XLOC_002062 (golga7)


Basic Information

Item Value
gene id XLOC_002062
gene name golga7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20364009 ~ 20372269 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003996
AGAGATTATGATGTGCTGTCTATGCTTGCAAAAGGGCTAATCTATCTAAGctatatctatctatttatctgtctgtctatctgcctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgcctgtctgttagAGATTAGAACAGCAATGCTGTCTATGCTTGCAAAAGGCTAacgaaatgtacatttaaaaaaggatcaCTCATTTGATTAATAATAGTCCTACCCAAGCTACTAAACTAAAAGTTTAATTGCAATCTAGAACAAATTTACCAATGCGATGAACAAATGGCTACAGTTTGGAATTGACCAAGCATCggaactaataaataaatgtaaaagttcCTACCGGACTGTGTTTTGAGGAGGACGAGGAGTCTGAATAACAGGAAGAGGAGAAGCAGCCACTATGGCGGAGACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGGattgACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAAGTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTCGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACACAccaaaggtaatttttttttttctgtcatggtCCTCTTTGGTCATTGTTGAATATAAGCTActttgtaaataattgtaaacTATGTTTTGTTAGAGATTTACTACAGTTTTTCAATAGCCCCTTTCGCACATGcaaacctttccagaaaattacctGCAATtatctggaaaggtctgtatgtgtgaactggccctttttgaaaatataaaataaatcaattccaGCAATTTACCGGAATGCGAAGTTGTAAGATTAATGGTAATTTGCCAGAATTACAGTTatactcagaattattagccccctttttatttatttatttatttttaaatatttcccaaatgatgttttacagtgcaaggacatgttcacagtatgtctgatcatattttttcttcttgagaaagtcttatttgttttatttcggctagaataaaagcagtttaaaattttttaaacaccattttaaggaagaaaattattagcccctttaagcaaaatattttttgatggtctacagaacaaaccatcgttatacaattacttgcctaattaccatactTGCTTAGTTACcataatttacctagttaagcctttaatgtcactgtaagctgtatagaagtgtcttgaaaaaatatctagtgaaatattttttactgtcatcaaggcaaagataaaacaaatcagttattagaaattagttataaaactattatgtttagaaatgtgtaatgtgtttcagaaaaaaataaacaaggggggctaataattctgacttcaactgtatgaacacagagctcatttctggttaatgatgtcagaatttaacagtattttggaatgaatgttTGAATGGTGTCTTCTGGAAAAGTTTCCCTGTTTGAGGAGCATCAGAACAAGTgttagcagatattaagcagaagaGCTTTCACACTAGAAGACGTTTCATAGGTTTATATAACCGATTTCTAATCACCACAACCACATGGTGCAAAAAATCCTTGGTATATTTCTAATACTCTAAATGACTGCTTGTAGTTGCATAATAGTCAGCAGaaagcatatgtgtgtgtgcttttccATTTGATATTTGTTAAAAGTCCATTGCTTAGTAGCTGCAGCATgttgttttctttctttaataataCAAAGTTGTGTTTTCTTTCTGCAGGATCATGTTTGGAATGTGATTGCTGGCCTGCTGGACTCAGAACCTGCTTCTCCGTCTCATGATATCACAACCCTACTGCTTTAAATGTAGATagcatcatttttttattattatttagttttggacagagggagagagtgaaatataaaatatatcttaaagaAACTCTCCAAATCAGCTTTCCCTCAGTTAGCAGCTTTCCGATGTCTTACTTAAACCGAGTTCTTTTTAAATCTATGTTGTGCCATGTAATTTTATATCGCATTGTTTGATTTCTTTACAGAGCGTTTCCCTTCTCTCGTTTTCTGTATATACTTGTCTTGAATGGGAAGTATAGATTAAGTGCACAATGTTCTGCCACAATACAGTTGCATATTATTAGGATCTTTTGTGACTGCGTTTTCGTATTAACAATATGTTTTCAAGAAATTCGATCAAATATGTGCTTGTAGAAATGTCTATAAATACATGAAGAAGCTTTGAATGTGTACGAGGAAATTTGAGATGGATAATTAGTTTgttgtaattaattaatgcaaGTACTAAGTTTAGCTGCTTTACTAAGCTCCATTCCTTTTCCCTCTTTGAAAAACAGCTTGTGTTTTCTATTTTAACACTACATTTGACTCTATTTACCAATGAACTACTGTACTTTTATCGGGGTCTGCAATATAATCCTTATTACAAACAAACGCCATCGAATCCTTAAAAGGCATGGTTTGCATTTAATATTGCATCTCCAGCTTGTATTTCAGACTCTTGTCAGTTCGACCTGTTTCTTGCGTAAATCTTTTTATCAGTGTTGTATCATAATGTCTTTTTTGAAAATCTTTTGACACTTATTTAAATGTATCGTACAATAAATAGCGTTTTCTTGAACAAATTAAttgcattgttttttgttttatacgttcaatttatttattttttttgtctgtttggaaGAGCAACGCATGTGAGTTAGAATTAACCTCTTTGTACCCGAATTATATTTAGAAAGATGTAAAGTT
