LOC110488622 (LOC106605163)



Basic Information


Item Value
gene id LOC110488622
gene name LOC106605163
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35744227 ~ 35751886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036947175.1
TACAGTCAACAGTATTTGGTCTAAAGAGTGCAGGGTGCAGTAGTGAATGTAGGCATATCTTCTGTTCAGcaccagcagcaccacaCCTCCATTGGATAATGACCTCTACAGCCCAGCAGCTGCTGCACTCCCAGCGGGATGTGCTCCTGGAGTGGACACGTGTCCACCCTGCCCCCCTACTACGCTGGCTATGTGACGCCAGGGTACTTTCTCACGCCCACTACTTGTCCCTGCTGGAGCGTTCACCCTCCAATGCCGTTGCGCAGGCCCTGGAGACGGTGTGCGCAAGTGAGGAGAGCAGCCGCGGCTTCCTGCAGGTCCTGAGGGAGgtgcaGGACTACTACTGTGAGGAGCTGCAGGTCTGGGTGGAGAGACACTgcagggagaggacagaagagatgAAGGAGGCCAAACCGGTTAGAGTGGAGGAGAAGAAAAAGCCAAAAAGCCCCATTTCAAAACTGTTCAAAGGCAAGAGTAAATTCACTGTGACCCCTGAGGTCAAAgTTGAGGAAGGGTTGAAACCTCGGCGGAGTGTAAAATCTTCTCATCTCAGAGTTCCCCTTTCAGCTCACAGAAATACCCTTCTGGAACGTACAGAACGACTTACATCTTACGCAGAAGGGGGAAGACAGGCCGCCAACTCTGCTTCTCACATTGAGATCCGATACACTGATCTCTTTGTGACTGAGGACAACGAGTCATTTGACAGCAGCCAGCATGAGTACTTCACCCTGGCCAGTCGACGGGCACGCATCTACGCCCACCAGGCCTGCCAACGCATCTGCCCTCGCCACCTCCTGAGCCCCCAAGGCACCACAGGGCGCCCACCTAAGCGGGTAAAGGTGAAGGGCATCGCTGGCATCGGCAAGAGCGTGGCAGTGCAGAGGCTGGTCTATGAGTGGGCGCTGGGGAAGCACATGCGTGAGTTCACCTGTGTGTTTGACCTCCGCTTCCGCGAGCTGAACCTGATCAAAGCCCCGCTGAGCTTACTGGACCTGCTCGAAGACCGATTCCGCTACTTCAAGACTGTCCTGCCAGACCTTCTGGCCTCGCCAGGTCCCTTGCTCTTCATTCTGGATGGGCTGGACGAGTTTCAATACCAACTGGACTGGAATGCTCCTGACAGGGACATCGGCGTGGACTCCAAGGTGCCTGTATCAGAGCTGATGATGGCGTTGATCAAGGGGAGTCTACTCCCAGAATCCTCGGTCATCCTGACATCCAGGCCTTCCACGGATGCTCCTAAGCGGTTCTTCCAGCGTTGCTGCGTGGTCCTGGGATTCGAGCAGGAGCAGGTGAAGGAGTACACCTCCAAGTTCTACAAGGACCCCGAGGTGTCTGAGAAGGTGTACAACTACATCGTGGACAATGACAACCTCTTTGTGctctccttcatccctctctattGCTATATCATCTGCACCGCCTTGGCTGAGTTTTTCTCCTGTCAGGAAGATAGTGACTCACGGTCTCTAGAGTTAAACCCACCTAGGACAGTCAGCGAGGTTTACTACTGCTACCTGTTTACAGCCATCAAGCACCATGCGCTGAAAGGTAAGGCGAAGAGGAACACCCTCAGATCGGAGGTACTTTCTCTAGTTAGGCAACAGCTGACGAACCTGGGGAGATTAGCTTACGAAAACCTTCTAAAGAGTAAGATCATGTTCGACATACAGGACCTGGAACGTTATGGTCTCACGCCAGTAGATATACAGAGCACCTTCCTCAGTCAGATCCTGGTGCCTCtgaaagaggagagggtggagatgtTTTCCTTCTTCCACTTGACCGTCCAGGAGCATCTGGCCGCCCTGTACTGTGCGATCAACCTCTCAAAGCAGGGTCACATAATCCAGGCTCTGGACTTCTGGTGCTTTGGTGAGATCCCCCCACCTTCCACCTCCCCAACTCCCCTACTGAGCCAAGACCTCCACCTGGACCAGACTAGGGTGGAGAACCTGCAGATGTTGACTCGCTTCTTCATGGGGCTTCTCCGGGCCAGGCTGGGGGGGCAGTTGGATGGGCTGGTGCTGGCCCCTCTGGAGGTGGGCTTGGAGGGGGTGGATATCCCCACCAGGCTGGGTATCTGGTTCCAGAACCAGTTTAAGGGTAGGCAGCTAGCCAACCAGACGGCGCTGAATCTGCTCCACTGTTTGATGGAGCTGCACATGAAGGAAGTCACCAGCAGGGCGTCACCAGAGATCCGGAGTCTGAACCTGTTCAAGATTAAGATGAGCGTGGTGGACTGTGCAGCATTACACTATGTGTTGCAGTTCTCCCCACATAGGCTCGAGGAGCTCAACCTGGGATACTCCAACATCGGAAACAGAGGTCTTAGCAGGCTAGCTCCGATATTGCACCGCTGTGAATCTCTTTATCTGCGATATAACTGTCTGGAAAGGGAGGCAGCAATCCTGGAATCTGCAGTGTTGAAATCAAACGAGTGTCAGtatgtgtggtaaCAACTTGGGTCCAGAAGGGGTTCTGGAGCTGTGGAAGGCCCTGGAGCAGAACATTACACTGGAGGAACTCTACTTGGACATCACTGGCatcacagagagaggaacagagaacatTGTCAATTGCCTCAGCAAGAACACCTC
