LOC100653444 (LOC106584591)


Basic Information

Item Value
gene id LOC100653444
gene name LOC106584591
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35855149 ~ 35865269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561032.2
TGCACCGCAGTCTCACCACATGACAGAGAAGTCCCTCATCCGCTGACATCAAAAGGACAATCAATCAACTTTGGACTCGTCTAGTGCATTGAAAATTGTGCATTGGAGAGCGCCGCTATTTGGGAAAATTGAAGAGCTCTGATCTTCATCATAAACTGTCACTTCAATTCCAACTGTTTTCAACAGGACTTTTAAATAGGCTATAAGCTTCCTAACAAAACCGAGAATGAAGGCCTTCAGTGTTGCAGTTGCAGTGGTGGTCGTCCTCGCATGTATGTGCATCCTTGAAAGCACCGCTGTTCCTTTCTCCGAGGTGCGAGCGGAGGAGGTTGGAAGCATTGACAGTCCAGTTGGGGAACATCAACAGCCTGGCAGCGAGTCCATGCATCTGCCGGAGCATTTCAGGTTCAAGCGTCAGAGCCACCTCTCCCTGTGCCGTTGGTGCTGCAACTGCTGTCACAACAAGGGCTGTGGCTTCTGCTGCAAATTCTGAGGACCTGCCTGCACTAAAACCATCTTATTAACTTATTGCCTTTAATTTCCCCCCTATTCTTCTACATTTCTTTTGGACTCTGTGGAGAAGATGCTATCTCATTGATGTCTTTCTCACTGCACAACCTCAGTCTTGTACATAAATGTTTTGTATCATGTCGTatatgtattgtataatgacGCAGGAAAAAGACATAGCCAATTGAAATAAGTGGGgatttttattttctattgtgtAAATTGTTTTGTACATTTTCTagtttgtacatgtttgcaatatTTTCTTTCTAAGATGTTGTTTTTGTAGCTATGATAATGATTTGTTAAACGATTTCTTACAGTGAcacttttttaaatataaataaacaCATTCTTTGAATAACAAA
>XM_036947245.1
TGCACCGCAGTCTCACCACATGACAGAGAAGTCCCTCATCCGCTGACATCAAAAGGACAATCAATCAACTTTGGACTCGTCTAGTGCATTGAAAATTGTGCATTGGAGAGCGCCGCTATTTGGGAAAATTGAAGAGCTCTGATCTTCATCATAAACTGTCACTTCAATTCCAACTGTTTTCAACAGGACTTTTAAATAGGCTATAAGCTTCCTAACAAAACCGAGAATGAAGGCCTTCAGTGTTGCAGTTGCAGTGGTGGTCGTCCTCGCATGTATGTGCATCCTTGAAAGCACCGCTGTTCCTTTCTCCGAGGTGCGAGCGGAGGAGGTTGGAAGCATTGACAGTCCAGTTGGGGAACATCAACAGCCTGGCAGCGAGTCCATGCATCTGCCGGAGCATTTCAGGTTCAAGCGTCAGAGCCACCTCTCCCTGTGCCGTTGGTGCTGCAACTGCTGTCACAACAAGGGCTGTGGCTTCTGCTGCAAATTCTGAGGACCTGCCTGCACTAAAACCATCTTATTAACTTATTGCCTTTAATTTCCCCCCCTATTCTTCTAC
>TU157485
tggggggggggggcatgattGCACAATTGTGGCCAAAGTGTGTATAAATACCAGTGCACCGCAGTCTCACCACATGACAGAGAAGTCCCTCATCCGCTGACATCAAAAGGACAATCAATCAACTTTGGACTCGTCTAGTGCATTGAAAATTGTGCATTGGAGAGCGCCGCTATTTGGGAAAATTGAAGAGCTCTGATCTTCATCATAAACTGTCACTTCAATTCCAACTGTTTTCAACAGGACTTTTAAATAGGCTATAAGCTTCCTAACAAAACCGAGAATGAAGGCCTTCAGTGTTGCAGTTGCAGTGGTGGTCGTCCTCGCATGTATGTGCATCCTTGAAAGCACCGCTGTTCCTTTCTCCGAGGTGCGAGCGGAGGAGGTTGGAAGCATTGACAGTCCAGTTGGGGAACATCAACAGCCTGGCAGCGAGTCCATGCATCTGCCGGAGCATTTCAGGTTCAAGCGTCAGAGCCACCTCTCCCTGTGCCGTTGGTGCTGCAACTGCTGTCACAACAAGGGCTGTGGCTTCTGCTGCAAATTCTGAGGACCTGCCTGCACTAAAACCATCTTATTAACTTATTGCCTTTAATTTCCCCCCTATTCTTCTACATTTCTTTTGGACTCTGTGGAGAAGATGCTATCTCATTGATGTCTTTCTCACTGCACAACCTCAGTCTTGTACATAAATGTTTTGTATCATGTCGTatatgtattgtataatgacGCAGGAAAAAGACATAGCCAATTGAAATAAGTGGGgatttttattttctattgtgtAAATTGTTTTGTACATTTTCTagtttgtacatgtttgcaatatTTTCTTTCTAAGATGTTGTTTTTGTAGCTATGATAATGATTTGTTAAACGATTTCTTACAGTGAcacttttttaaatataaataaa
>TU157483
