LOC110488629 (LOC106605006)


Basic Information

Item Value
gene id LOC110488629
gene name LOC106605006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35760137 ~ 35777993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560918.2
ATGCTTGGGTCTCGCAGGGTTAAAGATTTATAATACATACAGCTTTGAAAGTTCCTCATTTTCCAaagacacagtcagtcagtcaatcagtcagacaCAGTTGCAGTTGAATAGGACATAGAAACACAACATACTTCTTATTTGATCCTCCCTACTATTCTATCTGTTGGCAAAAAAAAGAGACATGGCTGGCGCTTTAAGATTCCTCCTCAGTGGCTGTCTGCTGCAAGgtgtTCTCTGTGAAGATTGGACAGCCTTGATGCCTCAGAGTATAGAGGCTCTGAAGGGATCATGTGTGCGCATTCCCTGCTCATTTACACTTGGTTCCATAAAGGCAGTGGACTATGATCCCTGCCTAAAAACTCACTCATGTAATGCCATTTGGATGAGAGGGGGAACAGATAAGACAAACACAGTAGGCTCCAGTCCATCTGGGAACTTGAACCAGAAAGACTGTACTACAATCCTGGACAACATGCCTACTGGTGACAAGCTTTACTTCAGACTAGAATGTGGCAACTGTGTCAAGTTTAATTTTGGCACACCTGTTCAAATCAATATCGCAGACACTCCCCCCACACCCACTCTAACCCCAGCTACAGTGGAAGTGAGGGAGGGGACCTCAGTGAGTTTGATTTGCTCTGCTGCAGCCCcatgtccctctctccacccaaCTCTGACATGGACCCCCAGTCTGGGTCAAAGTGAGGAGGGACTACAGGAGAATCAGGATAAAACTCAAGTTAAGACCTCTTCTCTGACCTTCACTGCTTCATACCTCCATCATGAACAGAATATCTCCTGCACTGCTCTCTACAAACAACAAGATGGCAAGAATGTCAAATCACCTGAAACTAGTCTGACCGTCACGGTTCTATTTTCTCCCAAGAAcacctcagtgtcagtcagtccctctggttCAGTGTTAGAGGGCAGCTCCATGACTCTGACCTGCAGCGGCAATGCCAACCCAGCAGTGAGCTAcacctggtacagagtcaatggagTTCAGGTGACAACAGTGGGGTCTAGCAGAATGCTAACTATCCAGGTGTCTGCAAACAACAGTCAGTTCTACTGTGAAGCCAGAAATGACCATGGAACTGAGAACTCCTCTGTCATTCAACTAGATTTGCCATATCCTCCCATGTATACCTCAGTGTTAGTCAGTCCCTCTGGTCCAGTGGTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAGACCTAcacctggtacagagtcaatggagTTCAGGTGACATCAATAGGACATGGAGAGAAACATCAGACCCAGGTGTACACAGATCAAAGAAAGTTCTACTGTGAGGCTAAAAATGTCCATGGAACACAGAACTCATCAGTCTTTGAACTGGATGTTATGTACTCCCCAAAGAAcacctcagtgtcagtcagtccctctggttCAATGATAGAGGGCAGCTCTGTGACTCTGACCTGCAACAGCAATGCCAACCCAGCAGTGAAGACCTACACCTGGTACACAATCAGGGGAGGTCGGGGGACACCAGTGAAGAATATGCCAGAGCTAACTGTCCAGGTGTTGACAGATAACAGCATGTTCTACTGTGAGGCCAAAAATGACCATGGAATCCAGAAATCATCTGCCTTTCAACTAGATATGATGTACCCTCCCAAGAAcacctcagtgtcagtcagtccctctgattCAGTGTTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGTGGGGACCTACGCCTGGTACAGAGTCATTGGAGATCAGGTGACATCAATAGGACATGGAAACAAACATCAGACCCAGGTGTACACAGATCACAGACAGTTTTACTGTGGTGCCACAAATGACCATGGCACTAAGAACTCATCAGTCATTGAACTGGATGTATTGTATCCTCCCAAGAAcacctcagtgtcagtcagtccctctggttCAGTGTTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAAAACTAcacctggtacagagtcaatggagACCATGTGACACAAATTGCTAATGAAAGAGAGTTAAAAACGGAAGCATCTATAGACAACCACCAGTTCTACTGTGAGGCCAGAAATGACCATGGTACAAAGAACTCATCAATCATTCTACTGAATGTGCTATaCCCACCAAAAAACAGctcagtgtcagtcagtccctctagTTCAGCAATAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCACCAGTGGGGAGCTAcacctggtacagagtcaatcaaGAACAGGTCACAGAAGTGGGATCTAGCAGAATGCTAACTATCAAGGTACCCGCAGACAACAGCCAGTTTTATTGTGAGACCAGAAATCGTCTTGGATCCCAGAACTCATCTGTCACTCAACTAGATGGGATGTATCCTGCCAAGAACACCTCATTGTCGGTCAGTCCCTCTGGTCCAGTGGTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAGACCTAcacctggtacagagtcaatgggagggagggagtcattGTAGGATCTGGACAGAGCTTCACCTTCAATAAGATTGCTATCAATGATGGTGGGCGGTACTATTGCGAAGCAGAGAACAAGCATGGGGTGGACAACTCAACAACTACTTACATAGATGTGACATACCCACCAAAGAACACCTCAGTATCGGTCAGTCCCTCTAGTTCAGCAATAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCACCAGTGGGGAGCTACACCTGGCACAGAGTCAATCAAGAACAGGTCACAGAAGTGGGATCTAGCAGAATGCTAACTATCAAGGTACCCGCAGACAACAGCCAGTTCTATTGTGAGACCAGAAATCGTCTTGGATCCCAGAACTCATCTGTCACTCAACTAGATGGGATGTATCCTGCCAAGAACACCTCATTGTCGGTCAGTCCCTCTGGTTCAGTGGTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAGACCTAcacctggtacagagtcaatgggagggagggagtcattGTAGGATCTGGACAGAGCTTCACCTTCAATAAGATTGCTATCAATGATGGTGGGCGGTACTATTGCGAAGCAGAGAACAAGCATGGGGTGGACAACTCAACAACTACTTACATAGATGTGACATTTTCTCCAAAGATTCTGCCCTCCTCTCGCTGCATCAGAACTGCTGATCAGATCAACTGTACCTGTGAGAGTCATGGGAACCCCTCTCCCAAAGTGGAGTGGCGATTGGCTGGACAGCCTGTCAATCACTTTACTAACACTGTCGTCAGAGAGCGAATGGGCAGCACAGGCCTGAGAAGCTCCCTCACCACCCACCAATCACAGGAGGAGGACACGCCCCCTCTGGTCTGCCTCAGCACCAACTCTGTAGGATCTTCCAGCCTCCAGTTCTGTATTCAATGCCTGGGGAGTCACCAGGGGCTGGGCAAAAGCGTTGAAGTTCTTGAGGGTCAAGTTTCCTTGCCAATCTTCATCACTGCAATATTTGTTTCGGCATTAATGACAGCACTGATATGTGCTTTACTGTATCTACGAAAGGTTTGGTATCCTTGTTTTACGGTACTCAGAGGTCATTACAAATATTACGACAGTGATGTGGGGATGAACCTAGTTCCGACCAGTGGTGAGAGGACACAGGATCATCCTGCGCCAGAAGAAGACATATACGCCAACAGCAATGTACCGAGTCAGGCCAGGAGACAGGGACGCAAACAAGACCTAGAGGCCCCGAATCCGGGTCCCAAACCCCTGCCTTCCTCCAAAGCCATCTCTGAGACCGACCGAACCAGCCTGCCCAATCTAATCTCTGACACTGCTACAAATCCAGGAGAAGGCACTGCaaagaaggagggggaggatgtGTTTTATTCCAGTGTGAtttggaagaagaagaagtggatgaagaagaagaatgagggGTCCGTGGATGGGGGAAGGGAGGCATCTAGCGGTTCCTATCTGGAGGAGGAAAGGTGTGTGCTGGGAAATGTAGGCAGACACAGAATAAGTAAGTTACTGGAGATGGATCACCTGCAGTTTCTCTAGTTTTTCATGAATATAATGTAGGTCTATTGTACTTTCACAGAGATATATTGCTCTTAATGAAAGTATAACGCTGTCTTTTTCAccacaaaacaaataaaaacatgaaaTGTCCA
>XM_021560927.2
ATGCTTGGGTCTCGCAGGGTTAAAGATTTATAATACATACAGCTTTGAAAGTTCCTCATTTTCCAaagacacagtcagtcagtcaatcagtcagacaCAGTTGCAGTTGAATAGGACATAGAAACACAACATACTTCTTATTTGATCCTCCCTACTATTCTATCTGTTGGCAAAAAAAAGAGACATGGCTGGCGCTTTAAGATTCCTCCTCAGTGGCTGTCTGCTGCAAGgtgtTCTCTGTGAAGATTGGACAGCCTTGATGCCTCAGAGTATAGAGGCTCTGAAGGGATCATGTGTGCGCATTCCCTGCTCATTTACACTTGGTTCCATAAAGGCAGTGGACTATGATCCCTGCCTAAAAACTCACTCATGTAATGCCATTTGGATGAGAGGGGGAACAGATAAGACAAACACAGTAGGCTCCAGTCCATCTGGGAACTTGAACCAGAAAGACTGTACTACAATCCTGGACAACATGCCTACTGGTGACAAGCTTTACTTCAGACTAGAATGTGGCAACTGTGTCAAGTTTAATTTTGGCACACCTGTTCAAATCAATATCGCAGACACTCCCCCCACACCCACTCTAACCCCAGCTACAGTGGAAGTGAGGGAGGGGACCTCAGTGAGTTTGATTTGCTCTGCTGCAGCCCcatgtccctctctccacccaaCTCTGACATGGACCCCCAGTCTGGGTCAAAGTGAGGAGGGACTACAGGAGAATCAGGATAAAACTCAAGTTAAGACCTCTTCTCTGACCTTCACTGCTTCATACCTCCATCATGAACAGAATATCTCCTGCACTGCTCTCTACAAACAACAAGATGGCAAGAATGTCAAATCACCTGAAACTAGTCTGACCGTCACGGTTCTATTTTCTCCCAAGAAcacctcagtgtcagtcagtccctctggttCAGTGTTAGAGGGCAGCTCCATGACTCTGACCTGCAGCGGCAATGCCAACCCAGCAGTGAGCTAcacctggtacagagtcaatggagTTCAGGTGACAACAGTGGGGTCTAGCAGAATGCTAACTATCCAGGTGTCTGCAAACAACAGTCAGTTCTACTGTGAAGCCAGAAATGACCATGGAACTGAGAACTCCTCTGTCATTCAACTAGATTTGCCATATCCTCCCATGTATACCTCAGTGTTAGTCAGTCCCTCTGGTCCAGTGGTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAGACCTAcacctggtacagagtcaatggagTTCAGGTGACATCAATAGGACATGGAGAGAAACATCAGACCCAGGTGTACACAGATCAAAGAAAGTTCTACTGTGAGGCTAAAAATGTCCATGGAACACAGAACTCATCAGTCTTTGAACTGGATGTTATGTACTCCCCAAAGAAcacctcagtgtcagtcagtccctctggttCAATGATAGAGGGCAGCTCTGTGACTCTGACCTGCAACAGCAATGCCAACCCAGCAGTGAAGACCTACACCTGGTACACAATCAGGGGAGGTCGGGGGACACCAGTGAAGAATATGCCAGAGCTAACTGTCCAGGTGTTGACAGATAACAGCATGTTCTACTGTGAGGCCAAAAATGACCATGGAATCCAGAAATCATCTGCCTTTCAACTAGATATGATGTACCCTCCCAAGAAcacctcagtgtcagtcagtccctctgattCAGTGTTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGTGGGGACCTACGCCTGGTACAGAGTCATTGGAGATCAGGTGACATCAATAGGACATGGAAACAAACATCAGACCCAGGTGTACACAGATCACAGACAGTTTTACTGTGGTGCCACAAATGACCATGGCACTAAGAACTCATCAGTCATTGAACTGGATGTATTGTATCCTCCCAAGAAcacctcagtgtcagtcagtccctctggttCAGTGTTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAAAACTAcacctggtacagagtcaatggagACCATGTGACACAAATTGCTAATGAAAGAGAGTTAAAAACGGAAGCATCTATAGACAACCACCAGTTCTACTGTGAGGCCAGAAATGACCATGGTACAAAGAACTCATCAATCATTCTACTGAATGTGCTATaCCCACCAAAAAACAGctcagtgtcagtcagtccctctagTTCAGCAATAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCACCAGTGGGGAGCTAcacctggtacagagtcaatcaaGAACAGGTCACAGAAGTGGGATCTAGCAGAATGCTAACTATCAAGGTACCCGCAGACAACAGCCAGTTTTATTGTGAGACCAGAAATCGTCTTGGATCCCAGAACTCATCTGTCACTCAACTAGATGGGATGTATCCTGCCAAGAACACCTCATTGTCGGTCAGTCCCTCTGGTCCAGTGGTAGAGGGCAGCTCtgtgactctgacctgcagcagcAATGCCAACCCAGCAGTGAAGACCTAcacctggtacagagtcaatgggagggagggagtcattGTAGGATCTGGACAGAGCTTCACCTTCAATAAGATTGCTATCAATGATGGTGGGCGGTACTATTGCGAAGCAGAGAACAAGCATGGGGTGGACAACTCAACAACTACTTACATAGATGTGACATTTTCTCCAAAGATTCTGCCCTCCTCTCGCTGCATCAGAACTGCTGATCAGATCAACTGTACCTGTGAGAGTCATGGGAACCCCTCTCCCAAAGTGGAGTGGCGATTGGCTGGACAGCCTGTCAATCACTTTACTAACACTGTCGTCAGAGAGCGAATGGGCAGCACAGGCCTGAGAAGCTCCCTCACCACCCACCAATCACAGGAGGAGGACACGCCCCCTCTGGTCTGCCTCAGCACCAACTCTGTAGGATCTTCCAGCCTCCAGTTCTGTATTCAATGCCTGGGGAGTCACCAGGGGCTGGGCAAAAGCGTTGAAGTTCTTGAGGGTCAAGTTTCCTTGCCAATCTTCATCACTGCAATATTTGTTTCGGCATTAATGACAGCACTGATATGTGCTTTACTGTATCTACGAAAGGTTTGGTATCCTTGTTTTACGGTACTCAGAGGTCATTACAAATATTACGACAGTGATGTGGGGATGAACCTAGTTCCGACCAGTGGTGAGAGGACACAGGATCATCCTGCGCCAGAAGAAGACATATACGCCAACAGCAATGTACCGAGTCAGGCCAGGAGACAGGGACGCAAACAAGACCTAGAGGCCCCGAATCCGGGTCCCAAACCCCTGCCTTCCTCCAAAGCCATCTCTGAGACCGACCGAACCAGCCTGCCCAATCTAATCTCTGACACTGCTACAAATCCAGGAGAAGGCACTGCaaagaaggagggggaggatgtGTTTTATTCCAGTGTGAtttggaagaagaagaagtggatgaagaagaagaatgagggGTCCGTGGATGGGGGAAGGGAGGCATCTAGCGGTTCCTATCTGGAGGAGGAAAGGTGTGTGCTGGGAAATGTAGGCAGACACAGAATAAGTAAGTTACTGGAGATGGATCACCTGCAGTTTCTCTAGTTTTTCATGAATATAATGTAGGTCTATTGTACTTTCACAGAGATATATTGCTCTTAATGAAAGTATAACGCTGTCTTTTTCAccacaaaacaaataaaaacatgaaaTGTCCA