>XM_021560908.2
TACAGTCAACAGTATTTGGTCTAAAGAGTGCAGGGTGCAGTAGTGAATGTAGGCATATCTTCTGTTCAGcaccagcagcaccacaCCTCCATTGGATAATGACCTCTACAGCCCAGCAGCTGCTGCACTCCCAGCGGGATGTGCTCCTGGAGTGGACACGTGTCCACCCTGCCCCCCTACTACGCTGGCTATGTGACGCCAGGGTACTTTCTCACGCCCACTACTTGTCCCTGCTGGAGCGTTCACCCTCCAATGCCGTTGCGCAGGCCCTGGAGACGGTGTGCGCAAGTGAGGAGAGCAGCCGCGGCTTCCTGCAGGTCCTGAGGGAGgtgcaGGACTACTACTGTGAGGAGCTGCAGGTCTGGGTGGAGAGACACTgcagggagaggacagaagagatgAAGGAGGCCAAACCGGTTAGAGTGGAGGAGAAGAAAAAGCCAAAAAGCCCCATTTCAAAACTGTTCAAAGGCAAGAGTAAATTCACTGTGACCCCTGAGGTCAAAgTTGAGGAAGGGTTGAAACCTCGGCGGAGTGTAAAATCTTCTCATCTCAGAGTTCCCCTTTCAGCTCACAGAAATACCCTTCTGGAACGTACAGAACGACTTACATCTTACGCAGAAGGGGGAAGACAGGCCGCCAACTCTGCTTCTCACATTGAGATCCGATACACTGATCTCTTTGTGACTGAGGACAACGAGTCATTTGACAGCAGCCAGCATGAGTACTTCACCCTGGCCAGTCGACGGGCACGCATCTACGCCCACCAGGCCTGCCAACGCATCTGCCCTCGCCACCTCCTGAGCCCCCAAGGCACCACAGGGCGCCCACCTAAGCGGGTAAAGGTGAAGGGCATCGCTGGCATCGGCAAGAGCGTGGCAGTGCAGAGGCTGGTCTATGAGTGGGCGCTGGGGAAGCACATGCGTGAGTTCACCTGTGTGTTTGACCTCCGCTTCCGCGAGCTGAACCTGATCAAAGCCCCGCTGAGCTTACTGGACCTGCTCGAAGACCGATTCCGCTACTTCAAGACTGTCCTGCCAGACCTTCTGGCCTCGCCAGGTCCCTTGCTCTTCATTCTGGATGGGCTGGACGAGTTTCAATACCAACTGGACTGGAATGCTCCTGACAGGGACATCGGCGTGGACTCCAAGGTGCCTGTATCAGAGCTGATGATGGCGTTGATCAAGGGGAGTCTACTCCCAGAATCCTCGGTCATCCTGACATCCAGGCCTTCCACGGATGCTCCTAAGCGGTTCTTCCAGCGTTGCTGCGTGGTCCTGGGATTCGAGCAGGAGCAGGTGAAGGAGTACACCTCCAAGTTCTACAAGGACCCCGAGGTGTCTGAGAAGGTGTACAACTACATCGTGGACAATGACAACCTCTTTGTGctctccttcatccctctctattGCTATATCATCTGCACCGCCTTGGCTGAGTTTTTCTCCTGTCAGGAAGATAGTGACTCACGGTCTCTAGAGTTAAACCCACCTAGGACAGTCAGCGAGGTTTACTACTGCTACCTGTTTACAGCCATCAAGCACCATGCGCTGAAAGGTAAGGCGAAGAGGAACACCCTCAGATCGGAGGTACTTTCTCTAGTTAGGCAACAGCTGACGAACCTGGGGAGATTAGCTTACGAAAACCTTCTAAAGAGTAAGATCATGTTCGACATACAGGACCTGGAACGTTATGGTCTCACGCCAGTAGATATACAGAGCACCTTCCTCAGTCAGATCCTGGTGCCTCtgaaagaggagagggtggagatgtTTTCCTTCTTCCACTTGACCGTCCAGGAGCATCTGGCCGCCCTGTACTGTGCGATCAACCTCTCAAAGCAGGGTCACATAATCCAGGCTCTGGACTTCTGGTGCTTTGGTGAGATCCCCCCACCTTCCACCTCCCCAACTCCCCTACTGAGCCAAGACCTCCACCTGGACCAGACTAGGGTGGAGAACCTGCAGATGTTGACTCGCTTCTTCATGGGGCTTCTCCGGGCCAGGCTGGGGGGGCAGTTGGATGGGCTGGTGCTGGCCCCTCTGGAGGTGGGCTTGGAGGGGGTGGATATCCCCACCAGGCTGGGTATCTGGTTCCAGAACCAGTTTAAGGGTAGGCAGCTAGCCAACCAGACGGCGCTGAATCTGCTCCACTGTTTGATGGAGCTGCACATGAAGGAAGTCACCAGCAGGGCGTCACCAGAGATCCGGAGTCTGAACCTGTTCAAGATTAAGATGAGCGTGGTGGACTGTGCAGCATTACACTATGTGTTGCAGTTCTCCCCACATAGGCTCGAGGAGCTCAACCTGGGATACTCCAACATCGGAAACAGAGGTCTTAGCAGGCTAGCTCCGATATTGCACCGCTGTGAATCTCTTTATCTGCGATATAACTGTCTGGAAAGGGAGGCAGCAATCCTGGAATCTGCAGTGTTGAAATCAAACGAGTGTCAGGTGAAGAAGCTTTTtatgtgtggtaaCAACTTGGGTCCAGAAGGGGTTCTGGAGCTGTGGAAGGCCCTGGAGCAGAACATTACACTGGAGGAACTCTACTTGGACATCACTGGCatcacagagagaggaacagagaacatTGTCAATTGCCTCAGCAAGAACACCTCTCTGAAAACGCTGACCATCGTGGGGAATGACATTGGGGAGGTAGGGAAGAGGAGGCTGAGGGAGCTAGGGCATCGACGGCCGGAGCTCCAGATCATTGGGAACTTTGTGGACGACCTAGGACTGCTAAACGCCTACCTGGACTGGGTAGAGGAGATACGGGATGACCGGGACCAGATGGACTCAGTGAAGAACGCAGATGCCCTACAGTCCATCTTGAAGGGGCTGAGGGTGGGAGCAGGTGGGGAaaatggggagggaggggaaggagagaacaCAGCCAAAGCCCTGGAGCTGGAGACCAAGATCTTGGAGCTTTTGAACGCTCCCGCTCACCTGGCTGGAGTGAGATGACTTCACTTAACCTTTTGCTCTGTGAGGAGCACAGGTTATCCACAAAATGAGATGACTGATCAAGTCTAAATGGGCAAAATAAAATGCAGCCACACCTTTGCATCGTCACAAAACCAGAGAACAACCTCTGTCCAGTGAATTCCACAAAgcaagcatattgcatgtaacaaactgtgacatgacctacagcatggtcaagcaagtgaATGTTTCCAAAATGTTctgaccactaaacaactattgattcagaaccacggagagttaccacgagtctcaaagaaaacaggacctgcctccactattccagcaccatttcaacttcaacactTCAACCACATCAAATCACATGTTCTTAGTTTAACACAGTGACAattaaaagataccaaaaactatttagtccatTGAGcaaaatatgatgtggctgtccatggttctaatttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctattgcATGTAATTAAatatgttgactcaccctacttgttgATGAAACGGTCAACCACTCTGTCATAAAGTACACGCTTTTATtctttgttgtcctaggctacatTTCTGTGAATGACGTATGCTCTCAATTcgatttgataggagtgacacCAAATTTCAAGCTGGCTTCCCTACACACTTTTTTTgatgcgccaggaccattcacaatTGCGCTCGCTCAGTTTAGTTCAATGCAGATTGGCACATttctgaatactttttttttatcaagggaggccaaattcttgctggcttcccttgcattctaTTCAATGCAATTGGCGGCAGCAATAGatggacagagatggacagacagaggggcgctgttttgctCGCTTGGATACTTTGTCCgatgagatacattcagcctcttgtcgaattgaaggaaaatgatAAAACTCAGAGAGATGAAAGatacatttaactaggcaagtcagttaagaacaaattcttattttcaatgacgaactagcaacagtgggttaactgcctgttcaggggcagaacgacagaccttgtctgcaaccttttggttactagtccaacgctctaaccactaggctaccctgacgcccCACATTTTTAATGGTAAAACATTtttgggaagcctggcttcccttggcacccatgaatacacgccactgccTATATGTCACACGGGACTGGGTGGGTGAGgaaggaatcaggcgcagagagttcCACTGGGAAAAAGTACTCTTTAATAAGGCACAAAAATAGACAAGCCCAACAACACAGGGCCCGGACAGTAAATGAGactacacaaaacacagggtGCCAAGTCCAGAAAATTACACATCTCTGCCTAAACGCACACGCGTAACACaaagacaatcccgcacaaaacaagcgCGGGTACACGTACTTTAAATTAGGAAGCTCATTAAGCACATACAACaggacacaggtgaaactaataagacaaaacaaacagacaaacgaaaaagggatcggtggcggctagtaggccggtgggagccaacttcggtggaagtcgtgacactgtaGCCCTAAATCCTAGCCCTTTTATACTTTTCTAATTGGGCCGTAGTGA

