LOC110488613 (LOC106605164)


Basic Information

Item Value
gene id LOC110488613
gene name LOC106605164
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35702882 ~ 35726314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560895.2
TAAATATCAACCGGAAGTCACATCGGAGGTTATGAATTGAGAGGGATTTTGGTGTGAAATTCAGGGGGCACGTTTCGGCTGTTTTTGTCCGCCTTTACATTAGAATAAAATTCACAGGGAAGTCAAATACAATGCATGAAACACAGAAATGTCAGACAGGGTACTTCTATTGAGCATTTAGAGGCGTTTTGCTTTCTATAAACTAGCTATGAACGTGTTCCATTGTTTGCTACCCAggcaattgctaactagctagcaagcgtAGAGGTTTGGTTTTGATTAGCTGAAAAAAACACAAATAAAGCGGCACCACTTTTTTGATAAGTCAAGTGACTAGCGCAAAATGCCGGAGATAAAACTCAAGCATGTAGTGTCTTGCAGCACCGAAGACAATACTCACAAGGCTGACAACCTGCTGAGCTCAGACACATACAGAAAATGGAAAGCAGCAAGGCCAGGGGAGAAACAAACCTCAGTCATTATACAGTTTGAGAAAGAAGAGCAGGTGTACAGCATAGACATAGGAAATGAAGGGTCTGCTTTTATCGAGGTGCTGGTGGGACACTCAACCTCTGTCAAAGACCAGGACTATGAGGTTTTGCTGGTCACGTCCTCCTTCATGTCCCCCATGGAGAGCCGTAATGGCACCAACATCAACCGCGTGCGCTTCTTTGGCCCTAACCAGCTGGTGAAGGCTCACGCCCAGGAGAAATGGGACCGCGTGAAGATTGTGTGTAGCCAGCCGTACAACAAGAACATAGCATACGGAGTGGCCTTCGTGAAGTTCCATTCACCACCAGACAAAAGTGATCCACCAACCACAACAACACCGAAGTTGACCAAGCTGGGCCAGTTCCGGGTGAAGGATGAGTCCCCATCGGCTTGCCCCAGTCTACAGCCAGGCAGCCTCTTCTTCAACAGAGAGAGCACCTCCAAAGCCAGCCCAGCGCTCAAggTTTCGCCACAGACTGAGAAGCTCAGCTATGCAGCTGCCGCCCTGCAGTCTGGATCAGGGTCTGGCCACTCCTCAGCCCCACCGTCCTCCAACTCTCCCCCACCACAGGCAGCAGTGAAGAGGAAGTTTGAGTTCACTAAAGAGCGCCAGACTGCCCTCGCTCCGCCCCCCTCAAAGAAACCCAGCCCTATGGGCTCTCCTGAACGGGGCACTACCACCCCCAAACCCAAGGCCAAACCCAGCACAGCCAGTACTCCCAGCcccatcgctgccaaagTCTCCCCTGCCCAGAAAACCCCAGACACCAAGAAGAAGGAGAGCCTGTCCAAACCACAAGCCAAGCCCAGAGCCAAACCCTCCAAAGCCCAGTCCAGCTCCTCCGAGGCCACCATTCCCCTCAACAAGATCATGGAGGGTGTGGTGTTTGTGCTGAGTGGCTTCCAGAACCCCTTTCGGGGGGACCTGAGGGACAAGGCCCTGGCCATGGGGGCCAAGTACCGCTCTGACTGGACCCCTGACGCCACACACCTCATCTGTGCCTTCTCCAACACCCCCAAGTACAGCCAGGTGAAGTCAGCAGGGGGCGTCATCGTCCGGAAGGAGTGGGTGCTGGACTGTCACAAGAGGAAGCAGAAGATCTCCTTCAAACGGTACCTGATGCACGGAGCGGCGTCCAGCTCGGAGGGGAGCGAcgtagaggaggatgaagagagtgaggaggaaaaagagagaaggACTCCacaaaagaggagagaagaagaaaggcaACCCACTCCCAGAAAGACCCCCAtcaagaaagaggaggaagatctGTATGGTGGCTCCACAGACGCAGATGAACCAGAAGATGAGTCTGGCATGGACACGGAGGACGAGCTAAAGAGGGTGGAGAGCGCTAGTCggcagaaggaaggagagaaggagagaaaaggagtgaAGGAGGAGGACCCTTTTGGGGGGTCGACTGACGAGAACACTGACGCTGAGGCCGAGGAGGACAAGCCCATCCCTGAGTTaccagATTTCCTAACTGGAAAGCGATTCTTCCTCTATGGCAAGTTCCCCAACAATGACAGGCGCCTACTCCTGCGGTACATCATCGCCTTCAACGGGGAGGTGGAGGACTACATGAGTGAAAAGGTCCAGTTTGTCGTCACCGGCGAGGGATGGCACGACTCCTTTGAAGACGCACTGATGGAGAATGGTAATTTAAGCTTTGTCAAACCCACATGGATTTTTGCCATCAACGATCGACAGAAGATGCTGCCATATCAGCCCTACACTGTTGTCCCTTGAGACTTGCATTTGCTAacgtgctcacacacacaaacacacacacaacagtattGTACCTGTCCAAAGGGTAGGAGAGGTTTACATTGAAGCCATAGACACTAGCTCTTCTCAGATCCTCAGGTAAATGAAACCAAGCCTGTGCCATTTTGGTACAAATGCCTTAACTTTACCTGAGGCCATCCAGAGAGCTGGATGAAATGGTTTCCTTACCAGAGATGGCATATCTTCGTAGACTTATCATTACCGGTGCACAAAAATAACTCCCCCATCTGCCTCTCTTTCAGGGCTTTTAAAACTATATTTCTCTGCTTCACCTCCACTACCTCAGGGTCTATGTGGAAACTTCAGTTACCACTCATGTCCTGAAAGGCCACTGGCTTTGATAGTGGAGGGTGTATTAGTGTTAGGAGCAACATAGAGGGTCCTAGGTGTAGccggaatggcaccctattctcttaaagagccctatgtgccctggtcaatagtagtgtactacgtagggaatagggtgccgtttacTGACGTAAAGGTGTTTGTTCGTTTTTTAAGGTCACTGACACTCGATGCCAACGACCACGAAATATGAATAGAAAATAAGGCCTTTGTCCTTGTTGCTCGGTAGGAATAGGAAATGGACTTCATGGATTGGTTGGTATTCCTCATCTTATTATTTATTAAGTCCACTTTGGCATAATACATGGGATTGTAGTGTAATTTGTAGCATGTAGTGCTGTACAATGACATGTACTTTTGTTTTATTCATGTTGTATGCTGTTTGAACTGTACACAGAGACTATTGTGTGCAAAAGTGTGAGGATCCAATAAGTCCTGTTTTTGCTTGGTTATTTCTGGAAGTATATGATGTGTGTTCATTATCCTTGTTTTTCCCGTCTAGATTCGACTTGTTTGTTACAGTATCTTAGCTTTGCTTTCagatttaccccccc