Function

NR:

description
B-cell receptor CD22-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560918.2 False 4296 mRNA 0.48 17 35760137 35777993
XM_021560927.2 True 3762 mRNA 0.48 15 35760137 35777993

Neighbor

gene id symbol gene type direction distance location
LOC110488622 LOC106605163 coding upstream 8251 35744227 ~ 35751886 (+)
LOC110488583 LOC106582465 coding upstream 186977 35567202 ~ 35573160 (+)
LOC110488573 LOC106605190 coding upstream 205898 35548120 ~ 35554239 (+)
LOC110534853 NA coding upstream 219689 35526086 ~ 35540448 (+)
LOC110488566 LOC106605239 coding upstream 247947 35506657 ~ 35512190 (+)
LOC110533750 LOC106584585 coding downstream 5962 35783955 ~ 35785664 (+)
LOC110488639 LOC106605005 coding downstream 7904 35785691 ~ 35788114 (+)
si:ch211-231m23.4 LOC106605003 coding downstream 11068 35789061 ~ 35791241 (+)
LOC110488684 LOC106605158 coding downstream 50984 35828977 ~ 35845886 (+)
LOC100653444 LOC106584591 coding downstream 77210 35855149 ~ 35865269 (+)
G136658 NA non-coding upstream 30616 35729233 ~ 35729521 (+)
G136657 NA non-coding upstream 31825 35727239 ~ 35728312 (+)
G136584 NA non-coding upstream 56209 35638113 ~ 35703928 (+)
G136589 LOC106582601 non-coding upstream 123638 35635157 ~ 35636499 (+)
G136610 NA non-coding upstream 127729 35631404 ~ 35632408 (+)
G136789 NA non-coding downstream 33741 35811734 ~ 35813460 (+)
G136805 NA non-coding downstream 102356 35880349 ~ 35887245 (+)
G136842 NA non-coding downstream 146762 35924755 ~ 35924957 (+)
G137053 NA non-coding downstream 312063 36090056 ~ 36090288 (+)
LOC110488391 LOC106582385 other upstream 576141 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 606487 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 759582 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 787336 34972449 ~ 34972801 (+)
G135916 NA other upstream 788206 34971640 ~ 34971931 (+)
G136994 NA other downstream 204839 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 321618 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 603899 36354883 ~ 36405310 (+)

Expression


Co-expression Network