GAGAAGTCCCTCATCCGCTGACATCAAAAGGACAATCAATCAACTTTGGACTCGTCTAGTGCATTGAAAATTGTGCATTGGAGAGCGCCGCTATTTGGGAAAATTGAAGAGCTCTGATCTTCATCATAAACTGTCACTTCAATTCCAACTGTTTTCAACAGGACTTTTAAATAGGCTATAAGCTTCCTAACAAAACCGAGAATGAAGGCCTTCAGTGTTGCAGTTGCAGTGGTGGTCGTCCTCGCATGTATGTGCATCCTTGAAAGCACCGCTGTTCCTTTCTCCGAGGTGCGAGCGGAGGAGGTTGGAAGCATTGACAGTCCAGTTGGGGAACATCAACAGCCTGGCAGCGAGTCCATGCATCTGCCGGAGCATTTCAGGTTCAAGCGTCAGAGCCACCTCTCCCTGTGCCGTTGGTGCTGCAACTGCTGTCACAACAAGGGCTGTGGCTTCTGCTGCAAATTCTGAGGACCTGCCTGCACTAAAACCATCTTATTAACTTATTGCCTTTAATTTCCCCCCTATTCTTCTACATTTCTTTTGGACTCTGTGGAGAAGATGCTATCTCATTGATGTCTTTCTCACTGCACAACCTCAGTCTTGTACATAAATGTTTTGTATCATGTCGTatatgtattgtataatgacGCAGGAAAAAGACATAGCCAATTGAAATAAGTGGGgatttttattttctattgtgtAAATTGTTTTGTACATTTTCTagtttgtacatgtttgcaatatTTTCTTTCTAAGATGTTGTTTTTGTAGCTATGATAATGATTTGTTAAACGATTTCTTACAGTGAcacttttttaaatataaataaacaCATTCTTTGAATAACAAACATGGTTGTTTCTGAATTATGAATCTGCTATAGATGTGTACCCTGTGGCTAAATGTTCAGGCCTGACAGCCAGAGGCTTATTCAAATTAGTCGCGTCTGGGAATGGAAtccacagtgccttcagaaagtattcacacctcttgacattttccacatttgttgtgttacagcttgaatttaaaattgattaagttgagattttgtgtcactggcctacataatgtcgaagtggaattatgtttttagaaatgtttacaaatgaataaaaaaacaaaaagctg
>TU157484
GAGAAGTCCCTCATCCGCTGACATCAAAAGGACAATCAATCAACTTTGGACTCGTCTAGTGCATTGAAAATTGTGCATTGGAGAGCGCCGCTATTTGGGAAAATTGAAGAGCTCTGATCTTCATCATAAACTGTCACTTCAATTCCAACTGTTTTCAACAGGACTTTTAAATAGGCTATAAGCTTCCTAACAAAACCGAGAATGAAGGCCTTCAGTGTTGCAGTTGCAGTGGTGGTCGTCCTCGCATGTATGTTCATCCTTGAAAGCACCGCTGTTCCTTTCTCCGAGGTATGGCTAATTTTCTAACAC
>TU157486
GAGAAGTCCCTCATCCGCTGACATCAAAAGGACAATCAATCAACTTTGGACTCGTCTAGTGCATTGAAAATTGTGCATTGGAGAGCGCCGCTATTTGGGAAAATTGAAGAGCTCTGATCTTCATCATAAACTGTCACTTCAATTCCAACTGTTTTCAACAGGACTTTTAAATAGGCTATAAGCTTCCTAACAAAACCGAGAATGAAGGCCTTCAGTGTTGCAGTTGCAGTGGTGGTCGTCCTCGCATGTATGTGCATCCTTGAAAGCACCGCTGTTCCTTTCTCCGAGGTGCGAGCGGAGGAGGTTGGAAGCATTGACAGTCCAGTTGGGGAACATCAACAGCCTGGCAGCGAGTCCATGCATCTGCCGGAGCATTTCAGGTTCAAGCGTCAGAGCCACCTCTCCCTGTGCCGTTGGTGCTGCAACTGCTGTCACAACAAGGGCTGTGGCTTCTGCTGCAAATTCTGAGGACCTGCCTGCACTAAAACCATCTTATTAACTTATTGCCTTTAATTTCCCCCCTATTCTTCTACATTTCTTTTGGACTCTGTGGAGAAGATGCTATCTCATTGATGTCTTTCTCACTGCACAACCTCAGTCTTGTACATAAATGTTTTGTATCATGTCGTatatgtattgtataatgacGCAGGAAAAAGACATAGCCAATTGAAATAAGTGGGgatttttattttctattgtgtAAATTGTTTTGTACATTTTCTagtttgtacatgtttgcaatatTTTCTTTCTAAGATGTTGTTTTTGTAGCTATGATAATGATTTGTTAAACGATTTCTTACAGTGAcacttttttaaatataaataaa
>TU157487
GAGAAGTCCCTCATCCGCTGACATCAAAAGGACAATCAATCAACTTTGGACTCGTCTAGTGCATTGAAAATTGTGCATTGGAGAGCGCCGCTATTTGGGAAAATTGAAGAGCTCTGATCTTCATCATAAACTGTCACTTCAATTCCAACTGTTTTCAACAGGACTTTTAAATAGGCTATAAGCTTCCTAACAAAACCGAGAATGAAGGCCTTCAGTGTTGCAGTTGCAGTGGTGGTCGTCCTCGCATGTATGTGCATCCTTGAAAGCACCGCTGTTCCTTTCTCCGAGGTGCGAGCGGAGGAGGTTGGAAGCATTGACAGTCCAGTTGGGGAACATCAACAGCCGGGCGGCGAGTCCATGCGTCCACCAGTACGTTCAATTGAGTGAATTAATGAAGTAATTACCTTTAGCAAATTAAAATCGACGTGGTTGCTTTTGCCCCGCAGAATTGAATTAACCTACTTGCGCTACCTGTTATCGTTTGATTGTGAGCCGTTAGAGAAGGCTTCAGGGCGAAC