Function

NR:

description
DNA repair protein XRCC1-like

GO:

id name namespace
GO:0000012 single strand break repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K10803 XRCC1; DNA-repair protein XRCC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560895.2 True 3198 mRNA 0.49 17 35702882 35726314

Neighbor

gene id symbol gene type direction distance location
drd2l LOC106582624 coding downstream 2036 35674291 ~ 35700846 (-)
LOC110488606 LOC106605166 coding downstream 34471 35664248 ~ 35668411 (-)
LOC110488593 LOC106605167 coding downstream 39220 35629549 ~ 35663662 (-)
LOC110534863 LOC106605168 coding downstream 92085 35609629 ~ 35610797 (-)
LOC118939553 LOC106582593 coding downstream 93453 35607541 ~ 35609429 (-)
LOC118936742 LOC106605187 coding upstream 10017 35736331 ~ 35738872 (-)
LOC110488647 LOC106605161 coding upstream 64948 35791262 ~ 35799534 (-)
vsig10l vsig10l coding upstream 85434 35811748 ~ 35817949 (-)
etfb LOC106582677 coding upstream 92762 35819076 ~ 35823166 (-)
LOC110488718 LOC106605186 coding upstream 347825 36074139 ~ 36080882 (-)
G136680 NA non-coding downstream 85385 35617243 ~ 35617497 (-)
G136676 NA non-coding downstream 95397 35606590 ~ 35607485 (-)
G136675 NA non-coding downstream 96322 35605701 ~ 35606560 (-)
G136671 NA non-coding downstream 103854 35598666 ~ 35599028 (-)
G136743 NA non-coding upstream 25047 35751361 ~ 35751639 (-)
G136744 NA non-coding upstream 25446 35751760 ~ 35752076 (-)
G136749 NA non-coding upstream 27960 35754274 ~ 35754488 (-)
G136751 NA non-coding upstream 29497 35755811 ~ 35756183 (-)
G136850 LOC106605162 non-coding upstream 44941 35771255 ~ 35774333 (-)
G136399 psmc4 other downstream 395153 35306367 ~ 35307729 (-)
G135575 NA other downstream 1098404 34604215 ~ 34604478 (-)
G134668 NA other downstream 1836945 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 2477780 33208500 ~ 33225125 (-)
G137479 NA other upstream 643690 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 907879 36634193 ~ 36639005 (-)
G138080 NA other upstream 1099552 36825792 ~ 36828397 (-)
pnrc2 LOC106605140 other upstream 1118619 36844929 ~ 36849373 (-)
LOC110501508 LOC106605132 other upstream 1734560 37442359 ~ 37463839 (-)

Expression


Co-expression Network