAACCTGGAGATGGTGGCATGTGAAGACCAACAGAGAGATGCAGGACAGGCAGTGATGGGCGAACAGACACATCTGCAGGTGGAGCTGAGGGAGGGAACTGAAAACGGAGGGCTCCAGACCAGTGGAGCTGCGGGACACTCGGCCCCAGGGGAAGAACCAAAAGAGGTGGACTACGCCAGTATCAACTACTCCCTACTGAAGAAGAAGACACCTGAGGAGGCAGAGAAGAAGACCACTCCCACAGAGTCCGACTACGTCGAAATCAAACGAGAGAAGAAGAATGAGGGGGGAAAAGATGGTGGAGAGGGGAGTGGCGTGATGGAAGAGGTggaaggggagaagggggaggagatgaTAGGGAAGGACGTGGAGAACGAGAACGGTAAGCCAGTACGAGAGACAGATGAAGATACAGCACTTTACTCCAACGTCAAGGCTATTATTGGTGGAGAGTGACACAGCAATTTTGTCTAAAAACGTGGGAGATAGCACACAGTACTATCGCTTCTATTATACAGCACTGCTGTGTTTTCTCATATTCCAGACTGAATGTTTTATGATGATACAGAGACTTTGTTTAACTAAAGCTACTGTGGGTAATAGTTTTGGTACTTCTTTATTTTTCAGCCCTGTGTCAGCTGAAGCAAGTATTTCTGGGAGGGTTATACATATTTTTTAAGGAAGTTCATGTAATGTTACTTTTGTAATGATTCTGTCTTGTGTCACCATGGGAAGGACTGACAAAGACATGGTTTGGAGAAGTAGAGGTCAAACCATTTCATGTTTTGGCATTTTGATTTAATCCTAAACCTATTTATTGAGGTACTACCTTACTTTTGATGGTTGTGTGTATTTATAAATGTATGAGGAAAAGGAAGTAACCAGCACATTGCCCTTGATAGTAccactgatctttaataagcttttgtgagttttttaaaatagcacccttatgtagacctagccccacccacatccgttccacgCATCGAATGGGGTTGGAGGCAAGGTGAAAAACAAAtcagtgctaccaaatataacaatatgcatttcataaatattcgaataaagtgtgtacataaaacgtattaaaacacgtctgtaaaaccacaatgaggacatcaACCTACCAAGCAAGTTTTCATAAATCCTTGGGTACAGTGTAAGAAAAACGTCAGAGTAATCTGAAATAGGGGCATAATTCATTTTCAAATGTACAACATAAAATACATAGGCATTTCAAATTTAAGACCTTAAGGAAATAGTGTAtggagggtgaaaatcccaaaacattctcCTTTGCTCAGAGTATTATTTATCtcacctcccctgtctgatatcttaaccttctctatgccacaaaatctaaagGTAGAAATGTCATGTTTAGGTCATTAGAATGTACTGCGACTGTATAATCCCGGTCGTTTCTACTAATTGAATTTGTATGTTCACTGATTCTCTGTTTGAGAGAACGATAGGGTTTTACCTACATAGcacagcccacatggacatttaataatgTAGATAACATGAGTGGTGGCAACACAATCTCACATTCAATACGTGCATTTGTGTACATAATGCATTTTAGCAAATTGTGTGCGTATTTGTGTTGCTTAATTCGTGAGAAAATACACGAATTGATGTGCTACTTATTTCGTTCGAAAAGACTaatttaaccactaggctccaTACAAGCCTTTGCAAAAACCATTGACACGACAGCCTATATTTAATTGTTGTTCTTCTTTATGGCTAATTCGTCGTTATGAATATACAAAAATGTTGCCTTCATTTTATCCtgttttaaaatgtgtatttgtATGCCTATATGTACTGTTTTAGACTTGCTGAACAGAATTTGTGAGAAAATACACACATTACGTGCGACTTAATTCATGGGAAAAAAATTGTTTTATTAATGCCAATGCTGTTTTCTATGCTTGATTTCGTTTAATACTTTGGGATACTGGTGCACTTGTAATCAGAAAGGGCATTTTTTCGTATAGGCAACAGTACACGATTTTCGTCATTACGCATTACATATTTCGTGGAGCCTAAATTACACAATTGTCTTCATAATGCATTTATTACATGTTAAACAAgttaatgtaaaataatgaattatgTTGGCTTACACTTATGGCACTTCCAAGGCCTTTCCATGATGATTATTACGGTCATGCCAATCATGTTATATACTTAGGCTACTGTAACGCGTTCAAACCGTTAGCAAGTCAGAATGTCAGTTTCCAGGTACCGACGAGCACTTAAACGCTGTATTATGCTGGCTTCACATTCTCGTGGGAAATGGGAAGTTGTAACTCCGACATGATTGTGTTCAAGTGCTTTTGAATTCGGAACAATGTTTAAACCGATAAGATTGGCAATATAATTTTCTAATTTCCCACTTGTTATTCCTATTTGGGGGGTCATTCAAGTGAAACATCCCAGTAGGAACTAGGAATTTCTGAGAACTCCGATAGCATTTGAACGAGGCATTAGTATGTGTAATAGACAACAGTAGGGTCTGGGTCGCAGGGTGTCCAGCCCTCATACCCATTCACGACCACCGCGGAGCGAGTGTCAGTAGCCTACTGTGTGTCCGTAAAGTCAACTAGTATAATTATTGTTTGTGAAGTAAGTATGGTGATTATTATTAAGGTTCTGGTCGTCTGAGATTCCAACAGGCTATACAACAAACAGTATAACTATAGAATTAAGAAACTAAGTAAATAAAGTAATAATGAAATTAATGCACAAAATAAAATATAACATTGACAAATGTTTGGTTGCTTTAACATATCTACACAATTCTATTTTCAAGAAGCGGTACCAATGTTTAGCCTACATCCAATGTCTAGGCTACTGTCTTCAGatgtcttattcgactagtagttgttctgaaatgtttattgcttgcctacattttactccatcctctatgtttaatataacacacacatacatgaattATTAATTTCGGGTATCCTACCCTGATGTGAAGTTTGTTCTAtggaaagtatttgactctgg

