LOC118936742 (LOC106605187)


Basic Information

Item Value
gene id LOC118936742
gene name LOC106605187
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35736331 ~ 35738872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933832.1
tccCTCTGTTGTGTCTGTTGAGCATGCTTCTAGTCATGTGTCTGGACAGAATgctcctgctgtgtactgtgatcTTTGGCTTCTGGAAGGACACCTATGCTGTGTCCCCAGTGCCCTCTGTCCCAAACTATGTCCCTGCCTTGGCAGGCTCCTGCGTGGTCATCCCCTGCTCCTTCACTCCTCCAGCCTCTCACTCCATGGGGAAGGTGGTGGGCGTGAGGCTGCGCTACAGGACTGGTCACATCTTCCTCCTGCGGAGTACAGCTTTCAGTTCGGATGACAAATCCACGGTCAGCAAGGAGTTCCAGGGCCGGACATCCCTCCAGGGAAACACGGACGATGGAGACTGCTCTGTAATGATTGACAAGGTCCACCTGGCTGACTCCAATGTCTATCAGCTGGCGCTGAAGGGCCATGGACAGAAagactgggggaaggagaggagtgtCAACATCATTGTGTCAGAGTCCCCAGAGCTCCCAGTGATCAGCGGTGTGAGGGCAGCTACAGAAGGACAGATGGTGTCACTAAACTGCAGCATCAGTTACTCCTGTCCCTCCCAGGCCCCCACCCTCCAGTGGCGGTGGGAGAGAGGAGCTCAGGAGAACAGCAGCGAGTACGGGGAGCCGCATGTACTCCAGACCCAGGGTCAGGGGCCTACACTACGGACCTCTCTCACCTTTATCACATCGTATCGCATCAAACCCAGAATGAGGTGTGAGGCAGTATATCCAGGAGGAAGAAGAGTATACACCGTAAAGGAGCTCCATGTGACATGTAAGTACTTTCTATATAAATGTATGATTGTTTGCAATGCTAAGCTAGGGCCCATATTCATAGTGTTTCagactgctgatctaggatcagattttaCTTAA

Function

NR:

description
sialic acid-binding Ig-like lectin 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933832.1 True 878 mRNA 0.53 3 35736331 35738872

Neighbor

gene id symbol gene type direction distance location
LOC110488613 LOC106605164 coding downstream 10017 35702882 ~ 35726314 (-)
drd2l LOC106582624 coding downstream 35485 35674291 ~ 35700846 (-)
LOC110488606 LOC106605166 coding downstream 67920 35664248 ~ 35668411 (-)
LOC110488593 LOC106605167 coding downstream 72669 35629549 ~ 35663662 (-)
LOC110534863 LOC106605168 coding downstream 125534 35609629 ~ 35610797 (-)
LOC110488647 LOC106605161 coding upstream 52390 35791262 ~ 35799534 (-)
vsig10l vsig10l coding upstream 72876 35811748 ~ 35817949 (-)
etfb LOC106582677 coding upstream 80204 35819076 ~ 35823166 (-)
LOC110488718 LOC106605186 coding upstream 335267 36074139 ~ 36080882 (-)
LOC110488725 LOC106605185 coding upstream 342847 36081719 ~ 36088254 (-)
G136680 NA non-coding downstream 118834 35617243 ~ 35617497 (-)
G136676 NA non-coding downstream 128846 35606590 ~ 35607485 (-)
G136675 NA non-coding downstream 129771 35605701 ~ 35606560 (-)
G136671 NA non-coding downstream 137303 35598666 ~ 35599028 (-)
G136743 NA non-coding upstream 12489 35751361 ~ 35751639 (-)
G136744 NA non-coding upstream 12888 35751760 ~ 35752076 (-)
G136749 NA non-coding upstream 15402 35754274 ~ 35754488 (-)
G136751 NA non-coding upstream 16939 35755811 ~ 35756183 (-)
G136850 LOC106605162 non-coding upstream 32383 35771255 ~ 35774333 (-)
G136399 psmc4 other downstream 428602 35306367 ~ 35307729 (-)
G135575 NA other downstream 1131853 34604215 ~ 34604478 (-)
G134668 NA other downstream 1870394 33865488 ~ 33865937 (-)
LOC110487618 LOC100380645 other downstream 2511229 33208500 ~ 33225125 (-)
G137479 NA other upstream 631132 36370004 ~ 36370328 (-)
G137839 LOC106605146 other upstream 895321 36634193 ~ 36639005 (-)
G138080 NA other upstream 1086994 36825792 ~ 36828397 (-)
pnrc2 LOC106605140 other upstream 1106061 36844929 ~ 36849373 (-)
LOC110501508 LOC106605132 other upstream 1722002 37442359 ~ 37463839 (-)

Expression


Co-expression Network