Function

NR:

description
hepcidin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561032.2 False 878 mRNA 0.41 3 35855203 35856420
XM_036947245.1 False 559 mRNA 0.48 4 35855203 35865269
TU157485 False 912 TUCP 0.49 3 35855149 35856400
TU157483 False 1134 lncRNA 0.46 3 35855228 35856701
TU157484 False 309 lncRNA 0.38 2 35855228 35864731
TU157486 False 833 TUCP 0.54 3 35855228 35856400
TU157487 True 518 lncRNA 0.50 3 35855228 35865035

Neighbor

gene id symbol gene type direction distance location
LOC110488684 LOC106605158 coding upstream 9317 35828977 ~ 35845886 (+)
si:ch211-231m23.4 LOC106605003 coding upstream 63962 35789061 ~ 35791241 (+)
LOC110488639 LOC106605005 coding upstream 67089 35785691 ~ 35788114 (+)
LOC110533750 LOC106584585 coding upstream 69539 35783955 ~ 35785664 (+)
LOC110488629 LOC106605006 coding upstream 77210 35760137 ~ 35777993 (+)
iglon5 iglon5 coding downstream 63631 35928900 ~ 36069412 (+)
LOC110488747 LOC106605155 coding downstream 244020 36109289 ~ 36113122 (+)
LOC110533753 LOC106605184 coding downstream 252797 36118066 ~ 36123229 (+)
LOC110488805 LOC106605152 coding downstream 351751 36217020 ~ 36227769 (+)
LOC101268898 NA coding downstream 364246 36229498 ~ 36233187 (+)
G136789 NA non-coding upstream 41743 35811734 ~ 35813460 (+)
G136658 NA non-coding upstream 125682 35729233 ~ 35729521 (+)
G136657 NA non-coding upstream 126891 35727239 ~ 35728312 (+)
G136584 NA non-coding upstream 151275 35638113 ~ 35703928 (+)
G136589 LOC106582601 non-coding upstream 218704 35635157 ~ 35636499 (+)
G136805 NA non-coding downstream 15080 35880349 ~ 35887245 (+)
G136842 NA non-coding downstream 59486 35924755 ~ 35924957 (+)
G137053 NA non-coding downstream 224787 36090056 ~ 36090288 (+)
G137054 NA non-coding downstream 226124 36091393 ~ 36091725 (+)
G137055 NA non-coding downstream 226959 36092228 ~ 36092555 (+)
LOC110488391 LOC106582385 other upstream 671207 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 701553 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 854648 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 882402 34972449 ~ 34972801 (+)
G136994 NA other downstream 117563 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 234342 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 516623 36354883 ~ 36405310 (+)
G139004 NA other downstream 1911792 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 2054466 37919735 ~ 37940714 (+)

Expression


Co-expression Network