LOC110533753 (LOC106605184)


Basic Information

Item Value
gene id LOC110533753
gene name LOC106605184
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36118066 ~ 36123229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034524.1
TGAGTGGTGGACTTTATTGTGCAGGAAAGGGGAAATTGCACCGTGACGTCCAAGTACCTAACTGAGTACAAAGTCCTGCACCAGACTGCAGTCTATCAGAGCAACTTTAAATTCACTCCAGCCTTTTCTTTGGGTTGTTTTTGATGGTTGACATTTTTCTGTTCTATTTGCTAAAGGATTTTTTTGGTTTTTATATTGTAAAACTGCATCCAAGCTTCCTGGAGTGCCGTGCCCTACCCCTGGAAAGTGGGCTTGTTTTTGAATGAATGCACTCTTGCCACTTCCAGACTCATAATCTCTGACTCCAAATCCATGTTACTGTTGGGAAGgTGCCATGAGGCTGCAACACTGCCTCTCCTGGAGCCTCTCTTTGCTACTTCTGCTCTTGTTGACTTGTGGGTACCAGTGCGTGTCGGTCCACTTCCAGACCCCGCAGCCGGTCAATGTACTCCCAGCTGGACGTCTAGTTCTCCAGGTCCAGATCGACCGCGATCCCAAAGAAAAGATCTCCATGATAACCTGGTAGCGGGAGCCAGAGAACGCAAAAAACCCCGGGAATCCTGGGAAAATGATGTTGATTACGTTCTCCGGTCAAGAAAAACGCTTGGACAGGCGTCTGAGTCTGGAGCAGCAAGGGTCAATACTGAAGCTAGAGGGCTTTGGCGTGGCGGACAGCAGAGTGTACATCGTGACCGTCACTGACCAGGCTGGCGTCAAGACCTGTGCACAGTGTATCGTCAAGGAGTACGCCTCATACTTCTCAAGTCACCACCACCAAGCCTCAGTGGACAACACGCTCAACTCACCCTGTTACTTCACAACACAACcaacctctgttctctctccactctgtccctctctcacctctttgAGACAATTTTCAGTTGCAACTTCCAAGTCTCACCTTTCTCACACCTGGTctccttctctgttctctgtctcttgtCTTGGCTGTGCACCACCCCTCAGTGAGTGGAGCAGTGCTAGCTTTTCTACTGTGGAGGCACggtcacacacactgacagtcaCACAGTGCAGATACACATTTCATTTTGAGCTACGGTACGTAATGGAAGATAAAGCCGTATATAGCAAGGAAACAGAGGTCGCTGACAGACGGCAGAAGGGAAAAGAtaaaagaaatgtaaaaaaataaataaaa
>TU157801
TTGTTTTTGATGGTTGACATTTTTCTGTTCTATTTGCTAAAGGATTTTTTTGGTTTTTATATTGTAAAACTGCATCCAAGCTTCCTGGAGTGCCGTGCCCTACCCCTGGAAAGTGGGCTTGTTTTTGAATGAATGCACTCTTGCCACTTCCAGACTCATAATCTCTGACTCCAAATCCATGTTACTGTTGGGAAGgTGCCATGAGGCTGCAACACTGCCTCTCCTGGAGCCTCTCTTTGCTACTTCTGCTCTTGTGAGACACGGGCGATACAGtaacagaggagagaggcttCAGGAGCATTTTGAGGACAACTAGTAATGGTGAACCATTGATTACAGTACCCAAGTACTTTCGCTACACTCCCCAACTCAAAGATGGACTCATGAAAGGACAGTAAGTGTGTAAAACGCTTTGGGAGGAGCTTCCTTCCCTGTGAGCAGCAAGACCTTTCAGTGCATTGGAACAATGTGGAAAGCGAACTGCTTTGTTGGCCAATTGACAAGTTCTAAAATTGGAAATATCAACTTTTTCCCAGTGTGTTGCCTATTTTTGTAGTAGCTATCATTTTTACCCCGCCTCTCATTATACTGAACTACACTAGACATTCTTACCCCGCCTCTCATTGTACTGAACTACACTAGACATTTTTACCCCGCCTCTCATTGTACTGAACTACACTTGACATTTTTTTATAGAACGCTCTAAAATGATTCATTTTAAAAACAATTCCTTATTCTGTAATTTTTCTGCATTGTAAACATATTGTATATTTTGCTGTGTATTCTTTGTAGTAAAAAGCAGTTTTTAAACTGTGTGAGGCTTCAGTTAAATTGGTCGCTATTGTAAATCCACAATTCAGTCAGGGAATGGGAGTCAAAGTACAACCGCTCCATACGTGGTGAATTTCAAAACGCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106582803 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034524.1 False 1162 mRNA 0.48 4 36118066 36122250
TU157801 True 916 lncRNA 0.41 3 36118200 36123229

Neighbor

gene id symbol gene type direction distance location
LOC110488747 LOC106605155 coding upstream 4944 36109289 ~ 36113122 (+)
iglon5 iglon5 coding upstream 48654 35928900 ~ 36069412 (+)
LOC100653444 LOC106584591 coding upstream 252797 35855149 ~ 35865269 (+)
LOC110488684 LOC106605158 coding upstream 272180 35828977 ~ 35845886 (+)
si:ch211-231m23.4 LOC106605003 coding upstream 326825 35789061 ~ 35791241 (+)
LOC110488805 LOC106605152 coding downstream 94770 36217020 ~ 36227769 (+)
LOC101268898 NA coding downstream 107265 36229498 ~ 36233187 (+)
LOC118936744 LOC106605183 coding downstream 153491 36275741 ~ 36278586 (+)
LOC110488849 LOC106605147 coding downstream 232633 36354883 ~ 36405310 (+)
LOC110488866 LOC106582899 coding downstream 298501 36420751 ~ 36656060 (+)
G137070 NA non-coding upstream 1198 36116661 ~ 36116868 (+)
G137067 NA non-coding upstream 3648 36114187 ~ 36114418 (+)
G137059 NA non-coding upstream 15384 36102314 ~ 36102682 (+)
G136958 LOC106605156 non-coding upstream 16059 36101634 ~ 36102007 (+)
G137055 NA non-coding upstream 25511 36092228 ~ 36092555 (+)
G137183 NA non-coding downstream 3664 36125914 ~ 36126237 (+)
G137190 NA non-coding downstream 7647 36129897 ~ 36130119 (+)
G137203 NA non-coding downstream 21670 36143920 ~ 36146850 (+)
G137205 LOC106605151 non-coding downstream 30807 36153057 ~ 36154498 (+)
G137206 NA non-coding downstream 32752 36155002 ~ 36155236 (+)
G137058 LOC106605156 other upstream 17789 36099611 ~ 36100277 (+)
G136994 NA other upstream 80325 35982832 ~ 36037741 (+)
LOC110488639 LOC106605005 other upstream 330596 35785691 ~ 35788114 (+)
LOC110488391 LOC106582385 other upstream 934070 35180650 ~ 35184002 (+)
G139004 NA other downstream 1654811 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1797485 37919735 ~ 37940714 (+)
G139101 NA other downstream 1821492 37943742 ~ 37944012 (+)
G139179 NA other downstream 1929109 38051359 ~ 38051744 (+)

Expression


Co-expression Network