LOC110488747 (LOC106605155)


Basic Information

Item Value
gene id LOC110488747
gene name LOC106605155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36109289 ~ 36113122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561090.2
ATACTGTCAGAGTCACTCCCTTAACACCAGGCTAAACTTCATTCCTGCCATACTGGATTGTGGGAAGGGAAGAAAAACAGGTACACACTTACATACAGTAGCTATTTTAAGTGCCAGTAGGCATCAAGTTTGATGGCCTTCAAATCATAAAACATTAGGCAAGAAAACAGAAACACATCAAGCTTGACCTGTACGTTCACCCTACAGAATATCCAAATGAAAAAGCATTGTAAAATCTAAATAGCTCTGCAGATGTGATGGAAACACAGCACATCCTGGTCTGGCGTATTTGTCTGATCCTGGCCCTCTTGCCCCACCCGCACCAATGCCTGTCAGTGCATTTCCAGAACAAGGGTCTCCTTTATGTGGCTCTGGGGAGAGACCTGGTCCTGCGGACCCAGTTCCAGATTACACCAACAGAGAAGATCGTCATGGTGATTTGGGACCGCCAGACTGAGAAGGGTCAGGGACAGGTCAGGCTGGCCGATCACCAAGATGCACCTGGCAATCCTCTAGACCAGAAGGGGGCCTTATTTAGGGTGGAGAATATAAGATCATTTGACTATggagtctacaccatcactgtgacTGACCAGAAGGGGAACGAGCAATCAGCAAATATAGTTGTTCGAGAGATTGTTGCTGCTCCTGTGGCGTCTTTGTCGCTCCAGTGTGAGGTGGCCAATGACAGGGCACAGTGGGACAGCCCAGTGTTTTCCTGGTTGGTGGATGGGGTAGAGCTGTCCAATCAGACAGCCAATATCTCTGCAGATGGCAAGAGACTCGACGTGTCCGGAATGAAGGGCCACAACTACACCTGTGTTGTCAACAGCAGTCTGGGGACAAGTGTCACACACTACGTCACTGATTCTCCAACACCATCCCAAAGTAACCAATCCTGTAAGACTCTATGTGGTGTACTATTGAGCATCGTCCTAGTGCTTCTAATCACATGTGGATATCTCTACTGGAAATGCGTACAGCGGAGGACGAATGGGAATACATGACCTTTAGGAGGTCCATCGCGTTCCGTTATCAGTCTTATCTATGACACTTTGTTACACACTGCACGATCACACAAGTCTTTGGCACATACGGACACAGTGATATGAGACGGTAATATTCTGTTGCAACAAGTCACAATACCAGACCAAATATCATTCCTATCAAGAGCTGTGGCCCTATTCGCCATCAATACAATATATTGAGATGCCTATttatcaaattaaattgtattggtcacatacacatatttagcagatgttattgcgggtatagcgaaatgcttgttattGGTGTGTTTGTGGTATTTATTGTTGCGAAGTCCACACATATATTTTCACTAATTATGTCTttgtatctttttttttaaagtactgtATGCCATCACATTTACATTGTGCACATGTACAAATATGTTCAAATTAACCTAAACCTACTTTTGTGATGCCTATGTATGATATAAAGCAAATgggattttatttttaaattattgTGACGGTGCATGTGTGCATTTAACCTATTTCATAACCTGTAAGGAAATCTTTGTAAGCGTCCACTTTGCTACACTTCCATAGGAGACAGTGAAGAGACATAGAAACACAGCAGTCTGGATGAGTGAGGAAAAGCACAGCACCACCTATTTAATAGCGCCATCTACTGGCTTGTTTTAGAAATTCCTCTATTCATAATATCACTTCAAATTGCAACTGGTTTGCAACATCCTACCTGACCGCTTGGAGgtgtctgcatggtcctaaagaaCACTGTTGCCTCGTTTTGTGTGACATTCTAATGATAAAACTTGGGGGGGGACAAAAAAGCTcattcagaatgtgggggggacatTTCGTACCTTGAATTGAAAATACTGTAGCGTATTGTTAATTGTTTCTGCTAATGTAGATAAGATGATTTAATTAAAGTcgcactccag

Function

NR:

description
uncharacterized protein LOC110488747

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561090.2 True 1936 mRNA 0.43 6 36109289 36113122

Neighbor

gene id symbol gene type direction distance location
iglon5 iglon5 coding upstream 39877 35928900 ~ 36069412 (+)
LOC100653444 LOC106584591 coding upstream 244020 35855149 ~ 35865269 (+)
LOC110488684 LOC106605158 coding upstream 263403 35828977 ~ 35845886 (+)
si:ch211-231m23.4 LOC106605003 coding upstream 318048 35789061 ~ 35791241 (+)
LOC110488639 LOC106605005 coding upstream 321175 35785691 ~ 35788114 (+)
LOC110533753 LOC106605184 coding downstream 4944 36118066 ~ 36123229 (+)
LOC110488805 LOC106605152 coding downstream 103898 36217020 ~ 36227769 (+)
LOC101268898 NA coding downstream 116393 36229498 ~ 36233187 (+)
LOC118936744 LOC106605183 coding downstream 162619 36275741 ~ 36278586 (+)
LOC110488849 LOC106605147 coding downstream 241761 36354883 ~ 36405310 (+)
G137059 NA non-coding upstream 6607 36102314 ~ 36102682 (+)
G136958 LOC106605156 non-coding upstream 7282 36101634 ~ 36102007 (+)
G137055 NA non-coding upstream 16734 36092228 ~ 36092555 (+)
G137054 NA non-coding upstream 17564 36091393 ~ 36091725 (+)
G137053 NA non-coding upstream 19001 36090056 ~ 36090288 (+)
G137067 NA non-coding downstream 1065 36114187 ~ 36114418 (+)
G137070 NA non-coding downstream 3539 36116661 ~ 36116868 (+)
G137183 NA non-coding downstream 12792 36125914 ~ 36126237 (+)
G137190 NA non-coding downstream 16775 36129897 ~ 36130119 (+)
G137058 LOC106605156 other upstream 9012 36099611 ~ 36100277 (+)
G136994 NA other upstream 71548 35982832 ~ 36037741 (+)
LOC110488391 LOC106582385 other upstream 925293 35180650 ~ 35184002 (+)
G139004 NA other downstream 1663939 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1806613 37919735 ~ 37940714 (+)
G139101 NA other downstream 1830620 37943742 ~ 37944012 (+)
G139179 NA other downstream 1938237 38051359 ~ 38051744 (+)

Expression


Co-expression Network