Function


NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036947175.1 False 2606 mRNA 0.54 8 35744227 35749607
XM_021560908.2 True 4625 mRNA 0.50 9 35744227 35751886

Neighbor


gene id symbol gene type direction distance location
LOC110488583 LOC106582465 coding upstream 171067 35567202 ~ 35573160 (+)
LOC110488573 LOC106605190 coding upstream 189988 35548120 ~ 35554239 (+)
LOC110534853 NA coding upstream 203779 35526086 ~ 35540448 (+)
LOC110488566 LOC106605239 coding upstream 232037 35506657 ~ 35512190 (+)
LOC118939546 LOC106582469 coding upstream 246144 35492817 ~ 35498083 (+)
LOC110488629 LOC106605006 coding downstream 8251 35760137 ~ 35777993 (+)
LOC110533750 LOC106584585 coding downstream 32069 35783955 ~ 35785664 (+)
LOC110488639 LOC106605005 coding downstream 34011 35785691 ~ 35788114 (+)
si:ch211-231m23.4 LOC106605003 coding downstream 37175 35789061 ~ 35791241 (+)
LOC110488684 LOC106605158 coding downstream 77091 35828977 ~ 35845886 (+)
G136658 NA non-coding upstream 14706 35729233 ~ 35729521 (+)
G136657 NA non-coding upstream 15915 35727239 ~ 35728312 (+)
G136584 NA non-coding upstream 40299 35638113 ~ 35703928 (+)
G136589 LOC106582601 non-coding upstream 107728 35635157 ~ 35636499 (+)
G136610 NA non-coding upstream 111819 35631404 ~ 35632408 (+)
G136789 NA non-coding downstream 59848 35811734 ~ 35813460 (+)
LOC100653444 LOC106584591 non-coding downstream 103342 35855149 ~ 35865269 (+)
G136805 NA non-coding downstream 128463 35880349 ~ 35887245 (+)
G136842 NA non-coding downstream 172869 35924755 ~ 35924957 (+)
G137053 NA non-coding downstream 338170 36090056 ~ 36090288 (+)
LOC110488391 LOC106582385 other upstream 560231 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 590577 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 743672 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 771426 34972449 ~ 34972801 (+)
G135916 NA other upstream 772296 34971640 ~ 34971931 (+)
G136994 NA other downstream 230946 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 347725 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 630006 36354883 ~ 36405310 (+)

Expression



Co-expression Network