Function

NR:

description
myeloid cell surface antigen CD33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560852.2 True 4178 mRNA 0.41 7 35567202 35573160

Neighbor

gene id symbol gene type direction distance location
LOC110488573 LOC106605190 coding upstream 12963 35548120 ~ 35554239 (+)
LOC110534853 NA coding upstream 26754 35526086 ~ 35540448 (+)
LOC110488566 LOC106605239 coding upstream 55012 35506657 ~ 35512190 (+)
LOC118939546 LOC106582469 coding upstream 69119 35492817 ~ 35498083 (+)
LOC118939545 LOC106582469 coding upstream 89820 35472123 ~ 35477382 (+)
LOC110488622 LOC106605163 coding downstream 171067 35744227 ~ 35751886 (+)
LOC110488629 LOC106605006 coding downstream 186977 35760137 ~ 35777993 (+)
LOC110533750 LOC106584585 coding downstream 210795 35783955 ~ 35785664 (+)
LOC110488639 LOC106605005 coding downstream 212737 35785691 ~ 35788114 (+)
si:ch211-231m23.4 LOC106605003 coding downstream 215901 35789061 ~ 35791241 (+)
LOC118939544 LOC106605239 non-coding upstream 98837 35441730 ~ 35470406 (+)
LOC110488522 lsr non-coding upstream 161258 35396335 ~ 35405972 (+)
G136202 NA non-coding upstream 172019 35394744 ~ 35395183 (+)
G136201 LOC106584099 non-coding upstream 173414 35393308 ~ 35393788 (+)
G136554 NA non-coding downstream 964 35574124 ~ 35574329 (+)
G136561 NA non-coding downstream 4798 35577958 ~ 35578281 (+)
G136573 NA non-coding downstream 12869 35586029 ~ 35586280 (+)
G136583 NA non-coding downstream 21375 35594535 ~ 35594840 (+)
G136593 NA non-coding downstream 27603 35600763 ~ 35600962 (+)
LOC110488391 LOC106582385 other upstream 383206 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 413552 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 566647 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 594401 34972449 ~ 34972801 (+)
G135916 NA other upstream 595271 34971640 ~ 34971931 (+)
LOC100653444 LOC106584591 other downstream 281989 35855149 ~ 35865269 (+)
G136994 NA other downstream 409672 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 526451 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 808732 36354883 ~ 36405310 (+)

Expression


Co-expression Network