>TCONS_00003997
TTAGAACAGCAATGCTGTCTATGCTTGCAAAAGGCTAacgaaatgtacatttaaaaaaggatcaCTCATTTGATTAATAATAGTCCTACCCAAGCTACTAAACTAAAAGTTTAATTGCAATCTAGAACAAATTTACCAATGCGATGAACAAATGGCTACAGTTTGGAATTGACCAAGCATCggaactaataaataaatgtaaaagttcCTACCGGACTGTGTTTTGAGGAGGACGAGGAGTCTGAATAACAGGAAGAGGAGAAGCAGCCACTATGGCGGAGACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGGattgACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAAGTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTCGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACACAccaaagGATCATGTTTGGAATGTGATTGCTGGCCTGCTGGACTCAGAACCTGCTTCTCCGTCTCATGATATCACAACCCTACTGCTTTAAATGTAGATagcatcatttttttattattatttagttttggacagagggagagagtgaaatataaaatatatcttaaagaAACTCTCCAAATCAGCTTTCCCTCAGTTAGCAGCTTTCCGATGTCTTACTTAAACCGAGTTCTTTTTAAATCTATGTTGTGCCATGTAATTTTATATCGCATTGTTTGATTTCTTTACAGAGCGTTTCCCTTCTCTCGTTTTCTGTATATACTTGTCTTGAATGGGAAGTATAGATTAAGTGCACAATGTTCTGCCACAATACAGTTGCATATTATTAGGATCTTTTGTGACTGCGTTTTCGTATTAACAATATGTTTTCAAGAAATTCGATCAAATATGTGCTTGTAGAAATGTCTATAAATACATGAAGAAGCTTTGAATGTGTACGAGGAAATTTGAGATGGATAATTAGTTTgttgtaattaattaatgcaaGTACTAAGTTTAGCTGCTTTACTAAGCTCCATTCCTTTTCCCTCTTTGAAAAACAGCTTGTGTTTTCTATTTTAACACTACATTTGACTCTATTTACCAATGAACTACTGTACTTTTATCGGGGTCTGCAATATAATCCTTATTACAAACAAACGCCATCGAATCCTTAAAAGGCATGGTTTGCATTTAATATTGCATCTCCAGCTTGTATTTCAGACTCTTGTCAGTTCGACCTGTTTCTTGCGTAAATCTTTTTATCAGTGTTGTATCATAATGTCTTTTTTGAAAATCTTTTGACACTTATTTAAATGTATCGTACAATAAATAGCGTTTTCTTGAACAAA
>TCONS_00003998
GGAAGAGGAGAAGCAGCCACTATGGCGGAGGTACGTTGATAAAATATCAAATCTTACACTTTTCAGTTATTCGCTGAAGTTGATTGACGTCTAAAATCACACGTTGTAATACACATTTTTCTATCAAACTATTTGGATTACACACAGACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGGattgACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAAGTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTCGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACACAccaaagGATCATGTTTGGAATGTGATTGCTGGCCTGCTGGACTCAGAACCTGCTTCTCCGTCTCATGATATCACAACCCTACTGCTTTAAATGTAGATagcatcatttttttattattatttagttttggacagagggagagagtgaaatataaaatatatcttaaagaAACTCTCCAAATCAGCTTTCCCTCAGTTAGCAGCTTTCCGATGTCTTACTTAAACCGAGTTCTTTTTAAATCTATGTTGTGCCATGTAATTTTATATCGCATTGTTTGATTTCTTTACAGAGCGTTTCCCTTCTCTCGTTTTCTGTATATACTTGTCTTGAATGGGAAGTATAGATTAAGTGCACAATGTTCTGCCACAATACAGTTGCATATTATTAGGATCTTTTGTGACTGCGTTTTCGTATTAACAATATGTTTTCAAGAAATTCGATCAAA
>TCONS_00003999
GGCGGAGGTACGTTGATAAAATATCAAATCTTACACTTTTCAGTTATTCGCTGAAGTTGATTGACGTCTAAAATCACACGTTGTAATACACATTTTTCTATCAAACTATTTGGATTACACACAGGTGTTTATAATCCCGTTTATTTGACACGTTAGCGCTTTTCTAGTGGTCTCCAAAGATAATTATCGACGTCGATATCTAACGTTAACTATCCTCTCGCTCAGTGTCAGCGCATATACATGACTATAAAACTAGTTGTCGAGTTTAAAACGAGCTCCGCGTTATTTCATTTTTACGTGTTTGAGGTAGGGCGTTGTGTTTGTTGTTTCGGTGTATATGCTCACGATTTCCGGTGTTTTTGATGATGACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGGattgACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAAGTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTCGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACA
>TCONS_00004000
TACACTTTTCAGTTATTCGCTGAAGTTGATTGACGTCTAAAATCACACGTTACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGGattgACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAAGTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTCGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACACAccaaagGATCATGTTTGGAATGTGATTGCTGGCCTGCTGGACTCAGAACCTGCTTCTCCGTCTCATGATATCACAACCCTACTGCTTTAAATGTAGATagcatcatttttttattattatttagttttggacagagggagagagtgaaatataaaatatatcttaaagaAACTCTCCAAATCAGCTTTCCCTCAGTTAGCAGCTTTCCGATGTCTTACTTAAACCGAGTTCTTTTTAAATCTATGTTGTGCCATGTAATTTTATATCGCATTGTTTGATTTCTTTACAGAGCGTTTCCCTTCTCTCGTTTTCTGTATATACTTGTCTTGAATGGGAAGTATAGATTAAGTGCACAATGTTCTGCCACAATACAGTTGCATATTATTAGGATCTTTTGTGACTGCGTTTTCGTATTAACAATATGTTTTCAAGAAATTCGATCAAA
>TCONS_00004001
GTCGATATCTAACGTTAACTATCCTCTCGCTCAGTGTCAGCGCATATACATGACTATAAAACTAGTTGTCGAGTTTAAAACGAGCTCCGCGTTATTTCATTTTTACGTGTTTGAGACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGGattgACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAAGTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTCGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACACAccaaagGATCATGTTTGGAATGTGATTGCTGGCCTGCTGGACTCAGAACCTGCTTCTCCGTCTCATGATATCACAACCCTACTGCTTTAAATGTAGATagcatcatttttttattattatttagttttggacagagggagagagtgaaatataaaatatatcttaaagaAACTCTCCAAATCAGCTTTCCCTCAGTTAGCAGCTTTCCGATGTCTTACTTAAACCGAGTTCTTTTTAAATCTATGTTGTGCCATGTAATTTTATATCGCATTGTTTGATTTCTTTACAGAGCGTTTCCCTTCTCTCGTTTTCTGTATATACTTGTCTTGAATGGGAAGTATAGATTAAGTGCACAATGTTCTGCCACAATACAGTTGCATATTATTAGGATCTTTTGTGACTGCGTTTTCGTATTAACAATATGTTTTCAAGAAATTCGATCAAA
>TCONS_00004002
atgaattactTAAATCACTTATTATGCACCTCTCAAGTCCAGGCTGAAATGCTGGGCTGACCATGCTTTCACAGTAACTGGTCCTAGATAGTGGAATGCTCTGCCCTTCTGTATTAGATTTGTCATCTCTGTCTGTCTTTAAATGTAGGTTAAAAACCTacctttgatttggcattttatccaAACGAATTGTTTAAGctataattttacatatttttatgatttgtattgtattgtatttgtatttttatgatttgtgtttaatagtgctatataaataaaattgacattccTTAACTTAAGATTTTTAAGGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACACAccaaagGATCATGTTTGGAATGTGATTGCTGGCCTGCTGGACTCAGAACCTGCTTCTCCGTCTCATGATATCACAACCCTACTGCTTTAAATGTAGATagcatcatttttttattattatttagttttggacagagggagagagtgaaatataaaatatatcttaaagaAACTCTCCAAATCAGCTTTCCCTCAGTTAGCAGCTTTCCGATGTCTTACTTAAACCGAGTTCTTTTTAAATCTATGTTGTGCCATGTAATTTTATATCGCATTGTTTGATTTCTTTACAGAGCGTTTCCCTTCTCTCGTTTTCTGTATATACTTGTCTTGAATGGGAAGTATAGATTAAGTGCACAATGTTCTGCCACAATACAGTTGCATATTATTAGGATCTTTTGTGACTGCGTTTTCGTATTAACAATATGTTTTCAAGAAATTCGATCAAA

Function

symbol description
golga7 Predicted to be involved in Golgi to plasma membrane protein transport; peptidyl-L-cysteine S-palmitoylation; and protein targeting to membrane. Predicted to be located in membrane. Predicted to be part of palmitoyltransferase complex. Predicted to be active in Golgi stack. Orthologous to human GOLGA7 (golgin A7).

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0043001 Golgi to plasma membrane protein transport biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005795 Golgi stack cellular_component
GO:0002178 palmitoyltransferase complex cellular_component
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-142 Predicted to be involved in Golgi to plasma membrane protein transport; peptidyl-L-cysteine S-palmitoylation; and protein targeting to membrane. Predicted to be located in membrane. Predicted to be part of palmitoyltransferase complex. Predicted to be active in Golgi stack. Orthologous to human GOLGA7 (golgin A7).

Ensembl:

ensembl_id ENSDARG00000057676

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003996 False 3034 mRNA 0.35 5 20364009 20372269
TCONS_00003997 False 1599 mRNA 0.38 6 20364155 20372142
TCONS_00003998 False 1021 lncRNA 0.41 6 20364406 20371698
TCONS_00003999 False 795 processed_transcript 0.44 5 20364429 20370089
TCONS_00004000 False 925 lncRNA 0.42 6 20364460 20371698
TCONS_00004001 False 989 lncRNA 0.42 6 20364620 20371698
TCONS_00004002 True 808 lncRNA 0.33 2 20369729 20371698

Neighbor

gene id symbol gene type direction distance location
XLOC_002061 TCIM coding upstream 106834 20256454 ~ 20257175 (+)
XLOC_002060 ppp3ccb coding upstream 129626 20180163 ~ 20234383 (+)
XLOC_002059 xpo7 coding upstream 217465 20070178 ~ 20146544 (+)
XLOC_002058 CABZ01059623.1 coding upstream 638415 19602334 ~ 19725594 (+)
XLOC_002057 zgc:173837 coding upstream 766000 19595009 ~ 19598009 (+)
XLOC_002063 NA coding downstream 4819 20377088 ~ 20381313 (+)
XLOC_002064 r3hcc1 coding downstream 19814 20392083 ~ 20402161 (+)
XLOC_002065 NA coding downstream 76198 20448467 ~ 20452630 (+)
XLOC_002066 NA coding downstream 129507 20501776 ~ 20502178 (+)
XLOC_002067 letm2 coding downstream 217700 20589969 ~ 20626795 (+)
XLOC_002056 CABZ01059627.3 non-coding upstream 774276 19583289 ~ 19589733 (+)
XLOC_002045 AL928714.1 non-coding upstream 1561574 18798927 ~ 18802435 (+)
XLOC_002043 NA non-coding upstream 2081574 18240550 ~ 18282435 (+)
XLOC_002042 NA non-coding upstream 2292503 18007123 ~ 18071506 (+)
XLOC_002069 NA non-coding downstream 271066 20643335 ~ 20645459 (+)
XLOC_002070 NA non-coding downstream 292747 20665016 ~ 20667861 (+)

Expression


Co-expression Network